data_PRM
#

_chem_comp.id                                   PRM
_chem_comp.name                                 "3,8-DIAMINO-5[3-(DIETHYLMETHYLAMMONIO)PROPYL]-6-PHENYLPHENANTHRIDINIUM"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H34 N4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        PROPIDIUM
_chem_comp.pdbx_formal_charge                   2
_chem_comp.pdbx_initial_date                    2002-12-11
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       414.586
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PRM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1N5R
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PRM  C16   C16   C  0  1  Y  N  N  37.727  25.772   9.693  -4.408   0.825  -0.830  C16   PRM   1  
PRM  C17   C17   C  0  1  Y  N  N  38.507  25.953   8.522  -3.109   0.727  -0.335  C17   PRM   2  
PRM  C18   C18   C  0  1  Y  N  N  37.999  25.313   7.297  -2.533  -0.545  -0.107  C18   PRM   3  
PRM  C19   C19   C  0  1  Y  N  N  36.783  24.536   7.416  -3.275  -1.694  -0.383  C19   PRM   4  
PRM  C20   C20   C  0  1  Y  N  N  36.052  24.380   8.628  -4.562  -1.570  -0.874  C20   PRM   5  
PRM  C21   C21   C  0  1  Y  N  N  36.528  25.008   9.776  -5.120  -0.310  -1.095  C21   PRM   6  
PRM  C22   C22   C  0  1  Y  N  N  38.771  25.439   6.078  -1.164  -0.611   0.410  C22   PRM   7  
PRM  N23   N23   N  1  1  Y  N  N  40.089  26.024   6.038  -0.490   0.486   0.666  N23   PRM   8  
PRM  C24   C24   C  0  1  Y  N  N  40.613  26.485   7.264  -0.984   1.718   0.470  C24   PRM   9  
PRM  C25   C25   C  0  1  Y  N  N  39.828  26.493   8.518  -2.293   1.908  -0.031  C25   PRM  10  
PRM  C26   C26   C  0  1  Y  N  N  41.971  26.953   7.372  -0.201   2.846   0.762  C26   PRM  11  
PRM  C27   C27   C  0  1  Y  N  N  42.588  27.395   8.561  -0.716   4.110   0.558  C27   PRM  12  
PRM  C28   C28   C  0  1  Y  N  N  41.838  27.391   9.750  -2.010   4.280   0.063  C28   PRM  13  
PRM  C29   C29   C  0  1  Y  N  N  40.481  26.942   9.696  -2.789   3.198  -0.228  C29   PRM  14  
PRM  C30   C30   C  0  1  Y  N  N  38.172  24.963   4.786  -0.535  -1.929   0.651  C30   PRM  15  
PRM  C31   C31   C  0  1  Y  N  N  37.470  25.903   3.952  -0.376  -2.832  -0.401  C31   PRM  16  
PRM  C32   C32   C  0  1  Y  N  N  36.930  25.479   2.701   0.210  -4.060  -0.170  C32   PRM  17  
PRM  C33   C33   C  0  1  Y  N  N  37.082  24.135   2.283   0.641  -4.395   1.102  C33   PRM  18  
PRM  C34   C34   C  0  1  Y  N  N  37.774  23.209   3.114   0.485  -3.505   2.149  C34   PRM  19  
PRM  C35   C35   C  0  1  Y  N  N  38.317  23.622   4.363  -0.094  -2.272   1.929  C35   PRM  20  
PRM  N36   N36   N  0  1  N  N  N  34.871  23.610   8.704  -5.310  -2.716  -1.152  N36   PRM  21  
PRM  N37   N37   N  0  1  N  N  N  43.915  27.845   8.585   0.065   5.230   0.850  N37   PRM  22  
PRM  C41   C41   C  0  1  N  N  N  40.894  26.187   4.741   0.873   0.359   1.187  C41   PRM  23  
PRM  C42   C42   C  0  1  N  N  N  41.834  25.063   4.316   1.870   0.423   0.028  C42   PRM  24  
PRM  C43   C43   C  0  1  N  N  N  42.194  25.118   2.832   3.294   0.290   0.572  C43   PRM  25  
PRM  N44   N44   N  1  1  N  N  N  43.542  24.644   2.250   4.251   0.352  -0.541  N44   PRM  26  
PRM  C44   C44   C  0  1  N  N  N  43.598  23.120   2.272   5.618   0.224  -0.018  C44   PRM  27  
PRM  C45   C45   C  0  1  N  N  N  42.454  22.193   1.845   6.615   0.288  -1.177  C45   PRM  28  
PRM  C46   C46   C  0  1  N  N  N  44.699  25.150   3.076   4.111   1.638  -1.236  C46   PRM  29  
PRM  C47   C47   C  0  1  N  N  N  43.690  25.122   0.810   3.981  -0.745  -1.480  C47   PRM  30  
PRM  C48   C48   C  0  1  N  N  N  44.967  25.045  -0.035   4.127  -2.085  -0.756  C48   PRM  31  
PRM  H16   H16   H  0  1  N  N  N  38.082  26.265  10.614  -4.850   1.795  -1.005  H16   PRM  32  
PRM  H19   H19   H  0  1  N  N  N  36.386  24.028   6.521  -2.848  -2.672  -0.214  H19   PRM  33  
PRM  H21   H21   H  0  1  N  N  N  35.972  24.903  10.723  -6.126  -0.231  -1.478  H21   PRM  34  
PRM  H26   H26   H  0  1  N  N  N  42.595  26.975   6.462   0.801   2.724   1.146  H26   PRM  35  
PRM  H28   H28   H  0  1  N  N  N  42.299  27.729  10.694  -2.398   5.276  -0.091  H28   PRM  36  
PRM  H29   H29   H  0  1  N  N  N  39.896  26.942  10.631  -3.789   3.340  -0.610  H29   PRM  37  
PRM  H31   H31   H  0  1  N  N  N  37.346  26.951   4.272  -0.712  -2.571  -1.393  H31   PRM  38  
PRM  H32   H32   H  0  1  N  N  N  36.393  26.193   2.054   0.334  -4.760  -0.983  H32   PRM  39  
PRM  H33   H33   H  0  1  N  N  N  36.664  23.811   1.315   1.099  -5.357   1.278  H33   PRM  40  
PRM  H34   H34   H  0  1  N  N  N  37.891  22.162   2.787   0.822  -3.773   3.139  H34   PRM  41  
PRM  H35   H35   H  0  1  N  N  N  38.851  22.901   5.005  -0.215  -1.577   2.748  H35   PRM  42  
PRM  H361  1H36  H  0  0  N  N  N  35.087  22.678   8.351  -6.213  -2.634  -1.496  H361  PRM  43  
PRM  H362  2H36  H  0  0  N  N  N  34.347  23.498   9.572  -4.927  -3.594  -1.000  H362  PRM  44  
PRM  H371  1H37  H  0  0  N  N  N  44.004  28.589   7.893   0.965   5.117   1.193  H371  PRM  45  
PRM  H372  2H37  H  0  0  N  N  N  44.361  28.165   9.445  -0.292   6.120   0.708  H372  PRM  46  
PRM  H411  1H41  H  0  0  N  N  N  41.471  27.140   4.791   0.977  -0.596   1.703  H411  PRM  47  
PRM  H412  2H41  H  0  0  N  N  N  40.190  26.405   3.904   1.074   1.172   1.884  H412  PRM  48  
PRM  H421  1H42  H  0  0  N  N  N  41.413  24.067   4.587   1.766   1.377  -0.488  H421  PRM  49  
PRM  H422  2H42  H  0  0  N  N  N  42.752  25.050   4.949   1.670  -0.391  -0.669  H422  PRM  50  
PRM  H431  1H43  H  0  0  N  N  N  42.048  26.172   2.500   3.398  -0.665   1.088  H431  PRM  51  
PRM  H432  2H43  H  0  0  N  N  N  41.391  24.574   2.281   3.494   1.103   1.269  H432  PRM  52  
PRM  H441  1H44  H  0  0  N  N  N  43.882  22.824   3.309   5.722  -0.731   0.498  H441  PRM  53  
PRM  H442  2H44  H  0  0  N  N  N  44.492  22.823   1.676   5.818   1.037   0.679  H442  PRM  54  
PRM  H451  1H45  H  0  0  N  N  N  42.171  22.489   0.808   6.415  -0.525  -1.874  H451  PRM  55  
PRM  H452  2H45  H  0  0  N  N  N  42.495  21.079   1.861   6.511   1.243  -1.693  H452  PRM  56  
PRM  H453  3H45  H  0  0  N  N  N  41.560  22.490   2.441   7.629   0.193  -0.790  H453  PRM  57  
PRM  H461  1H46  H  0  0  N  N  N  44.593  24.866   4.149   4.821   1.684  -2.062  H461  PRM  58  
PRM  H462  2H46  H  0  0  N  N  N  45.673  24.808   2.655   3.097   1.733  -1.624  H462  PRM  59  
PRM  H463  3H46  H  0  0  N  N  N  44.668  26.259   3.190   4.311   2.452  -0.539  H463  PRM  60  
PRM  H471  1H47  H  0  0  N  N  N  43.367  26.189   0.797   2.967  -0.650  -1.868  H471  PRM  61  
PRM  H472  2H47  H  0  0  N  N  N  42.892  24.609   0.224   4.692  -0.699  -2.306  H472  PRM  62  
PRM  H481  1H48  H  0  0  N  N  N  45.290  23.978  -0.022   3.927  -2.898  -1.453  H481  PRM  63  
PRM  H482  2H48  H  0  0  N  N  N  45.075  25.395  -1.088   5.142  -2.180  -0.368  H482  PRM  64  
PRM  H483  3H48  H  0  0  N  N  N  45.765  25.558   0.551   3.417  -2.131   0.070  H483  PRM  65  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PRM  C16  C17   DOUB  Y  N   1  
PRM  C16  C21   SING  Y  N   2  
PRM  C16  H16   SING  N  N   3  
PRM  C17  C18   SING  Y  N   4  
PRM  C17  C25   SING  Y  N   5  
PRM  C18  C19   DOUB  Y  N   6  
PRM  C18  C22   SING  Y  N   7  
PRM  C19  C20   SING  Y  N   8  
PRM  C19  H19   SING  N  N   9  
PRM  C20  C21   DOUB  Y  N  10  
PRM  C20  N36   SING  N  N  11  
PRM  C21  H21   SING  N  N  12  
PRM  C22  N23   DOUB  Y  N  13  
PRM  C22  C30   SING  Y  N  14  
PRM  N23  C24   SING  Y  N  15  
PRM  N23  C41   SING  N  N  16  
PRM  C24  C25   DOUB  Y  N  17  
PRM  C24  C26   SING  Y  N  18  
PRM  C25  C29   SING  Y  N  19  
PRM  C26  C27   DOUB  Y  N  20  
PRM  C26  H26   SING  N  N  21  
PRM  C27  C28   SING  Y  N  22  
PRM  C27  N37   SING  N  N  23  
PRM  C28  C29   DOUB  Y  N  24  
PRM  C28  H28   SING  N  N  25  
PRM  C29  H29   SING  N  N  26  
PRM  C30  C31   DOUB  Y  N  27  
PRM  C30  C35   SING  Y  N  28  
PRM  C31  C32   SING  Y  N  29  
PRM  C31  H31   SING  N  N  30  
PRM  C32  C33   DOUB  Y  N  31  
PRM  C32  H32   SING  N  N  32  
PRM  C33  C34   SING  Y  N  33  
PRM  C33  H33   SING  N  N  34  
PRM  C34  C35   DOUB  Y  N  35  
PRM  C34  H34   SING  N  N  36  
PRM  C35  H35   SING  N  N  37  
PRM  N36  H361  SING  N  N  38  
PRM  N36  H362  SING  N  N  39  
PRM  N37  H371  SING  N  N  40  
PRM  N37  H372  SING  N  N  41  
PRM  C41  C42   SING  N  N  42  
PRM  C41  H411  SING  N  N  43  
PRM  C41  H412  SING  N  N  44  
PRM  C42  C43   SING  N  N  45  
PRM  C42  H421  SING  N  N  46  
PRM  C42  H422  SING  N  N  47  
PRM  C43  N44   SING  N  N  48  
PRM  C43  H431  SING  N  N  49  
PRM  C43  H432  SING  N  N  50  
PRM  N44  C44   SING  N  N  51  
PRM  N44  C46   SING  N  N  52  
PRM  N44  C47   SING  N  N  53  
PRM  C44  C45   SING  N  N  54  
PRM  C44  H441  SING  N  N  55  
PRM  C44  H442  SING  N  N  56  
PRM  C45  H451  SING  N  N  57  
PRM  C45  H452  SING  N  N  58  
PRM  C45  H453  SING  N  N  59  
PRM  C46  H461  SING  N  N  60  
PRM  C46  H462  SING  N  N  61  
PRM  C46  H463  SING  N  N  62  
PRM  C47  C48   SING  N  N  63  
PRM  C47  H471  SING  N  N  64  
PRM  C47  H472  SING  N  N  65  
PRM  C48  H481  SING  N  N  66  
PRM  C48  H482  SING  N  N  67  
PRM  C48  H483  SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PRM  SMILES            ACDLabs               10.04  "c4c3c1ccc(cc1c(c2ccccc2)[n+](c3cc(N)c4)CCC[N+](CC)(CC)C)N"  
PRM  SMILES_CANONICAL  CACTVS                3.341  "CC[N+](C)(CC)CCC[n+]1c2cc(N)ccc2c3ccc(N)cc3c1c4ccccc4"  
PRM  SMILES            CACTVS                3.341  "CC[N+](C)(CC)CCC[n+]1c2cc(N)ccc2c3ccc(N)cc3c1c4ccccc4"  
PRM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC[N+](C)(CC)CCC[n+]1c2cc(ccc2c3ccc(cc3c1c4ccccc4)N)N"  
PRM  SMILES            "OpenEye OEToolkits"  1.5.0  "CC[N+](C)(CC)CCC[n+]1c2cc(ccc2c3ccc(cc3c1c4ccccc4)N)N"  
PRM  InChI             InChI                 1.03   "InChI=1S/C27H33N4/c1-4-31(3,5-2)17-9-16-30-26-19-22(29)13-15-24(26)23-14-12-21(28)18-25(23)27(30)20-10-7-6-8-11-20/h6-8,10-15,18-19,29H,4-5,9,16-17,28H2,1-3H3/q+1/p+1"  
PRM  InChIKey          InChI                 1.03   ZDWVWKDAWBGPDN-UHFFFAOYSA-O  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PRM  "SYSTEMATIC NAME"  ACDLabs               10.04  "3,8-diamino-5-{3-[diethyl(methyl)ammonio]propyl}-6-phenylphenanthridinium"  
PRM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "3-(3,8-diamino-6-phenyl-phenanthridin-5-ium-5-yl)propyl-diethyl-methyl-azanium"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PRM  "Create component"      2002-12-11  RCSB  
PRM  "Modify aromatic_flag"  2011-06-04  RCSB  
PRM  "Modify descriptor"     2011-06-04  RCSB  
PRM  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     PRM
_pdbx_chem_comp_synonyms.name        PROPIDIUM
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
