data_LVM
# 
_chem_comp.id                                    LVM 
_chem_comp.name                                  "N-(4-methylpyridin-3-yl)-2-(spiro[2.3]hexan-5-yl)acetamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H18 N2 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-15 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        230.306 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LVM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7GCX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LVM N1  N1  N 0 1 N N N N N N 8.262  -0.590 20.647 1.256  0.917  0.251  N1  LVM 1  
LVM C4  C1  C 0 1 Y N N N N N 7.845  -0.139 18.276 2.333  -1.249 0.175  C4  LVM 2  
LVM C5  C2  C 0 1 Y N N N N N 7.484  -0.016 19.618 2.414  0.137  0.154  C5  LVM 3  
LVM C6  C3  C 0 1 N N N N N N 9.430  -0.106 21.105 0.067  0.409  -0.128 C6  LVM 4  
LVM C7  C4  C 0 1 N N N N N N 9.931  -0.774 22.361 -1.196 1.200  0.094  C7  LVM 5  
LVM C8  C5  C 0 1 N N N N N N 11.269 -1.485 22.195 -2.395 0.402  -0.422 C8  LVM 6  
LVM C10 C6  C 0 1 N N N N N N 13.285 -1.334 23.033 -4.367 -0.140 0.105  C10 LVM 7  
LVM C13 C7  C 0 1 N N N N N N 12.527 -0.639 21.888 -2.987 -0.564 0.620  C13 LVM 8  
LVM O   O1  O 0 1 N N N N N N 10.024 0.836  20.594 0.014  -0.686 -0.648 O   LVM 9  
LVM C12 C8  C 0 1 N N N N N N 14.363 -0.795 23.913 -5.731 -0.357 0.751  C12 LVM 10 
LVM C11 C9  C 0 1 N N N N N N 14.636 -1.972 23.013 -5.416 -0.985 -0.610 C11 LVM 11 
LVM C9  C10 C 0 1 N N N N N N 11.947 -1.923 23.514 -3.724 1.174  -0.353 C9  LVM 12 
LVM C1  C11 C 0 1 Y N N N N N 6.345  0.738  19.948 3.664  0.739  0.036  C1  LVM 13 
LVM C   C12 C 0 1 N N N N N N 5.909  0.942  21.377 3.799  2.240  0.010  C   LVM 14 
LVM N   N2  N 0 1 Y N N N N N 7.160  0.428  17.278 3.422  -1.987 0.088  N   LVM 15 
LVM C3  C13 C 0 1 Y N N N N N 6.073  1.139  17.603 4.620  -1.448 -0.020 C3  LVM 16 
LVM C2  C14 C 0 1 Y N N N N N 5.640  1.320  18.902 4.781  -0.075 -0.058 C2  LVM 17 
LVM H1  H1  H 0 1 N N N N N N 7.915  -1.427 21.071 1.309  1.822  0.595  H1  LVM 18 
LVM H2  H2  H 0 1 N N N N N N 8.721  -0.721 18.031 1.369  -1.727 0.267  H2  LVM 19 
LVM H3  H3  H 0 1 N N N N N N 10.042 -0.006 23.140 -1.320 1.394  1.160  H3  LVM 20 
LVM H4  H4  H 0 1 N N N N N N 9.183  -1.515 22.680 -1.131 2.146  -0.442 H4  LVM 21 
LVM H5  H5  H 0 1 N N N N N N 11.186 -2.331 21.497 -2.209 -0.061 -1.391 H5  LVM 22 
LVM H6  H6  H 0 1 N N N N N N 12.956 -0.821 20.892 -2.752 -1.611 0.429  H6  LVM 23 
LVM H7  H7  H 0 1 N N N N N N 12.387 0.442  22.035 -2.795 -0.266 1.651  H7  LVM 24 
LVM H8  H8  H 0 1 N N N N N N 14.307 -0.936 25.002 -5.780 -1.022 1.613  H8  LVM 25 
LVM H9  H9  H 0 1 N N N N N N 14.816 0.183  23.693 -6.420 0.488  0.769  H9  LVM 26 
LVM H10 H10 H 0 1 N N N N N N 14.779 -2.974 23.444 -5.898 -0.554 -1.487 H10 LVM 27 
LVM H11 H11 H 0 1 N N N N N N 15.288 -1.855 22.135 -5.257 -2.063 -0.642 H11 LVM 28 
LVM H12 H12 H 0 1 N N N N N N 11.539 -1.434 24.411 -3.737 1.955  0.407  H12 LVM 29 
LVM H13 H13 H 0 1 N N N N N N 11.967 -3.012 23.667 -4.080 1.520  -1.324 H13 LVM 30 
LVM H14 H14 H 0 1 N N N N N N 5.210  0.143  21.665 3.924  2.611  1.027  H14 LVM 31 
LVM H15 H15 H 0 1 N N N N N N 6.789  0.915  22.036 4.668  2.517  -0.587 H15 LVM 32 
LVM H16 H16 H 0 1 N N N N N N 5.409  1.917  21.472 2.902  2.678  -0.429 H16 LVM 33 
LVM H17 H17 H 0 1 N N N N N N 5.504  1.596  16.807 5.488  -2.088 -0.089 H17 LVM 34 
LVM H18 H18 H 0 1 N N N N N N 4.758  1.911  19.103 5.766  0.357  -0.147 H18 LVM 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LVM N   C3  DOUB Y N 1  
LVM N   C4  SING Y N 2  
LVM C3  C2  SING Y N 3  
LVM C4  C5  DOUB Y N 4  
LVM C2  C1  DOUB Y N 5  
LVM C5  C1  SING Y N 6  
LVM C5  N1  SING N N 7  
LVM C1  C   SING N N 8  
LVM O   C6  DOUB N N 9  
LVM N1  C6  SING N N 10 
LVM C6  C7  SING N N 11 
LVM C13 C8  SING N N 12 
LVM C13 C10 SING N N 13 
LVM C8  C7  SING N N 14 
LVM C8  C9  SING N N 15 
LVM C11 C10 SING N N 16 
LVM C11 C12 SING N N 17 
LVM C10 C9  SING N N 18 
LVM C10 C12 SING N N 19 
LVM N1  H1  SING N N 20 
LVM C4  H2  SING N N 21 
LVM C7  H3  SING N N 22 
LVM C7  H4  SING N N 23 
LVM C8  H5  SING N N 24 
LVM C13 H6  SING N N 25 
LVM C13 H7  SING N N 26 
LVM C12 H8  SING N N 27 
LVM C12 H9  SING N N 28 
LVM C11 H10 SING N N 29 
LVM C11 H11 SING N N 30 
LVM C9  H12 SING N N 31 
LVM C9  H13 SING N N 32 
LVM C   H14 SING N N 33 
LVM C   H15 SING N N 34 
LVM C   H16 SING N N 35 
LVM C3  H17 SING N N 36 
LVM C2  H18 SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LVM SMILES           ACDLabs              12.01 "O=C(Nc1cnccc1C)CC1CC2(CC2)C1"                                                                              
LVM InChI            InChI                1.06  "InChI=1S/C14H18N2O/c1-10-2-5-15-9-12(10)16-13(17)6-11-7-14(8-11)3-4-14/h2,5,9,11H,3-4,6-8H2,1H3,(H,16,17)" 
LVM InChIKey         InChI                1.06  BEZLDJLMZNYTJV-UHFFFAOYSA-N                                                                                 
LVM SMILES_CANONICAL CACTVS               3.385 "Cc1ccncc1NC(=O)CC2CC3(CC3)C2"                                                                              
LVM SMILES           CACTVS               3.385 "Cc1ccncc1NC(=O)CC2CC3(CC3)C2"                                                                              
LVM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccncc1NC(=O)CC2CC3(C2)CC3"                                                                              
LVM SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1ccncc1NC(=O)CC2CC3(C2)CC3"                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LVM "SYSTEMATIC NAME" ACDLabs              12.01 "N-(4-methylpyridin-3-yl)-2-(spiro[2.3]hexan-5-yl)acetamide"    
LVM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-(4-methylpyridin-3-yl)-2-spiro[2.3]hexan-5-yl-ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LVM "Create component" 2023-08-15 RCSB 
LVM "Initial release"  2023-11-08 RCSB 
# 
