data_LWM
# 
_chem_comp.id                                    LWM 
_chem_comp.name                                  "[(1R,2S,4R)-4-{[2-amino-5-(formylamino)-6-oxo-1,6-dihydropyrimidin-4-yl]amino}-2-hydroxycyclopentyl]methyl dihydrogen phosphate" 
_chem_comp.type                                  "DNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C11 H18 N5 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-08-07 
_chem_comp.pdbx_modified_date                    2013-02-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        363.264 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LWM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2LWM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LWM P1     P1     P 0 1 N N N -4.245 0.002  8.676  5.791  0.420  -0.038 P1     LWM 1  
LWM N1     N1     N 0 1 N N N -0.387 0.257  17.024 -5.372 -1.126 -0.039 N1     LWM 2  
LWM C1     C1     C 0 1 N N N -1.645 0.791  16.927 -4.325 -1.889 0.377  C1     LWM 3  
LWM N2     N2     N 0 1 N N N -2.246 1.197  18.036 -4.552 -3.185 0.763  N2     LWM 4  
LWM N3     N3     N 0 1 N N N -2.284 0.923  15.778 -3.100 -1.412 0.416  N3     LWM 5  
LWM C2     C2     C 0 1 N N N -1.589 0.485  14.701 -2.834 -0.153 0.048  C2     LWM 6  
LWM C3     C3     C 0 1 N N N -0.317 -0.068 14.699 -3.867 0.671  -0.386 C3     LWM 7  
LWM C4     C4     C 0 1 N N N 0.356  -0.202 15.956 -5.169 0.150  -0.429 C4     LWM 8  
LWM O1     O1     O 0 1 N N N 1.473  -0.660 16.185 -6.103 0.841  -0.804 O1     LWM 9  
LWM N4     N4     N 0 1 N N N 0.150  -0.424 13.503 -3.612 1.999  -0.779 N4     LWM 10 
LWM C5     C5     C 0 1 N N N 1.242  0.104  12.962 -4.231 3.019  -0.151 C5     LWM 11 
LWM O2     O2     O 0 1 N N N 1.907  0.967  13.536 -4.941 2.799  0.808  O2     LWM 12 
LWM N5     N5     N 0 1 N N N -2.262 0.635  13.564 -1.538 0.327  0.098  N5     LWM 13 
LWM "C1'"  "C1'"  C 0 1 N N R -3.628 1.222  13.518 -0.452 -0.543 0.555  "C1'"  LWM 14 
LWM OP3    OP3    O 0 1 N Y N -5.464 0.630  8.114  6.334  0.934  1.388  OP3    LWM 15 
LWM "C2'"  "C2'"  C 0 1 N N N -3.778 2.298  12.447 0.108  -1.354 -0.627 "C2'"  LWM 16 
LWM OP2    OP2    O 0 1 N N N -2.923 0.624  8.445  6.813  -0.668 -0.641 OP2    LWM 17 
LWM "C3'"  "C3'"  C 0 1 N N S -5.170 2.163  11.821 1.595  -0.967 -0.762 "C3'"  LWM 18 
LWM "O3'"  "O3'"  O 0 1 N N N -6.162 3.129  12.237 2.378  -2.109 -1.115 "O3'"  LWM 19 
LWM "C4'"  "C4'"  C 0 1 N N R -5.645 0.737  12.156 1.984  -0.457 0.648  "C4'"  LWM 20 
LWM "C5'"  "C5'"  C 0 1 N N N -5.711 -0.161 10.920 3.190  0.482  0.571  "C5'"  LWM 21 
LWM "O5'"  "O5'"  O 0 1 N N N -4.437 -0.171 10.264 4.341  -0.254 0.151  "O5'"  LWM 22 
LWM "C6'"  "C6'"  C 0 1 N N N -4.658 0.163  13.175 0.714  0.308  1.099  "C6'"  LWM 23 
LWM HN1    HN1    H 0 1 N N N 0.022  0.196  17.934 -6.266 -1.502 -0.059 HN1    LWM 24 
LWM HN7    HN7    H 0 1 N N N -0.346 -1.123 12.988 -2.990 2.180  -1.501 HN7    LWM 25 
LWM HN9    HN9    H 0 1 N N N 1.557  -0.235 11.986 -4.095 4.031  -0.502 HN9    LWM 26 
LWM H5     H5     H 0 1 N N N -1.692 1.210  12.977 -1.348 1.240  -0.170 H5     LWM 27 
LWM "H2'"  "H2'"  H 0 1 N N N -3.670 3.294  12.902 0.016  -2.421 -0.424 "H2'"  LWM 28 
LWM "H5'"  "H5'"  H 0 1 N N N -6.476 0.223  10.229 2.986  1.277  -0.146 "H5'"  LWM 29 
LWM "H6'"  "H6'"  H 0 1 N N N -5.199 -0.133 14.086 0.694  1.306  0.660  "H6'"  LWM 30 
LWM "H1'"  "H2'A" H 0 1 N N N -3.873 1.657  14.498 -0.815 -1.217 1.331  "H1'"  LWM 31 
LWM "H2''" "H2''" H 0 0 N N N -3.008 2.163  11.674 -0.430 -1.100 -1.541 "H2''" LWM 32 
LWM HN2A   HN2A   H 0 0 N N N -1.782 1.107  18.917 -3.813 -3.739 1.062  HN2A   LWM 33 
LWM "H3'"  "H3'"  H 0 1 N N N -3.163 1.593  17.991 -5.451 -3.549 0.738  "H3'"  LWM 34 
LWM H3     H3     H 0 1 N N N -5.052 2.225  10.729 1.717  -0.176 -1.501 H3     LWM 35 
LWM "H4'"  "H4'"  H 0 1 N N N -6.643 0.792  12.614 2.189  -1.293 1.317  "H4'"  LWM 36 
LWM "H5''" "H5''" H 0 0 N N N -5.974 -1.185 11.225 3.375  0.917  1.553  "H5''" LWM 37 
LWM "H6''" "H6''" H 0 0 N N N -4.154 -0.716 12.746 0.671  0.367  2.186  "H6''" LWM 38 
LWM HOP3   HOP3   H 0 0 N N N -5.384 0.688  7.169  6.428  0.234  2.048  HOP3   LWM 39 
LWM HOP2   HOP2   H 0 0 N N N -2.754 0.672  7.511  7.708  -0.331 -0.782 HOP2   LWM 40 
LWM "HO3'" "HO3'" H 0 0 N Y N -6.982 2.954  11.791 2.137  -2.504 -1.964 "HO3'" LWM 41 
LWM OP1    OP1    O 0 1 N N N -4.035 0.051  7.222  5.685  1.566  -0.968 OP1    LWM 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LWM P1     "O5'"  SING N N 1  
LWM P1     OP1    DOUB N N 2  
LWM N1     HN1    SING N N 3  
LWM C1     N1     SING N N 4  
LWM C1     N2     SING N N 5  
LWM N2     "H3'"  SING N N 6  
LWM N3     C1     DOUB N N 7  
LWM C2     N3     SING N N 8  
LWM C3     C2     DOUB N N 9  
LWM C3     C4     SING N N 10 
LWM C4     N1     SING N N 11 
LWM C4     O1     DOUB N N 12 
LWM N4     C3     SING N N 13 
LWM C5     N4     SING N N 14 
LWM C5     O2     DOUB N N 15 
LWM N5     C2     SING N N 16 
LWM "C1'"  N5     SING N N 17 
LWM "C1'"  "H1'"  SING N N 18 
LWM OP3    P1     SING N N 19 
LWM OP3    HOP3   SING N N 20 
LWM "C2'"  "C1'"  SING N N 21 
LWM "C2'"  "H2'"  SING N N 22 
LWM OP2    P1     SING N N 23 
LWM OP2    HOP2   SING N N 24 
LWM "C3'"  "C2'"  SING N N 25 
LWM "C3'"  "C4'"  SING N N 26 
LWM "C3'"  "O3'"  SING N N 27 
LWM "O3'"  "HO3'" SING N N 28 
LWM "C4'"  "H4'"  SING N N 29 
LWM "C4'"  "C6'"  SING N N 30 
LWM "C5'"  "C4'"  SING N N 31 
LWM "C5'"  "H5''" SING N N 32 
LWM "O5'"  "C5'"  SING N N 33 
LWM "C6'"  "C1'"  SING N N 34 
LWM "C6'"  "H6'"  SING N N 35 
LWM HN7    N4     SING N N 36 
LWM HN9    C5     SING N N 37 
LWM H5     N5     SING N N 38 
LWM "H5'"  "C5'"  SING N N 39 
LWM "H2''" "C2'"  SING N N 40 
LWM HN2A   N2     SING N N 41 
LWM H3     "C3'"  SING N N 42 
LWM "H6''" "C6'"  SING N N 43 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LWM SMILES           ACDLabs              12.01 "O=C1C(NC=O)=C(N=C(N)N1)NC2CC(COP(=O)(O)O)C(O)C2"                                                                                                                    
LWM InChI            InChI                1.03  "InChI=1S/C11H18N5O7P/c12-11-15-9(8(13-4-17)10(19)16-11)14-6-1-5(7(18)2-6)3-23-24(20,21)22/h4-7,18H,1-3H2,(H,13,17)(H2,20,21,22)(H4,12,14,15,16,19)/t5-,6-,7+/m1/s1" 
LWM InChIKey         InChI                1.03  UQRLPMGPCBTFTR-QYNIQEEDSA-N                                                                                                                                          
LWM SMILES_CANONICAL CACTVS               3.370 "NC1=NC(=C(NC=O)C(=O)N1)N[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)C2"                                                                                                     
LWM SMILES           CACTVS               3.370 "NC1=NC(=C(NC=O)C(=O)N1)N[CH]2C[CH](O)[CH](CO[P](O)(O)=O)C2"                                                                                                         
LWM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@H](C[C@@H]([C@H]1COP(=O)(O)O)O)NC2=C(C(=O)NC(=N2)N)NC=O"                                                                                                       
LWM SMILES           "OpenEye OEToolkits" 1.7.6 "C1C(CC(C1COP(=O)(O)O)O)NC2=C(C(=O)NC(=N2)N)NC=O"                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LWM "SYSTEMATIC NAME" ACDLabs              12.01 "[(1R,2S,4R)-4-{[2-amino-5-(formylamino)-6-oxo-1,6-dihydropyrimidin-4-yl]amino}-2-hydroxycyclopentyl]methyl dihydrogen phosphate"  
LWM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(1R,2S,4R)-4-[(2-azanyl-5-formamido-6-oxidanylidene-1H-pyrimidin-4-yl)amino]-2-oxidanyl-cyclopentyl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LWM "Create component"         2012-08-07 RCSB 
LWM "Modify atom id"           2013-01-18 RCSB 
LWM "Modify leaving atom flag" 2013-01-18 RCSB 
LWM "Initial release"          2013-02-15 RCSB 
# 
