data_LSM
#

_chem_comp.id                                   LSM
_chem_comp.name                                 "dodecyl 4-O-alpha-D-glucopyranosyl-1-seleno-beta-D-glucopyranoside"
_chem_comp.type                                 D-SACCHARIDE
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C24 H46 O10 Se"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        DODECYL-BETA-D-SELENOMALTOSIDE
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-08-09
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       573.576
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LSM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3B29
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LSM  SE      SE      SE  0  0  N  N  N  82.515  61.270   6.730   -0.631  -2.296  -0.589  SE      LSM   1  
LSM  C1      C1      C   0  1  N  N  N  84.301  60.831   6.080   -1.934  -1.070   0.210  C1      LSM   2  
LSM  C2      C2      C   0  1  N  N  N  84.958  59.861   7.066   -3.330  -1.384  -0.333  C2      LSM   3  
LSM  C3      C3      C   0  1  N  N  N  83.994  58.741   7.463   -4.347  -0.426   0.291  C3      LSM   4  
LSM  C4      C4      C   0  1  N  N  N  84.712  57.391   7.521   -5.742  -0.740  -0.252  C4      LSM   5  
LSM  C5      C5      C   0  1  N  N  N  83.779  56.249   7.111   -6.760   0.217   0.372  C5      LSM   6  
LSM  C6      C6      C   0  1  N  N  N  84.578  55.020   6.670   -8.155  -0.096  -0.172  C6      LSM   7  
LSM  C7      C7      C   0  1  N  N  N  84.104  54.516   5.303   -9.172   0.861   0.452  C7      LSM   8  
LSM  C8      C8      C   0  1  N  N  N  85.180  53.665   4.619  -10.568   0.548  -0.091  C8      LSM   9  
LSM  C9      C9      C   0  1  N  N  N  85.102  53.792   3.094  -11.585   1.505   0.533  C9      LSM  10  
LSM  "C1'"   "C1'"   C   0  1  N  N  S  81.805  62.192   5.155    1.027  -1.687   0.261  "C1'"   LSM  11  
LSM  C1B     C1B     C   0  1  N  N  R  82.346  64.565   0.601    6.037  -0.230  -0.073  C1B     LSM  12  
LSM  O1B     O1B     O   0  1  N  N  N  81.442  63.675   1.274    4.833  -0.017   0.667  O1B     LSM  13  
LSM  "C2'"   "C2'"   C   0  1  N  N  R  82.590  63.486   4.897    2.199  -2.535  -0.240  "C2'"   LSM  14  
LSM  "O2'"   "O2'"   O   0  1  N  N  N  82.329  64.417   5.953    1.999  -3.898   0.142  "O2'"   LSM  15  
LSM  C2B     C2B     C   0  1  N  N  R  81.595  65.823   0.139    7.244   0.074   0.818  C2B     LSM  16  
LSM  O2B     O2B     O   0  1  N  N  N  80.828  66.352   1.226    7.196  -0.749   1.985  O2B     LSM  17  
LSM  "C3'"   "C3'"   C   0  1  N  N  R  82.213  64.133   3.556    3.498  -2.014   0.383  "C3'"   LSM  18  
LSM  "O3'"   "O3'"   O   0  1  N  N  N  83.210  65.099   3.207    4.606  -2.753  -0.135  "O3'"   LSM  19  
LSM  C3B     C3B     C   0  1  N  N  S  80.667  65.521  -1.041    7.206   1.549   1.230  C3B     LSM  20  
LSM  O3B     O3B     O   0  1  N  N  N  80.193  66.747  -1.604    8.368   1.860   2.001  O3B     LSM  21  
LSM  "C4'"   "C4'"   C   0  1  N  N  S  82.080  63.099   2.429    3.661  -0.532   0.031  "C4'"   LSM  22  
LSM  O4B     O4B     O   0  1  N  N  N  80.476  64.331  -3.141    7.071   3.795   0.342  O4B     LSM  23  
LSM  C4B     C4B     C   0  1  N  N  S  81.397  64.712  -2.114    7.180   2.420  -0.030  C4B     LSM  24  
LSM  "C5'"   "C5'"   C   0  1  N  N  R  81.235  61.926   2.898    2.433   0.239   0.521  "C5'"   LSM  25  
LSM  "O5'"   "O5'"   O   0  1  N  N  N  81.881  61.311   4.019    1.257  -0.316  -0.072  "O5'"   LSM  26  
LSM  C5B     C5B     C   0  1  N  N  R  82.038  63.467  -1.497    5.975   2.025  -0.888  C5B     LSM  27  
LSM  O5B     O5B     O   0  1  N  N  N  82.984  63.890  -0.505    6.056   0.635  -1.211  O5B     LSM  28  
LSM  "C6'"   "C6'"   C   0  1  N  N  N  81.088  60.911   1.762    2.560   1.710   0.121  "C6'"   LSM  29  
LSM  "O6'"   "O6'"   O   0  1  N  N  N  79.970  60.059   2.023    1.461   2.447   0.660  "O6'"   LSM  30  
LSM  C6B     C6B     C   0  1  N  N  N  82.770  62.654  -2.568    5.975   2.849  -2.178  C6B     LSM  31  
LSM  O6B     O6B     O   0  1  N  N  N  81.914  61.608  -3.048    4.790   2.565  -2.924  O6B     LSM  32  
LSM  H1      H1      H   0  1  N  N  N  84.230  60.361   5.088   -1.930  -1.192   1.294  H1      LSM  33  
LSM  H1A     H1A     H   0  1  N  N  N  84.904  61.748   6.004   -1.669  -0.043  -0.041  H1A     LSM  34  
LSM  H2      H2      H   0  1  N  N  N  85.845  59.416   6.591   -3.333  -1.262  -1.416  H2      LSM  35  
LSM  H2A     H2A     H   0  1  N  N  N  85.252  60.415   7.969   -3.595  -2.411  -0.082  H2A     LSM  36  
LSM  H3      H3      H   0  1  N  N  N  83.575  58.965   8.455   -4.343  -0.548   1.374  H3      LSM  37  
LSM  H3A     H3A     H   0  1  N  N  N  83.187  58.684   6.718   -4.081   0.600   0.040  H3A     LSM  38  
LSM  H4      H4      H   0  1  N  N  N  85.570  57.414   6.833   -5.746  -0.618  -1.336  H4      LSM  39  
LSM  H4A     H4A     H   0  1  N  N  N  85.058  57.216   8.550   -6.008  -1.767  -0.001  H4A     LSM  40  
LSM  H5      H5      H   0  1  N  N  N  83.149  55.976   7.970   -6.756   0.095   1.455  H5      LSM  41  
LSM  H5A     H5A     H   0  1  N  N  N  83.149  56.585   6.274   -6.494   1.244   0.121  H5A     LSM  42  
LSM  H6      H6      H   0  1  N  N  N  85.642  55.292   6.601   -8.159   0.026  -1.255  H6      LSM  43  
LSM  H6A     H6A     H   0  1  N  N  N  84.441  54.220   7.412   -8.421  -1.123   0.079  H6A     LSM  44  
LSM  H7      H7      H   0  1  N  N  N  83.202  53.903   5.443   -9.169   0.739   1.536  H7      LSM  45  
LSM  H7A     H7A     H   0  1  N  N  N  83.876  55.382   4.664   -8.907   1.888   0.201  H7A     LSM  46  
LSM  H8      H8      H   0  1  N  N  N  86.170  54.006   4.954  -10.572   0.669  -1.174  H8      LSM  47  
LSM  H8A     H8A     H   0  1  N  N  N  85.030  52.611   4.897  -10.833  -0.479   0.160  H8A     LSM  48  
LSM  H9      H9      H   0  1  N  N  N  84.025  53.809   2.869  -11.582   1.383   1.616  H9      LSM  49  
LSM  H9A     H9A     H   0  1  N  N  N  85.617  54.737   2.865  -11.320   2.532   0.282  H9A     LSM  50  
LSM  "H1'"   "H1'"   H   0  1  N  N  N  80.753  62.464   5.328    0.939  -1.789   1.342  "H1'"   LSM  51  
LSM  H1B     H1B     H   0  1  N  N  N  83.136  64.878   1.299    6.081  -1.267  -0.404  H1B     LSM  52  
LSM  "H2'"   "H2'"   H   0  1  N  N  N  83.658  63.226   4.860    2.261  -2.466  -1.326  "H2'"   LSM  53  
LSM  "HO2'"  "HO2'"  H   0  0  N  N  N  82.814  65.219   5.796    1.191  -4.291  -0.213  "HO2'"  LSM  54  
LSM  H2B     H2B     H   0  1  N  N  N  82.340  66.561  -0.191    8.163  -0.127   0.267  H2B     LSM  55  
LSM  HO2B    HO2B    H   0  0  N  N  N  80.365  67.130   0.938    7.212  -1.698   1.798  HO2B    LSM  56  
LSM  "H3'"   "H3'"   H   0  1  N  N  N  81.231  64.615   3.676    3.456  -2.131   1.466  "H3'"   LSM  57  
LSM  "HO3'"  "HO3'"  H   0  0  N  N  N  82.983  65.504   2.378    4.564  -3.702   0.045  "HO3'"  LSM  58  
LSM  H3B     H3B     H   0  1  N  N  N  79.817  64.927  -0.674    6.312   1.739   1.824  H3B     LSM  59  
LSM  HO3B    HO3B    H   0  0  N  N  N  79.617  66.558  -2.336    8.453   1.340   2.812  HO3B    LSM  60  
LSM  "H4'"   "H4'"   H   0  1  N  N  N  83.093  62.764   2.162    3.755  -0.422  -1.049  "H4'"   LSM  61  
LSM  HO4B    HO4B    H   0  0  N  N  N  80.932  63.829  -3.806    7.800   4.112   0.892  HO4B    LSM  62  
LSM  H4B     H4B     H   0  1  N  N  N  82.191  65.335  -2.552    8.098   2.267  -0.598  H4B     LSM  63  
LSM  "H5'"   "H5'"   H   0  1  N  N  N  80.235  62.278   3.192    2.364   0.162   1.606  "H5'"   LSM  64  
LSM  H5B     H5B     H   0  1  N  N  N  81.255  62.838  -1.049    5.056   2.217  -0.334  H5B     LSM  65  
LSM  "H6'"   "H6'"   H   0  1  N  N  N  80.928  61.444   0.813    3.495   2.113   0.511  "H6'"   LSM  66  
LSM  "H6'A"  "H6'A"  H   0  0  N  N  N  82.003  60.304   1.693    2.555   1.792  -0.966  "H6'A"  LSM  67  
LSM  "HO6'"  "HO6'"  H   0  0  N  N  N  79.880  59.429   1.317    1.477   3.390   0.445  "HO6'"  LSM  68  
LSM  H6B     H6B     H   0  1  N  N  N  83.045  63.314  -3.404    6.004   3.910  -1.931  H6B     LSM  69  
LSM  H6BA    H6BA    H   0  0  N  N  N  83.679  62.212  -2.134    6.850   2.591  -2.774  H6BA    LSM  70  
LSM  HO6B    HO6B    H   0  0  N  N  N  82.370  61.105  -3.712    4.723   3.054  -3.756  HO6B    LSM  71  
LSM  C10     C10     C   0  1  N  N  N  85.694  52.772   2.103  -12.981   1.191  -0.010  C10     LSM  72  
LSM  C11     C11     C   0  1  N  N  N  85.403  52.903   0.597  -13.998   2.148   0.614  C11     LSM  73  
LSM  C12     C12     C   0  1  N  N  N  85.994  51.884  -0.394  -15.393   1.835   0.070  C12     LSM  74  
LSM  H10     H10     H   0  1  N  N  N  86.787  52.842   2.210  -12.984   1.313  -1.094  H10     LSM  75  
LSM  H10A    H10A    H   0  0  N  N  N  85.301  51.790   2.405  -13.246   0.164   0.241  H10A    LSM  76  
LSM  H11     H11     H   0  1  N  N  N  84.310  52.833   0.491  -13.994   2.027   1.697  H11     LSM  77  
LSM  H11A    H11A    H   0  0  N  N  N  85.796  53.885   0.295  -13.732   3.175   0.363  H11A    LSM  78  
LSM  H12     H12     H   0  1  N  N  N  85.678  52.140  -1.416  -16.118   2.517   0.515  H12     LSM  79  
LSM  H12A    H12A    H   0  0  N  N  N  87.092  51.908  -0.333  -15.397   1.957  -1.013  H12A    LSM  80  
LSM  H12B    H12B    H   0  0  N  N  N  85.634  50.876  -0.141  -15.659   0.808   0.321  H12B    LSM  81  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LSM  SE     C1      SING  N  N   1  
LSM  SE     "C1'"   SING  N  N   2  
LSM  C1     C2      SING  N  N   3  
LSM  C1     H1      SING  N  N   4  
LSM  C1     H1A     SING  N  N   5  
LSM  C2     C3      SING  N  N   6  
LSM  C2     H2      SING  N  N   7  
LSM  C2     H2A     SING  N  N   8  
LSM  C3     C4      SING  N  N   9  
LSM  C3     H3      SING  N  N  10  
LSM  C3     H3A     SING  N  N  11  
LSM  C4     C5      SING  N  N  12  
LSM  C4     H4      SING  N  N  13  
LSM  C4     H4A     SING  N  N  14  
LSM  C5     C6      SING  N  N  15  
LSM  C5     H5      SING  N  N  16  
LSM  C5     H5A     SING  N  N  17  
LSM  C6     C7      SING  N  N  18  
LSM  C6     H6      SING  N  N  19  
LSM  C6     H6A     SING  N  N  20  
LSM  C7     C8      SING  N  N  21  
LSM  C7     H7      SING  N  N  22  
LSM  C7     H7A     SING  N  N  23  
LSM  C8     C9      SING  N  N  24  
LSM  C8     H8      SING  N  N  25  
LSM  C8     H8A     SING  N  N  26  
LSM  C9     H9      SING  N  N  27  
LSM  C9     H9A     SING  N  N  28  
LSM  "C1'"  "C2'"   SING  N  N  29  
LSM  "C1'"  "O5'"   SING  N  N  30  
LSM  "C1'"  "H1'"   SING  N  N  31  
LSM  C1B    O1B     SING  N  N  32  
LSM  C1B    C2B     SING  N  N  33  
LSM  C1B    O5B     SING  N  N  34  
LSM  C1B    H1B     SING  N  N  35  
LSM  O1B    "C4'"   SING  N  N  36  
LSM  "C2'"  "O2'"   SING  N  N  37  
LSM  "C2'"  "C3'"   SING  N  N  38  
LSM  "C2'"  "H2'"   SING  N  N  39  
LSM  "O2'"  "HO2'"  SING  N  N  40  
LSM  C2B    O2B     SING  N  N  41  
LSM  C2B    C3B     SING  N  N  42  
LSM  C2B    H2B     SING  N  N  43  
LSM  O2B    HO2B    SING  N  N  44  
LSM  "C3'"  "O3'"   SING  N  N  45  
LSM  "C3'"  "C4'"   SING  N  N  46  
LSM  "C3'"  "H3'"   SING  N  N  47  
LSM  "O3'"  "HO3'"  SING  N  N  48  
LSM  C3B    O3B     SING  N  N  49  
LSM  C3B    C4B     SING  N  N  50  
LSM  C3B    H3B     SING  N  N  51  
LSM  O3B    HO3B    SING  N  N  52  
LSM  "C4'"  "C5'"   SING  N  N  53  
LSM  "C4'"  "H4'"   SING  N  N  54  
LSM  O4B    C4B     SING  N  N  55  
LSM  O4B    HO4B    SING  N  N  56  
LSM  C4B    C5B     SING  N  N  57  
LSM  C4B    H4B     SING  N  N  58  
LSM  "C5'"  "O5'"   SING  N  N  59  
LSM  "C5'"  "C6'"   SING  N  N  60  
LSM  "C5'"  "H5'"   SING  N  N  61  
LSM  C5B    O5B     SING  N  N  62  
LSM  C5B    C6B     SING  N  N  63  
LSM  C5B    H5B     SING  N  N  64  
LSM  "C6'"  "O6'"   SING  N  N  65  
LSM  "C6'"  "H6'"   SING  N  N  66  
LSM  "C6'"  "H6'A"  SING  N  N  67  
LSM  "O6'"  "HO6'"  SING  N  N  68  
LSM  C6B    O6B     SING  N  N  69  
LSM  C6B    H6B     SING  N  N  70  
LSM  C6B    H6BA    SING  N  N  71  
LSM  O6B    HO6B    SING  N  N  72  
LSM  C9     C10     SING  N  N  73  
LSM  C10    C11     SING  N  N  74  
LSM  C11    C12     SING  N  N  75  
LSM  C10    H10     SING  N  N  76  
LSM  C10    H10A    SING  N  N  77  
LSM  C11    H11     SING  N  N  78  
LSM  C11    H11A    SING  N  N  79  
LSM  C12    H12     SING  N  N  80  
LSM  C12    H12A    SING  N  N  81  
LSM  C12    H12B    SING  N  N  82  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LSM  SMILES            ACDLabs               12.01  "O(C1C(OC([Se]CCCCCCCCCCCC)C(O)C1O)CO)C2OC(C(O)C(O)C2O)CO"  
LSM  InChI             InChI                 1.03   "InChI=1S/C24H46O10Se/c1-2-3-4-5-6-7-8-9-10-11-12-35-24-21(31)19(29)22(16(14-26)33-24)34-23-20(30)18(28)17(27)15(13-25)32-23/h15-31H,2-14H2,1H3/t15-,16-,17-,18+,19-,20-,21-,22-,23-,24+/m1/s1"  
LSM  InChIKey          InChI                 1.03   MEIBWTYMLPEGMV-ALYNCGSASA-N  
LSM  SMILES_CANONICAL  CACTVS                3.370  "CCCCCCCCCCCC[Se][C@@H]1O[C@H](CO)[C@@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O"  
LSM  SMILES            CACTVS                3.370  "CCCCCCCCCCCC[Se][CH]1O[CH](CO)[CH](O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH]1O"  
LSM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.2  "CCCCCCCCCCCC[Se][C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O)O"  
LSM  SMILES            "OpenEye OEToolkits"  1.7.2  "CCCCCCCCCCCC[Se]C1C(C(C(C(O1)CO)OC2C(C(C(C(O2)CO)O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LSM  "SYSTEMATIC NAME"  ACDLabs               12.01  "dodecyl 4-O-alpha-D-glucopyranosyl-1-seleno-beta-D-glucopyranoside"  
LSM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.2  "(2R,3R,4S,5S,6R)-2-[(2R,3S,4R,5R,6S)-6-dodecylselanyl-2-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LSM  "Create component"  2011-08-09  PDBJ  
LSM  "Modify atom id"    2011-09-06  PDBJ  
LSM  "Modify atom id"    2011-09-07  PDBJ  
LSM  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     LSM
_pdbx_chem_comp_synonyms.name        DODECYL-BETA-D-SELENOMALTOSIDE
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
