data_RVM
#

_chem_comp.id                                   RVM
_chem_comp.name                                 "4,6-dideoxy-2,3-di-O-methyl-alpha-D-xylo-hexopyranose"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C8 H16 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-02-26
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       176.210
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RVM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1SR5
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RVM  C4   C4   C  0  1  N  N  N  31.759  7.524  38.679   1.078  -1.225  -0.334  C4   RVM   1  
RVM  C5   C5   C  0  1  N  N  R  32.395  6.958  40.044   2.044  -0.120   0.100  C5   RVM   2  
RVM  O5   O5   O  0  1  N  N  N  31.335  6.777  41.075   1.597   1.134  -0.420  O5   RVM   3  
RVM  C6   C6   C  0  1  N  N  N  33.485  7.914  40.587   3.444  -0.425  -0.438  C6   RVM   4  
RVM  C3   C3   C  0  1  N  N  S  30.671  6.547  38.203  -0.332  -0.881   0.157  C3   RVM   5  
RVM  O3   O3   O  0  1  N  N  N  30.108  7.021  37.007  -1.254  -1.870  -0.307  O3   RVM   6  
RVM  C3O  C3O  C  0  1  N  N  N  29.818  5.913  35.868  -1.422  -2.972   0.587  C3O  RVM   7  
RVM  C2   C2   C  0  1  N  N  R  29.578  6.376  39.350  -0.733   0.491  -0.395  C2   RVM   8  
RVM  O2   O2   O  0  1  N  N  N  28.565  5.520  38.969  -2.017   0.854   0.115  O2   RVM   9  
RVM  C2O  C2O  C  0  1  N  N  N  27.194  6.096  38.534  -2.777   1.685  -0.763  C2O  RVM  10  
RVM  C1   C1   C  0  1  N  N  S  30.237  5.858  40.658   0.304   1.530   0.042  C1   RVM  11  
RVM  H41  H41  H  0  1  N  N  N  32.543  7.608  37.912   1.077  -1.301  -1.421  H41  RVM  12  
RVM  H42  H42  H  0  1  N  N  N  31.315  8.514  38.860   1.393  -2.174   0.098  H42  RVM  13  
RVM  H5   H5   H  0  1  N  N  N  32.859  5.986  39.823   2.075  -0.071   1.189  H5   RVM  14  
RVM  H61  H61  H  0  1  N  N  N  33.902  7.504  41.519   3.412  -0.473  -1.526  H61  RVM  15  
RVM  H62  H62  H  0  1  N  N  N  34.287  8.018  39.841   4.131   0.362  -0.128  H62  RVM  16  
RVM  H63  H63  H  0  1  N  N  N  33.041  8.900  40.787   3.784  -1.382  -0.041  H63  RVM  17  
RVM  H3   H3   H  0  1  N  N  N  31.137  5.565  38.038  -0.343  -0.855   1.246  H3   RVM  18  
RVM  H8   H8   H  0  1  N  N  N  29.380  6.401  34.984  -1.795  -2.609   1.545  H8   RVM  19  
RVM  H9   H9   H  0  1  N  N  N  30.761  5.422  35.586  -2.136  -3.678   0.163  H9   RVM  20  
RVM  H10  H10  H  0  1  N  N  N  29.115  5.162  36.258  -0.464  -3.470   0.735  H10  RVM  21  
RVM  H2   H2   H  0  1  N  N  N  29.166  7.375  39.558  -0.771   0.449  -1.483  H2   RVM  22  
RVM  H12  H12  H  0  1  N  N  N  26.517  5.271  38.268  -3.739   1.916  -0.304  H12  RVM  23  
RVM  H13  H13  H  0  1  N  N  N  26.759  6.674  39.363  -2.232   2.610  -0.951  H13  RVM  24  
RVM  H14  H14  H  0  1  N  N  N  27.332  6.753  37.662  -2.942   1.163  -1.706  H14  RVM  25  
RVM  H1   H1   H  0  1  N  N  N  29.508  6.407  41.273   0.047   2.500  -0.383  H1   RVM  26  
RVM  O1   O1   O  0  1  N  Y  N  29.621  4.514  41.063   0.315   1.622   1.468  O1   RVM  27  
RVM  HO1  HO1  H  0  1  N  Y  N  28.899  4.308  40.481   0.950   2.262   1.816  HO1  RVM  28  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RVM  C4   C3   SING  N  N   1  
RVM  C4   C5   SING  N  N   2  
RVM  C5   O5   SING  N  N   3  
RVM  C5   C6   SING  N  N   4  
RVM  O5   C1   SING  N  N   5  
RVM  C3   O3   SING  N  N   6  
RVM  C3   C2   SING  N  N   7  
RVM  O3   C3O  SING  N  N   8  
RVM  C2   O2   SING  N  N   9  
RVM  C2   C1   SING  N  N  10  
RVM  O2   C2O  SING  N  N  11  
RVM  C4   H41  SING  N  N  12  
RVM  C4   H42  SING  N  N  13  
RVM  C5   H5   SING  N  N  14  
RVM  C6   H61  SING  N  N  15  
RVM  C6   H62  SING  N  N  16  
RVM  C6   H63  SING  N  N  17  
RVM  C3   H3   SING  N  N  18  
RVM  C3O  H8   SING  N  N  19  
RVM  C3O  H9   SING  N  N  20  
RVM  C3O  H10  SING  N  N  21  
RVM  C2   H2   SING  N  N  22  
RVM  C2O  H12  SING  N  N  23  
RVM  C2O  H13  SING  N  N  24  
RVM  C2O  H14  SING  N  N  25  
RVM  C1   H1   SING  N  N  26  
RVM  C1   O1   SING  N  N  27  
RVM  O1   HO1  SING  N  N  28  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RVM  SMILES            ACDLabs               12.01  "C1C(OC)C(OC)C(OC1C)O"  
RVM  InChI             InChI                 1.03   "InChI=1S/C8H16O4/c1-5-4-6(10-2)7(11-3)8(9)12-5/h5-9H,4H2,1-3H3/t5-,6+,7-,8+/m1/s1"  
RVM  InChIKey          InChI                 1.03   MRHDSSSOHRLNIT-CWKFCGSDSA-N  
RVM  SMILES_CANONICAL  CACTVS                3.385  "CO[C@H]1C[C@@H](C)O[C@H](O)[C@@H]1OC"  
RVM  SMILES            CACTVS                3.385  "CO[CH]1C[CH](C)O[CH](O)[CH]1OC"  
RVM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H]1C[C@@H]([C@H]([C@H](O1)O)OC)OC"  
RVM  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1CC(C(C(O1)O)OC)OC"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RVM  "SYSTEMATIC NAME"  ACDLabs               12.01  "4,6-dideoxy-2,3-di-O-methyl-alpha-D-xylo-hexopyranose"  
RVM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S},3~{R},4~{S},6~{R})-3,4-dimethoxy-6-methyl-oxan-2-ol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
RVM  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
RVM  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
RVM  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
RVM  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RVM  "Create component"  2020-02-26  RCSB  
RVM  "Initial release"   2020-07-29  RCSB  
##
