data_JDM
# 
_chem_comp.id                                    JDM 
_chem_comp.name                                  "5-{2-[2-(hydroxymethyl)phenyl]ethyl}-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H14 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-02-27 
_chem_comp.pdbx_modified_date                    2014-02-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        290.271 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JDM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4JD4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JDM OAJ OAJ O 0 1 N N N 6.058 -15.696 -13.977 -2.866 -3.117 -0.030 OAJ JDM 1  
JDM CAI CAI C 0 1 N N N 5.177 -14.761 -13.868 -1.914 -2.170 -0.137 CAI JDM 2  
JDM OAK OAK O 0 1 N N N 3.898 -14.718 -13.992 -0.750 -2.491 -0.262 OAK JDM 3  
JDM C4  C4  C 0 1 N N N 5.720 -13.390 -13.878 -2.288 -0.736 -0.103 C4  JDM 4  
JDM N3  N3  N 0 1 N N N 5.286 -12.498 -14.884 -3.586 -0.362 0.171  N3  JDM 5  
JDM C2  C2  C 0 1 N N N 5.731 -11.137 -14.870 -3.945 0.932  0.206  C2  JDM 6  
JDM O2  O2  O 0 1 N N N 5.314 -10.428 -15.861 -5.101 1.219  0.452  O2  JDM 7  
JDM N1  N1  N 0 1 N N N 6.554 -10.681 -13.883 -3.060 1.918  -0.022 N1  JDM 8  
JDM C6  C6  C 0 1 N N N 6.946 -11.513 -12.840 -1.771 1.629  -0.297 C6  JDM 9  
JDM O6  O6  O 0 1 N N N 7.652 -10.994 -11.990 -0.968 2.519  -0.504 O6  JDM 10 
JDM C5  C5  C 0 1 N N N 6.455 -12.835 -12.807 -1.354 0.222  -0.336 C5  JDM 11 
JDM CAL CAL C 0 1 N N N 6.793 -13.666 -11.596 0.076  -0.151 -0.633 CAL JDM 12 
JDM CAM CAM C 0 1 N N N 5.886 -13.210 -10.377 0.862  -0.244 0.676  CAM JDM 13 
JDM CAN CAN C 0 1 Y N N 5.881 -14.224 -9.294  2.314  -0.510 0.373  CAN JDM 14 
JDM CAO CAO C 0 1 Y N N 6.944 -14.178 -8.361  2.774  -1.810 0.280  CAO JDM 15 
JDM CAP CAP C 0 1 Y N N 7.051 -15.101 -7.311  4.106  -2.054 0.003  CAP JDM 16 
JDM CAQ CAQ C 0 1 Y N N 6.133 -16.134 -7.287  4.978  -0.998 -0.183 CAQ JDM 17 
JDM CAR CAR C 0 1 Y N N 5.065 -16.154 -8.122  4.518  0.303  -0.091 CAR JDM 18 
JDM CAS CAS C 0 1 Y N N 4.915 -15.228 -9.190  3.184  0.546  0.182  CAS JDM 19 
JDM CAT CAT C 0 1 N N N 3.883 -15.383 -10.136 2.682  1.964  0.277  CAT JDM 20 
JDM OAU OAU O 0 1 N N N 2.695 -14.787 -9.799  3.750  2.868  -0.011 OAU JDM 21 
JDM H1  H1  H 0 1 N N N 5.627 -16.514 -14.197 -2.574 -4.038 -0.058 H1  JDM 22 
JDM H2  H2  H 0 1 N N N 4.670 -12.816 -15.604 -4.253 -1.046 0.342  H2  JDM 23 
JDM H3  H3  H 0 1 N N N 6.880 -9.736  -13.910 -3.350 2.843  0.010  H3  JDM 24 
JDM H4  H4  H 0 1 N N N 6.607 -14.728 -11.815 0.102  -1.115 -1.142 H4  JDM 25 
JDM H5  H5  H 0 1 N N N 7.853 -13.525 -11.338 0.525  0.609  -1.273 H5  JDM 26 
JDM H6  H6  H 0 1 N N N 6.275 -12.262 -9.977  0.770  0.695  1.222  H6  JDM 27 
JDM H7  H7  H 0 1 N N N 4.856 -13.063 -10.733 0.462  -1.057 1.282  H7  JDM 28 
JDM H8  H8  H 0 1 N N N 7.695 -13.409 -8.461  2.092  -2.636 0.426  H8  JDM 29 
JDM H9  H9  H 0 1 N N N 7.817 -15.009 -6.555  4.465  -3.070 -0.069 H9  JDM 30 
JDM H10 H10 H 0 1 N N N 6.270 -16.945 -6.586  6.018  -1.188 -0.400 H10 JDM 31 
JDM H11 H11 H 0 1 N N N 4.300 -16.901 -7.970  5.199  1.128  -0.236 H11 JDM 32 
JDM H12 H12 H 0 1 N N N 3.700 -16.460 -10.268 1.876  2.112  -0.441 H12 JDM 33 
JDM H13 H13 H 0 1 N N N 4.224 -14.950 -11.088 2.310  2.151  1.285  H13 JDM 34 
JDM H14 H14 H 0 1 N N N 2.058 -14.939 -10.487 3.498  3.801  0.031  H14 JDM 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JDM O2  C2  DOUB N N 1  
JDM N3  C2  SING N N 2  
JDM N3  C4  SING N N 3  
JDM C2  N1  SING N N 4  
JDM OAK CAI DOUB N N 5  
JDM OAJ CAI SING N N 6  
JDM N1  C6  SING N N 7  
JDM C4  CAI SING N N 8  
JDM C4  C5  DOUB N N 9  
JDM C6  C5  SING N N 10 
JDM C6  O6  DOUB N N 11 
JDM C5  CAL SING N N 12 
JDM CAL CAM SING N N 13 
JDM CAM CAN SING N N 14 
JDM CAT OAU SING N N 15 
JDM CAT CAS SING N N 16 
JDM CAN CAS DOUB Y N 17 
JDM CAN CAO SING Y N 18 
JDM CAS CAR SING Y N 19 
JDM CAO CAP DOUB Y N 20 
JDM CAR CAQ DOUB Y N 21 
JDM CAP CAQ SING Y N 22 
JDM OAJ H1  SING N N 23 
JDM N3  H2  SING N N 24 
JDM N1  H3  SING N N 25 
JDM CAL H4  SING N N 26 
JDM CAL H5  SING N N 27 
JDM CAM H6  SING N N 28 
JDM CAM H7  SING N N 29 
JDM CAO H8  SING N N 30 
JDM CAP H9  SING N N 31 
JDM CAQ H10 SING N N 32 
JDM CAR H11 SING N N 33 
JDM CAT H12 SING N N 34 
JDM CAT H13 SING N N 35 
JDM OAU H14 SING N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JDM SMILES           ACDLabs              12.01 "O=C1NC(C(=O)O)=C(C(=O)N1)CCc2ccccc2CO"                                                                                    
JDM InChI            InChI                1.03  "InChI=1S/C14H14N2O5/c17-7-9-4-2-1-3-8(9)5-6-10-11(13(19)20)15-14(21)16-12(10)18/h1-4,17H,5-7H2,(H,19,20)(H2,15,16,18,21)" 
JDM InChIKey         InChI                1.03  MDVINTUDORARNK-UHFFFAOYSA-N                                                                                                
JDM SMILES_CANONICAL CACTVS               3.370 "OCc1ccccc1CCC2=C(NC(=O)NC2=O)C(O)=O"                                                                                      
JDM SMILES           CACTVS               3.370 "OCc1ccccc1CCC2=C(NC(=O)NC2=O)C(O)=O"                                                                                      
JDM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(c(c1)CCC2=C(NC(=O)NC2=O)C(=O)O)CO"                                                                                  
JDM SMILES           "OpenEye OEToolkits" 1.7.6 "c1ccc(c(c1)CCC2=C(NC(=O)NC2=O)C(=O)O)CO"                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JDM "SYSTEMATIC NAME" ACDLabs              12.01 "5-{2-[2-(hydroxymethyl)phenyl]ethyl}-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid" 
JDM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "5-[2-[2-(hydroxymethyl)phenyl]ethyl]-2,4-bis(oxidanylidene)-1H-pyrimidine-6-carboxylic acid"   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JDM "Create component" 2013-02-27 PDBJ 
JDM "Initial release"  2014-02-26 RCSB 
# 
