data_RYM
#

_chem_comp.id                                   RYM
_chem_comp.name                                 "4-(benzimidazol-1-ylmethyl)benzenecarbonitrile"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H11 N3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-03-02
_chem_comp.pdbx_modified_date                   2020-06-26
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       233.268
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RYM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5R54
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RYM  N1   N1   N  0  1  Y  N  N  14.063  23.250  -1.470   2.661  -1.587  -1.136  N1   RYM   1  
RYM  N3   N2   N  0  1  N  N  N   8.197  27.358   2.794  -5.622   1.250  -1.151  N3   RYM   2  
RYM  C4   C1   C  0  1  Y  N  N  12.214  22.107  -0.809   2.043  -0.013   0.303  C4   RYM   3  
RYM  C5   C2   C  0  1  Y  N  N  12.918  22.593  -1.911   2.939  -0.319  -0.735  C5   RYM   4  
RYM  C6   C3   C  0  1  Y  N  N  12.429  22.378  -3.196   3.874   0.636  -1.141  C6   RYM   5  
RYM  C7   C4   C  0  1  Y  N  N  14.030  23.166  -0.163   1.679  -2.064  -0.429  C7   RYM   6  
RYM  C8   C5   C  0  1  N  N  N  12.600  22.246   1.692   0.175  -1.299   1.446  C8   RYM   7  
RYM  C10  C6   C  0  1  Y  N  N  10.262  23.113   1.940  -1.946  -1.554   0.142  C10  RYM   8  
RYM  C13  C7   C  0  1  Y  N  N  11.197  25.626   2.619  -2.591   1.112   0.563  C13  RYM   9  
RYM  C15  C8   C  0  1  N  N  N   8.906  26.460   2.774  -4.660   0.827  -0.720  C15  RYM  10  
RYM  C1   C9   C  0  1  Y  N  N  11.244  21.687  -3.332   3.910   1.857  -0.527  C1   RYM  11  
RYM  C11  C10  C  0  1  Y  N  N   9.363  24.129   2.204  -3.116  -1.047  -0.384  C11  RYM  12  
RYM  C12  C11  C  0  1  Y  N  N   9.833  25.387   2.550  -3.447   0.294  -0.176  C12  RYM  13  
RYM  C14  C12  C  0  1  Y  N  N  12.083  24.597   2.364  -1.424   0.591   1.084  C14  RYM  14  
RYM  C2   C13  C  0  1  Y  N  N  10.551  21.203  -2.220   3.025   2.160   0.498  C2   RYM  15  
RYM  C3   C14  C  0  1  Y  N  N  11.023  21.404  -0.944   2.094   1.232   0.914  C3   RYM  16  
RYM  C9   C15  C  0  1  Y  N  N  11.622  23.328   2.065  -1.102  -0.738   0.874  C9   RYM  17  
RYM  N2   N3   N  0  1  Y  N  N  12.967  22.461   0.296   1.258  -1.136   0.473  N2   RYM  18  
RYM  H1   H1   H  0  1  N  N  N  12.962  22.742  -4.062   4.568   0.411  -1.937  H1   RYM  19  
RYM  H2   H2   H  0  1  N  N  N  14.773  23.612   0.482   1.258  -3.052  -0.542  H2   RYM  20  
RYM  H3   H3   H  0  1  N  N  N  12.132  21.257   1.811   0.427  -0.767   2.363  H3   RYM  21  
RYM  H4   H4   H  0  1  N  N  N  13.493  22.308   2.331   0.040  -2.358   1.665  H4   RYM  22  
RYM  H5   H5   H  0  1  N  N  N   9.899  22.143   1.634  -1.690  -2.592  -0.014  H5   RYM  23  
RYM  H6   H6   H  0  1  N  N  N  11.564  26.610   2.870  -2.841   2.149   0.728  H6   RYM  24  
RYM  H7   H7   H  0  1  N  N  N  10.843  21.516  -4.320   4.635   2.592  -0.844  H7   RYM  25  
RYM  H8   H8   H  0  1  N  N  N   8.301  23.944   2.141  -3.774  -1.685  -0.955  H8   RYM  26  
RYM  H9   H9   H  0  1  N  N  N  13.146  24.786   2.399  -0.761   1.223   1.656  H9   RYM  27  
RYM  H10  H10  H  0  1  N  N  N   9.628  20.661  -2.365   3.066   3.129   0.972  H10  RYM  28  
RYM  H11  H11  H  0  1  N  N  N  10.490  21.031  -0.082   1.408   1.474   1.713  H11  RYM  29  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RYM  C1   C6   DOUB  Y  N   1  
RYM  C1   C2   SING  Y  N   2  
RYM  C6   C5   SING  Y  N   3  
RYM  C2   C3   DOUB  Y  N   4  
RYM  C5   N1   SING  Y  N   5  
RYM  C5   C4   DOUB  Y  N   6  
RYM  N1   C7   DOUB  Y  N   7  
RYM  C3   C4   SING  Y  N   8  
RYM  C4   N2   SING  Y  N   9  
RYM  C7   N2   SING  Y  N  10  
RYM  N2   C8   SING  N  N  11  
RYM  C8   C9   SING  N  N  12  
RYM  C10  C9   DOUB  Y  N  13  
RYM  C10  C11  SING  Y  N  14  
RYM  C9   C14  SING  Y  N  15  
RYM  C11  C12  DOUB  Y  N  16  
RYM  C14  C13  DOUB  Y  N  17  
RYM  C12  C13  SING  Y  N  18  
RYM  C12  C15  SING  N  N  19  
RYM  C15  N3   TRIP  N  N  20  
RYM  C6   H1   SING  N  N  21  
RYM  C7   H2   SING  N  N  22  
RYM  C8   H3   SING  N  N  23  
RYM  C8   H4   SING  N  N  24  
RYM  C10  H5   SING  N  N  25  
RYM  C13  H6   SING  N  N  26  
RYM  C1   H7   SING  N  N  27  
RYM  C11  H8   SING  N  N  28  
RYM  C14  H9   SING  N  N  29  
RYM  C2   H10  SING  N  N  30  
RYM  C3   H11  SING  N  N  31  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RYM  InChI             InChI                 1.03   "InChI=1S/C15H11N3/c16-9-12-5-7-13(8-6-12)10-18-11-17-14-3-1-2-4-15(14)18/h1-8,11H,10H2"  
RYM  InChIKey          InChI                 1.03   KZMYEQMVROHICO-UHFFFAOYSA-N  
RYM  SMILES_CANONICAL  CACTVS                3.385  "N#Cc1ccc(Cn2cnc3ccccc23)cc1"  
RYM  SMILES            CACTVS                3.385  "N#Cc1ccc(Cn2cnc3ccccc23)cc1"  
RYM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1ccc2c(c1)ncn2Cc3ccc(cc3)C#N"  
RYM  SMILES            "OpenEye OEToolkits"  2.0.6  "c1ccc2c(c1)ncn2Cc3ccc(cc3)C#N"  
#
_pdbx_chem_comp_identifier.comp_id          RYM
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "4-(benzimidazol-1-ylmethyl)benzenecarbonitrile"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RYM  "Create component"  2020-03-02  RCSB  
RYM  "Initial release"   2020-07-01  RCSB  
##
