data_GFM
# 
_chem_comp.id                                    GFM 
_chem_comp.name                                  "2'-deoxy-5'-O-[(S)-{[(S)-[(1R)-1-fluoro-1-phosphonoethyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]guanosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H19 F N5 O12 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-09-14 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        537.225 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GFM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3JPS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GFM N1     N1     N 0 1 N N N 9.797  8.752  8.126  -7.897 2.246  0.152  N1     GFM 1  
GFM C2     C2     C 0 1 N N N 8.538  8.904  7.582  -7.481 1.553  1.250  C2     GFM 2  
GFM N2     N2     N 0 1 N N N 8.472  9.434  6.340  -8.231 1.612  2.397  N2     GFM 3  
GFM N3     N3     N 0 1 N N N 7.423  8.567  8.206  -6.384 0.831  1.241  N3     GFM 4  
GFM C4     C4     C 0 1 Y N N 7.666  8.073  9.437  -5.621 0.744  0.145  C4     GFM 5  
GFM C5     C5     C 0 1 Y N N 8.879  7.893  10.071 -5.994 1.432  -1.015 C5     GFM 6  
GFM C6     C6     C 0 1 N N N 10.066 8.234  9.388  -7.178 2.206  -0.992 C6     GFM 7  
GFM O6     O6     O 0 1 N N N 11.239 8.112  9.775  -7.541 2.822  -1.980 O6     GFM 8  
GFM N7     N7     N 0 1 Y N N 8.697  7.366  11.340 -5.056 1.171  -1.957 N7     GFM 9  
GFM C8     C8     C 0 1 Y N N 7.405  7.220  11.443 -4.151 0.382  -1.457 C8     GFM 10 
GFM N9     N9     N 0 1 Y N N 6.726  7.609  10.313 -4.458 0.091  -0.159 N9     GFM 11 
GFM PA     PA     P 0 1 N N N 5.069  5.038  14.750 1.938  -1.876 -0.552 PA     GFM 12 
GFM PB     PB     P 0 1 N N N 3.921  2.713  13.789 4.310  -0.104 -0.420 PB     GFM 13 
GFM PG     PG     P 0 1 N N N 3.764  1.100  16.432 6.519  1.740  0.345  PG     GFM 14 
GFM "C1'"  "C1'"  C 0 1 N N R 5.292  7.504  10.064 -3.683 -0.765 0.744  "C1'"  GFM 15 
GFM O1A    O1A    O 0 1 N N N 3.949  5.052  15.718 1.801  -1.645 -2.007 O1A    GFM 16 
GFM O1B    O1B    O 0 1 N N N 3.956  2.168  12.158 4.062  0.662  -1.814 O1B    GFM 17 
GFM O1G    O1G    O 0 1 N N N 3.664  2.752  16.901 6.372  2.590  -1.014 O1G    GFM 18 
GFM "C2'"  "C2'"  C 0 1 N N N 4.900  6.106  9.585  -4.249 -2.198 0.721  "C2'"  GFM 19 
GFM O2A    O2A    O 0 1 N N N 6.678  5.206  15.334 2.536  -3.349 -0.297 O2A    GFM 20 
GFM O2B    O2B    O 0 1 N N N 2.642  3.174  14.377 5.334  -1.156 -0.609 O2B    GFM 21 
GFM O2G    O2G    O 0 1 N N N 4.673  -0.004 17.388 7.088  2.690  1.513  O2G    GFM 22 
GFM "C3'"  "C3'"  C 0 1 N N S 4.506  5.431  10.883 -3.052 -3.071 0.272  "C3'"  GFM 23 
GFM "O3'"  "O3'"  O 0 1 N N N 3.620  4.325  10.660 -3.001 -4.289 1.018  "O3'"  GFM 24 
GFM O3A    O3A    O 0 1 N N N 4.999  3.762  13.934 2.934  -0.777 0.075  O3A    GFM 25 
GFM C3B    C3B    C 0 1 N N R 4.489  1.167  14.707 4.888  1.088  0.833  C3B    GFM 26 
GFM F3B2   2F3B   F 0 0 N N N 4.233  -0.015 14.086 3.974  2.142  0.931  2F3B   GFM 27 
GFM C3B3   3C3B   C 0 0 N N N 6.017  1.306  14.875 5.004  0.387  2.188  3C3B   GFM 28 
GFM O3G    O3G    O 0 1 N N N 2.395  0.564  16.279 7.455  0.614  0.125  O3G    GFM 29 
GFM "C4'"  "C4'"  C 0 1 N N R 3.785  6.572  11.583 -1.842 -2.164 0.611  "C4'"  GFM 30 
GFM "O4'"  "O4'"  O 0 1 N N N 4.610  7.723  11.299 -2.319 -0.837 0.298  "O4'"  GFM 31 
GFM "C5'"  "C5'"  C 0 1 N N N 3.567  6.400  13.068 -0.638 -2.523 -0.261 "C5'"  GFM 32 
GFM "O5'"  "O5'"  O 0 1 N N N 4.815  6.261  13.756 0.494  -1.754 0.149  "O5'"  GFM 33 
GFM HN1    HN1    H 0 1 N N N 10.577 9.037  7.569  -8.714 2.766  0.190  HN1    GFM 34 
GFM HN2    HN2    H 0 1 N N N 7.584  9.568  5.900  -9.044 2.141  2.419  HN2    GFM 35 
GFM HN2A   HN2A   H 0 0 N N N 9.311  9.692  5.861  -7.949 1.124  3.187  HN2A   GFM 36 
GFM H8     H8     H 0 1 N N N 6.918  6.833  12.326 -3.286 0.013  -1.988 H8     GFM 37 
GFM "H1'"  "H1'"  H 0 1 N N N 5.026  8.241  9.292  -3.724 -0.366 1.757  "H1'"  GFM 38 
GFM "H2'"  "H2'"  H 0 1 N N N 4.069  6.133  8.864  -4.583 -2.492 1.716  "H2'"  GFM 39 
GFM "H2'A" "H2'A" H 0 0 N N N 5.734  5.590  9.087  -5.067 -2.274 0.005  "H2'A" GFM 40 
GFM "H3'"  "H3'"  H 0 1 N N N 5.349  5.000  11.442 -3.099 -3.274 -0.798 "H3'"  GFM 41 
GFM "HO3'" "HO3'" H 0 0 N N N 3.394  3.927  11.492 -3.781 -4.851 0.908  "HO3'" GFM 42 
GFM HC3B   HC3B   H 0 0 N N N 6.409  0.427  15.408 5.716  -0.435 2.112  HC3B   GFM 43 
GFM HC3A   HC3A   H 0 0 N N N 6.490  1.375  13.884 5.350  1.099  2.938  HC3A   GFM 44 
GFM HC3C   HC3C   H 0 0 N N N 6.241  2.215  15.453 4.029  -0.004 2.480  HC3C   GFM 45 
GFM "H4'"  "H4'"  H 0 1 N N N 2.753  6.649  11.210 -1.589 -2.241 1.668  "H4'"  GFM 46 
GFM "H5'"  "H5'"  H 0 1 N N N 3.040  7.284  13.457 -0.415 -3.585 -0.153 "H5'"  GFM 47 
GFM "H5'A" "H5'A" H 0 0 N N N 2.962  5.497  13.239 -0.866 -2.305 -1.304 "H5'A" GFM 48 
GFM H16    H16    H 0 1 N N N 3.084  2.227  11.785 3.402  1.367  -1.764 H16    GFM 49 
GFM H17    H17    H 0 1 N N N 3.840  3.306  16.150 5.772  3.345  -0.943 H17    GFM 50 
GFM H18    H18    H 0 1 N N N 6.664  5.295  16.280 2.653  -3.570 0.637  H18    GFM 51 
GFM H19    H19    H 0 1 N N N 4.124  -0.740 17.631 7.955  3.073  1.321  H19    GFM 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GFM N1    C2     SING N N 1  
GFM N1    C6     SING N N 2  
GFM N1    HN1    SING N N 3  
GFM C2    N2     SING N N 4  
GFM C2    N3     DOUB N N 5  
GFM N2    HN2    SING N N 6  
GFM N2    HN2A   SING N N 7  
GFM N3    C4     SING N N 8  
GFM C4    C5     DOUB Y N 9  
GFM C4    N9     SING Y N 10 
GFM C5    C6     SING N N 11 
GFM C5    N7     SING Y N 12 
GFM C6    O6     DOUB N N 13 
GFM N7    C8     DOUB Y N 14 
GFM C8    N9     SING Y N 15 
GFM C8    H8     SING N N 16 
GFM N9    "C1'"  SING N N 17 
GFM PA    O1A    DOUB N N 18 
GFM PA    O2A    SING N N 19 
GFM PA    O3A    SING N N 20 
GFM PA    "O5'"  SING N N 21 
GFM PB    O1B    SING N N 22 
GFM PB    O2B    DOUB N N 23 
GFM PB    O3A    SING N N 24 
GFM PB    C3B    SING N N 25 
GFM PG    O1G    SING N N 26 
GFM PG    O2G    SING N N 27 
GFM PG    C3B    SING N N 28 
GFM PG    O3G    DOUB N N 29 
GFM "C1'" "C2'"  SING N N 30 
GFM "C1'" "O4'"  SING N N 31 
GFM "C1'" "H1'"  SING N N 32 
GFM "C2'" "C3'"  SING N N 33 
GFM "C2'" "H2'"  SING N N 34 
GFM "C2'" "H2'A" SING N N 35 
GFM "C3'" "O3'"  SING N N 36 
GFM "C3'" "C4'"  SING N N 37 
GFM "C3'" "H3'"  SING N N 38 
GFM "O3'" "HO3'" SING N N 39 
GFM C3B   F3B2   SING N N 40 
GFM C3B   C3B3   SING N N 41 
GFM C3B3  HC3B   SING N N 42 
GFM C3B3  HC3A   SING N N 43 
GFM C3B3  HC3C   SING N N 44 
GFM "C4'" "O4'"  SING N N 45 
GFM "C4'" "C5'"  SING N N 46 
GFM "C4'" "H4'"  SING N N 47 
GFM "C5'" "O5'"  SING N N 48 
GFM "C5'" "H5'"  SING N N 49 
GFM "C5'" "H5'A" SING N N 50 
GFM O1B   H16    SING N N 51 
GFM O1G   H17    SING N N 52 
GFM O2A   H18    SING N N 53 
GFM O2G   H19    SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GFM SMILES           ACDLabs              11.02 "O=P(O)(O)C(F)(C)P(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)CC3O" 
GFM SMILES_CANONICAL CACTVS               3.352 "C[C@@](F)([P](O)(O)=O)[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H](C[C@@H]1O)n2cnc3C(=O)NC(=Nc23)N" 
GFM SMILES           CACTVS               3.352 "C[C](F)([P](O)(O)=O)[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH](C[CH]1O)n2cnc3C(=O)NC(=Nc23)N" 
GFM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C[C@](F)([P@](=O)(O)O[P@@](=O)(O)OC[C@@H]1[C@H](C[C@@H](O1)n2cnc3c2N=C(NC3=O)N)O)P(=O)(O)O" 
GFM SMILES           "OpenEye OEToolkits" 1.7.0 "CC(F)(P(=O)(O)O)P(=O)(O)OP(=O)(O)OCC1C(CC(O1)n2cnc3c2N=C(NC3=O)N)O" 
GFM InChI            InChI                1.03  
"InChI=1S/C12H19FN5O12P3/c1-12(13,31(21,22)23)32(24,25)30-33(26,27)28-3-6-5(19)2-7(29-6)18-4-15-8-9(18)16-11(14)17-10(8)20/h4-7,19H,2-3H2,1H3,(H,24,25)(H,26,27)(H2,21,22,23)(H3,14,16,17,20)/t5-,6+,7+,12+/m0/s1" 
GFM InChIKey         InChI                1.03  MKPYQNARCBWQRN-WGVJZOHMSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GFM "SYSTEMATIC NAME" ACDLabs              11.02 "2'-deoxy-5'-O-[(S)-{[(S)-[(1R)-1-fluoro-1-phosphonoethyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]guanosine"                                                 
GFM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(1R)-1-[[[(2R,3S,5R)-5-(2-azanyl-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]-1-fluoro-ethyl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GFM "Create component"  2009-09-14 RCSB 
GFM "Modify descriptor" 2011-06-04 RCSB 
# 
