data_SCM
# 
_chem_comp.id                                    SCM 
_chem_comp.name                                  SPECTINOMYCIN 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H24 N2 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "ACTINOSPECTACIN; ESPECTINOMICINA; CHX-3101" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2000-08-25 
_chem_comp.pdbx_modified_date                    2020-05-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        332.350 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SCM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1FJG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SCM O1   O1   O 0 1 N N N 197.762 126.436 -3.695 2.090  1.477  -0.607 O1   SCM 1  
SCM C2   C2   C 0 1 N N R 196.714 125.759 -2.981 3.482  1.300  -0.862 C2   SCM 2  
SCM C2M  C2M  C 0 1 N N N 196.814 124.258 -3.233 3.856  2.008  -2.165 C2M  SCM 3  
SCM C3   C3   C 0 1 N N N 195.299 126.223 -3.395 3.801  -0.195 -0.986 C3   SCM 4  
SCM C4   C4   C 0 1 N N N 195.196 127.643 -3.932 3.315  -0.906 0.290  C4   SCM 5  
SCM O4   O4   O 0 1 N N N 194.129 128.112 -4.245 4.002  -1.715 0.866  O4   SCM 6  
SCM C5   C5   C 0 1 N N S 196.464 128.426 -4.149 1.928  -0.507 0.767  C5   SCM 7  
SCM O5   O5   O 0 1 N N N 196.281 129.790 -3.797 1.709  -0.975 2.100  O5   SCM 8  
SCM C6   C6   C 0 1 N N S 197.618 127.784 -3.362 1.826  1.021  0.716  C6   SCM 9  
SCM O1B  O1B  O 0 1 N N N 196.792 128.499 -5.554 0.967  -1.077 -0.122 O1B  SCM 10 
SCM O2B  O2B  O 0 1 N N N 198.871 128.435 -3.608 0.531  1.439  1.131  O2B  SCM 11 
SCM C7   C7   C 0 1 N N R 198.023 129.210 -5.754 -0.325 -0.643 0.307  C7   SCM 12 
SCM C8   C8   C 0 1 N N S 198.300 129.278 -7.251 -1.384 -1.264 -0.608 C8   SCM 13 
SCM N8   N8   N 0 1 N N N 197.160 130.010 -7.883 -1.309 -2.729 -0.516 N8   SCM 14 
SCM C8M  C8M  C 0 1 N N N 197.377 130.272 -9.304 -1.848 -3.259 -1.775 C8M  SCM 15 
SCM C9   C9   C 0 1 N N S 199.663 129.990 -7.483 -2.776 -0.799 -0.178 C9   SCM 16 
SCM O9   O9   O 0 1 N N N 199.612 131.287 -6.973 -3.018 -1.198 1.173  O9   SCM 17 
SCM C10  C10  C 0 1 N N R 200.787 129.233 -6.764 -2.852 0.727  -0.281 C10  SCM 18 
SCM N10  N10  N 0 1 N N N 202.034 129.911 -6.972 -4.191 1.179  0.121  N10  SCM 19 
SCM C1M  C1M  C 0 1 N N N 202.965 128.940 -7.480 -5.056 1.036  -1.057 C1M  SCM 20 
SCM C11  C11  C 0 1 N N S 200.489 129.195 -5.260 -1.804 1.348  0.643  C11  SCM 21 
SCM O11  O11  O 0 1 N N N 201.530 128.491 -4.610 -1.867 2.774  0.578  O11  SCM 22 
SCM C12  C12  C 0 1 N N R 199.158 128.470 -5.028 -0.410 0.882  0.230  C12  SCM 23 
SCM H2   H2   H 0 1 N N N 196.852 126.003 -1.917 4.058  1.726  -0.040 H2   SCM 24 
SCM H2M1 1H2M H 0 0 N N N 195.942 123.754 -2.792 3.635  3.072  -2.077 H2M1 SCM 25 
SCM H2M2 2H2M H 0 0 N N N 197.734 123.870 -2.772 4.919  1.873  -2.361 H2M2 SCM 26 
SCM H2M3 3H2M H 0 0 N N N 196.838 124.068 -4.316 3.278  1.584  -2.987 H2M3 SCM 27 
SCM H31  1H3  H 0 1 N N N 194.694 126.203 -2.476 3.288  -0.610 -1.854 H31  SCM 28 
SCM H32  2H3  H 0 1 N N N 194.950 125.546 -4.188 4.877  -0.335 -1.092 H32  SCM 29 
SCM HO5  HO5  H 0 1 N N N 196.240 129.871 -2.851 1.800  -1.937 2.077  HO5  SCM 30 
SCM H6   H6   H 0 1 N N N 197.357 127.892 -2.299 2.568  1.447  1.391  H6   SCM 31 
SCM H7   H7   H 0 1 N N N 197.954 130.230 -5.348 -0.496 -0.966 1.334  H7   SCM 32 
SCM H8   H8   H 0 1 N N N 198.375 128.279 -7.705 -1.201 -0.956 -1.637 H8   SCM 33 
SCM HN8  HN8  H 0 1 N N N 196.335 129.453 -7.787 -0.329 -2.968 -0.497 HN8  SCM 34 
SCM H8M1 1H8M H 0 0 N N N 196.543 129.852 -9.886 -2.881 -2.931 -1.895 H8M1 SCM 35 
SCM H8M2 2H8M H 0 0 N N N 198.320 129.804 -9.623 -1.251 -2.892 -2.610 H8M2 SCM 36 
SCM H8M3 3H8M H 0 0 N N N 197.432 131.358 -9.473 -1.814 -4.348 -1.755 H8M3 SCM 37 
SCM H9   H9   H 0 1 N N N 199.861 130.013 -8.565 -3.527 -1.245 -0.830 H9   SCM 38 
SCM HO9  HO9  H 0 1 N N N 199.600 131.254 -6.024 -3.902 -0.883 1.403  HO9  SCM 39 
SCM H10  H10  H 0 1 N N N 200.850 128.210 -7.163 -2.658 1.032  -1.309 H10  SCM 40 
SCM HN1  HN1  H 0 1 N N N 201.918 130.656 -7.629 -4.118 2.168  0.309  HN1  SCM 41 
SCM H1M1 1H1M H 0 0 N N N 202.518 127.937 -7.420 -4.711 1.705  -1.845 H1M1 SCM 42 
SCM H1M2 2H1M H 0 0 N N N 203.887 128.967 -6.880 -5.019 0.006  -1.412 H1M2 SCM 43 
SCM H1M3 3H1M H 0 0 N N N 203.203 129.173 -8.528 -6.081 1.290  -0.788 H1M3 SCM 44 
SCM H11  H11  H 0 1 N N N 200.422 130.218 -4.860 -2.008 1.022  1.663  H11  SCM 45 
SCM HO1  HO1  H 0 1 N N N 202.238 128.333 -5.224 -2.723 3.033  0.945  HO1  SCM 46 
SCM H12  H12  H 0 1 N N N 199.233 127.445 -5.421 -0.201 1.236  -0.780 H12  SCM 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SCM O1  C2   SING N N 1  
SCM O1  C6   SING N N 2  
SCM C2  C2M  SING N N 3  
SCM C2  C3   SING N N 4  
SCM C2  H2   SING N N 5  
SCM C2M H2M1 SING N N 6  
SCM C2M H2M2 SING N N 7  
SCM C2M H2M3 SING N N 8  
SCM C3  C4   SING N N 9  
SCM C3  H31  SING N N 10 
SCM C3  H32  SING N N 11 
SCM C4  O4   DOUB N N 12 
SCM C4  C5   SING N N 13 
SCM C5  O5   SING N N 14 
SCM C5  C6   SING N N 15 
SCM C5  O1B  SING N N 16 
SCM O5  HO5  SING N N 17 
SCM C6  O2B  SING N N 18 
SCM C6  H6   SING N N 19 
SCM O1B C7   SING N N 20 
SCM O2B C12  SING N N 21 
SCM C7  C8   SING N N 22 
SCM C7  C12  SING N N 23 
SCM C7  H7   SING N N 24 
SCM C8  N8   SING N N 25 
SCM C8  C9   SING N N 26 
SCM C8  H8   SING N N 27 
SCM N8  C8M  SING N N 28 
SCM N8  HN8  SING N N 29 
SCM C8M H8M1 SING N N 30 
SCM C8M H8M2 SING N N 31 
SCM C8M H8M3 SING N N 32 
SCM C9  O9   SING N N 33 
SCM C9  C10  SING N N 34 
SCM C9  H9   SING N N 35 
SCM O9  HO9  SING N N 36 
SCM C10 N10  SING N N 37 
SCM C10 C11  SING N N 38 
SCM C10 H10  SING N N 39 
SCM N10 C1M  SING N N 40 
SCM N10 HN1  SING N N 41 
SCM C1M H1M1 SING N N 42 
SCM C1M H1M2 SING N N 43 
SCM C1M H1M3 SING N N 44 
SCM C11 O11  SING N N 45 
SCM C11 C12  SING N N 46 
SCM C11 H11  SING N N 47 
SCM O11 HO1  SING N N 48 
SCM C12 H12  SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SCM SMILES           ACDLabs              10.04 "O=C1C2(OC3C(NC)C(O)C(NC)C(O)C3OC2OC(C1)C)O"                                                                                                                     
SCM SMILES_CANONICAL CACTVS               3.341 "CN[C@@H]1[C@H](O)[C@H](NC)[C@H]2O[C@]3(O)[C@@H](O[C@H](C)CC3=O)O[C@@H]2[C@H]1O"                                                                                 
SCM SMILES           CACTVS               3.341 "CN[CH]1[CH](O)[CH](NC)[CH]2O[C]3(O)[CH](O[CH](C)CC3=O)O[CH]2[CH]1O"                                                                                             
SCM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H]1CC(=O)[C@]2([C@@H](O1)O[C@@H]3[C@H]([C@@H]([C@@H]([C@@H]([C@H]3O2)NC)O)NC)O)O"                                                                          
SCM SMILES           "OpenEye OEToolkits" 1.5.0 "CC1CC(=O)C2(C(O1)OC3C(C(C(C(C3O2)NC)O)NC)O)O"                                                                                                                   
SCM InChI            InChI                1.03  "InChI=1S/C14H24N2O7/c1-5-4-6(17)14(20)13(21-5)22-12-10(19)7(15-2)9(18)8(16-3)11(12)23-14/h5,7-13,15-16,18-20H,4H2,1-3H3/t5-,7-,8+,9+,10+,11-,12-,13+,14+/m1/s1" 
SCM InChIKey         InChI                1.03  UNFWWIHTNXNPBV-WXKVUWSESA-N                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           SCM 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           ACDLabs 
_pdbx_chem_comp_identifier.program_version   10.04 
_pdbx_chem_comp_identifier.identifier        "(2R,4aR,5aR,6S,7S,8R,9S,9aR,10aS)-4a,7,9-trihydroxy-2-methyl-6,8-bis(methylamino)decahydro-4H-pyrano[2,3-b][1,4]benzodioxin-4-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SCM "Create component"  2000-08-25 RCSB 
SCM "Modify descriptor" 2011-06-04 RCSB 
SCM "Modify synonyms"   2020-05-27 PDBE 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 SCM ACTINOSPECTACIN ? ? 
2 SCM ESPECTINOMICINA ? ? 
3 SCM CHX-3101        ? ? 
# 
