data_SJM
#

_chem_comp.id                                   SJM
_chem_comp.name                                 "~{N}-[6-methyl-5-[3-[2-[[(3~{S})-piperidin-3-yl]amino]pyrimidin-4-yl]pyridin-2-yl]oxy-naphthalen-1-yl]but-2-ynamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C29 H28 N6 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-03-10
_chem_comp.pdbx_modified_date                   2020-12-04
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       492.572
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SJM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6W3A
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SJM  C4   C1   C  0  1  N  N  N  108.618  -15.613  51.891   6.285  -1.183  -0.788  C4   SJM   1  
SJM  C14  C2   C  0  1  Y  N  N  108.547  -19.865  50.596   2.303   0.009   2.681  C14  SJM   2  
SJM  C11  C3   C  0  1  Y  N  N  106.838  -19.580  52.755   1.767   0.137  -0.045  C11  SJM   3  
SJM  C7   C4   C  0  1  Y  N  N  107.808  -17.398  53.264   3.948  -0.856  -0.507  C7   SJM   4  
SJM  C8   C5   C  0  1  Y  N  N  106.930  -17.298  54.324   3.668  -0.785  -1.855  C8   SJM   5  
SJM  C9   C6   C  0  1  Y  N  N  106.023  -18.312  54.613   2.459  -0.262  -2.304  C9   SJM   6  
SJM  C10  C7   C  0  1  Y  N  N  105.971  -19.437  53.850   1.521   0.192  -1.427  C10  SJM   7  
SJM  C12  C8   C  0  1  Y  N  N  107.770  -18.556  52.449   2.994  -0.392   0.424  C12  SJM   8  
SJM  C13  C9   C  0  1  Y  N  N  108.625  -18.730  51.348   3.241  -0.446   1.805  C13  SJM   9  
SJM  C3   C10  C  0  1  N  N  N  109.499  -14.506  51.673   7.547  -1.639  -0.289  C3   SJM  10  
SJM  C1   C11  C  0  1  N  N  N  111.116  -12.456  51.241   9.880  -2.481   0.632  C1   SJM  11  
SJM  C15  C12  C  0  1  Y  N  N  107.631  -20.871  50.892   1.093   0.531   2.231  C15  SJM  12  
SJM  C16  C13  C  0  1  Y  N  N  106.784  -20.744  51.964   0.814   0.600   0.885  C16  SJM  13  
SJM  C18  C14  C  0  1  Y  N  N  106.086  -23.006  52.404  -0.435   2.443   0.210  C18  SJM  14  
SJM  C19  C15  C  0  1  Y  N  N  105.061  -23.925  52.112  -1.638   3.010  -0.228  C19  SJM  15  
SJM  C2   C16  C  0  1  N  N  N  110.217  -13.596  51.482   8.582  -2.012   0.119  C2   SJM  16  
SJM  C20  C17  C  0  1  Y  N  N  105.345  -25.287  52.231  -1.687   4.385  -0.470  C20  SJM  17  
SJM  C21  C18  C  0  1  Y  N  N  106.614  -25.677  52.627  -0.537   5.130  -0.265  C21  SJM  18  
SJM  C22  C19  C  0  1  Y  N  N  107.565  -24.712  52.895   0.613   4.498   0.169  C22  SJM  19  
SJM  C24  C20  C  0  1  Y  N  N  103.694  -23.520  51.683  -2.839   2.167  -0.431  C24  SJM  20  
SJM  C25  C21  C  0  1  Y  N  N  103.266  -22.186  51.646  -4.040   2.734  -0.869  C25  SJM  21  
SJM  C26  C22  C  0  1  Y  N  N  101.980  -21.899  51.233  -5.134   1.908  -1.046  C26  SJM  22  
SJM  C28  C23  C  0  1  Y  N  N  101.601  -24.147  50.930  -3.864   0.101  -0.383  C28  SJM  23  
SJM  C31  C24  C  0  1  N  N  S  101.141  -26.560  50.645  -4.956  -2.111  -0.329  C31  SJM  24  
SJM  C33  C25  C  0  1  N  N  N   99.895  -27.439  50.511  -4.506  -3.548  -0.610  C33  SJM  25  
SJM  C34  C26  C  0  1  N  N  N  100.298  -28.913  50.433  -5.741  -4.443  -0.749  C34  SJM  26  
SJM  C35  C27  C  0  1  N  N  N  101.269  -29.105  49.268  -6.576  -4.353   0.531  C35  SJM  27  
SJM  C37  C28  C  0  1  N  N  N  102.138  -26.868  49.522  -5.814  -2.089   0.938  C37  SJM  28  
SJM  C38  C29  C  0  1  N  N  N  107.605  -22.091  50.007   0.078   1.025   3.229  C38  SJM  29  
SJM  N23  N1   N  0  1  Y  N  N  107.281  -23.430  52.779   0.635   3.197   0.391  N23  SJM  30  
SJM  N27  N2   N  0  1  Y  N  N  101.181  -22.893  50.885  -5.014   0.613  -0.797  N27  SJM  31  
SJM  N29  N3   N  0  1  Y  N  N  102.828  -24.462  51.318  -2.791   0.855  -0.206  N29  SJM  32  
SJM  N30  N4   N  0  1  N  N  N  100.731  -25.156  50.557  -3.780  -1.259  -0.139  N30  SJM  33  
SJM  N36  N5   N  0  1  N  N  N  102.470  -28.298  49.512  -6.982  -2.960   0.755  N36  SJM  34  
SJM  N6   N6   N  0  1  N  N  N  108.679  -16.326  53.037   5.163  -1.382  -0.067  N6   SJM  35  
SJM  O17  O1   O  0  1  N  N  N  105.854  -21.674  52.305  -0.369   1.111   0.456  O17  SJM  36  
SJM  O5   O2   O  0  1  N  N  N  107.813  -15.909  51.030   6.225  -0.612  -1.860  O5   SJM  37  
SJM  H1   H1   H  0  1  N  N  N  109.210  -19.986  49.752   2.498  -0.041   3.743  H1   SJM  38  
SJM  H2   H2   H  0  1  N  N  N  106.948  -16.413  54.943   4.396  -1.138  -2.570  H2   SJM  39  
SJM  H3   H3   H  0  1  N  N  N  105.352  -18.205  55.453   2.261  -0.216  -3.364  H3   SJM  40  
SJM  H4   H4   H  0  1  N  N  N  105.264  -20.219  54.086   0.588   0.593  -1.794  H4   SJM  41  
SJM  H5   H5   H  0  1  N  N  N  109.344  -17.965  51.097   4.174  -0.848   2.172  H5   SJM  42  
SJM  H6   H6   H  0  1  N  N  N  111.615  -12.177  52.181  10.664  -2.233  -0.083  H6   SJM  43  
SJM  H7   H7   H  0  1  N  N  N  111.873  -12.737  50.494  10.091  -1.996   1.585  H7   SJM  44  
SJM  H8   H8   H  0  1  N  N  N  110.532  -11.601  50.868   9.846  -3.561   0.774  H8   SJM  45  
SJM  H9   H9   H  0  1  N  N  N  104.586  -26.026  52.017  -2.598   4.855  -0.808  H9   SJM  46  
SJM  H10  H10  H  0  1  N  N  N  106.857  -26.725  52.725  -0.539   6.195  -0.442  H10  SJM  47  
SJM  H11  H11  H  0  1  N  N  N  108.555  -25.012  53.204   1.510   5.079   0.328  H11  SJM  48  
SJM  H12  H12  H  0  1  N  N  N  103.935  -21.390  51.938  -4.111   3.794  -1.065  H12  SJM  49  
SJM  H13  H13  H  0  1  N  N  N  101.632  -20.877  51.195  -6.076   2.313  -1.382  H13  SJM  50  
SJM  H32  H14  H  0  1  N  N  N  101.619  -26.755  51.616  -5.541  -1.742  -1.171  H32  SJM  51  
SJM  H14  H15  H  0  1  N  N  N   99.351  -27.162  49.596  -3.931  -3.575  -1.535  H14  SJM  52  
SJM  H15  H16  H  0  1  N  N  N   99.245  -27.285  51.385  -3.888  -3.904   0.214  H15  SJM  53  
SJM  H16  H17  H  0  1  N  N  N   99.403  -29.532  50.272  -6.338  -4.110  -1.597  H16  SJM  54  
SJM  H17  H18  H  0  1  N  N  N  100.786  -29.212  51.372  -5.427  -5.475  -0.907  H17  SJM  55  
SJM  H18  H19  H  0  1  N  N  N  100.791  -28.782  48.332  -7.464  -4.978   0.430  H18  SJM  56  
SJM  H19  H20  H  0  1  N  N  N  101.547  -30.166  49.190  -5.983  -4.699   1.377  H19  SJM  57  
SJM  H20  H21  H  0  1  N  N  N  103.056  -26.284  49.682  -5.224  -2.446   1.782  H20  SJM  58  
SJM  H21  H22  H  0  1  N  N  N  101.692  -26.593  48.555  -6.148  -1.070   1.133  H21  SJM  59  
SJM  H22  H23  H  0  1  N  N  N  108.301  -22.846  50.402   0.252   2.082   3.431  H22  SJM  60  
SJM  H23  H24  H  0  1  N  N  N  106.587  -22.506  49.985  -0.925   0.893   2.822  H23  SJM  61  
SJM  H24  H25  H  0  1  N  N  N  107.908  -21.811  48.987   0.172   0.458   4.155  H24  SJM  62  
SJM  H25  H26  H  0  1  N  N  N  100.489  -24.987  49.602  -2.942  -1.648   0.157  H25  SJM  63  
SJM  H26  H27  H  0  1  N  N  N  102.862  -28.551  50.397  -7.566  -2.628   0.002  H26  SJM  64  
SJM  H28  H29  H  0  1  N  N  N  109.356  -16.085  53.733   5.201  -1.891   0.758  H28  SJM  65  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SJM  C35  N36  SING  N  N   1  
SJM  C35  C34  SING  N  N   2  
SJM  N36  C37  SING  N  N   3  
SJM  C37  C31  SING  N  N   4  
SJM  C38  C15  SING  N  N   5  
SJM  C34  C33  SING  N  N   6  
SJM  C33  C31  SING  N  N   7  
SJM  N30  C31  SING  N  N   8  
SJM  N30  C28  SING  N  N   9  
SJM  C14  C15  DOUB  Y  N  10  
SJM  C14  C13  SING  Y  N  11  
SJM  N27  C28  DOUB  Y  N  12  
SJM  N27  C26  SING  Y  N  13  
SJM  C15  C16  SING  Y  N  14  
SJM  C28  N29  SING  Y  N  15  
SJM  O5   C4   DOUB  N  N  16  
SJM  C26  C25  DOUB  Y  N  17  
SJM  C1   C2   SING  N  N  18  
SJM  N29  C24  DOUB  Y  N  19  
SJM  C13  C12  DOUB  Y  N  20  
SJM  C2   C3   TRIP  N  N  21  
SJM  C25  C24  SING  Y  N  22  
SJM  C3   C4   SING  N  N  23  
SJM  C24  C19  SING  N  N  24  
SJM  C4   N6   SING  N  N  25  
SJM  C16  O17  SING  N  N  26  
SJM  C16  C11  DOUB  Y  N  27  
SJM  C19  C20  DOUB  Y  N  28  
SJM  C19  C18  SING  Y  N  29  
SJM  C20  C21  SING  Y  N  30  
SJM  O17  C18  SING  N  N  31  
SJM  C18  N23  DOUB  Y  N  32  
SJM  C12  C11  SING  Y  N  33  
SJM  C12  C7   SING  Y  N  34  
SJM  C21  C22  DOUB  Y  N  35  
SJM  C11  C10  SING  Y  N  36  
SJM  N23  C22  SING  Y  N  37  
SJM  N6   C7   SING  N  N  38  
SJM  C7   C8   DOUB  Y  N  39  
SJM  C10  C9   DOUB  Y  N  40  
SJM  C8   C9   SING  Y  N  41  
SJM  C14  H1   SING  N  N  42  
SJM  C8   H2   SING  N  N  43  
SJM  C9   H3   SING  N  N  44  
SJM  C10  H4   SING  N  N  45  
SJM  C13  H5   SING  N  N  46  
SJM  C1   H6   SING  N  N  47  
SJM  C1   H7   SING  N  N  48  
SJM  C1   H8   SING  N  N  49  
SJM  C20  H9   SING  N  N  50  
SJM  C21  H10  SING  N  N  51  
SJM  C22  H11  SING  N  N  52  
SJM  C25  H12  SING  N  N  53  
SJM  C26  H13  SING  N  N  54  
SJM  C31  H32  SING  N  N  55  
SJM  C33  H14  SING  N  N  56  
SJM  C33  H15  SING  N  N  57  
SJM  C34  H16  SING  N  N  58  
SJM  C34  H17  SING  N  N  59  
SJM  C35  H18  SING  N  N  60  
SJM  C35  H19  SING  N  N  61  
SJM  C37  H20  SING  N  N  62  
SJM  C37  H21  SING  N  N  63  
SJM  C38  H22  SING  N  N  64  
SJM  C38  H23  SING  N  N  65  
SJM  C38  H24  SING  N  N  66  
SJM  N30  H25  SING  N  N  67  
SJM  N36  H26  SING  N  N  68  
SJM  N6   H28  SING  N  N  69  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SJM  InChI             InChI                 1.03   "InChI=1S/C29H28N6O2/c1-3-7-26(36)34-24-11-4-9-22-21(24)13-12-19(2)27(22)37-28-23(10-6-16-31-28)25-14-17-32-29(35-25)33-20-8-5-15-30-18-20/h4,6,9-14,16-17,20,30H,5,8,15,18H2,1-2H3,(H,34,36)(H,32,33,35)/t20-/m0/s1"  
SJM  InChIKey          InChI                 1.03   NYJNJBQWBJXYJJ-FQEVSTJZSA-N  
SJM  SMILES_CANONICAL  CACTVS                3.385  "CC#CC(=O)Nc1cccc2c(Oc3ncccc3c4ccnc(N[C@H]5CCCNC5)n4)c(C)ccc12"  
SJM  SMILES            CACTVS                3.385  "CC#CC(=O)Nc1cccc2c(Oc3ncccc3c4ccnc(N[CH]5CCCNC5)n4)c(C)ccc12"  
SJM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC#CC(=O)Nc1cccc2c1ccc(c2Oc3c(cccn3)c4ccnc(n4)N[C@H]5CCCNC5)C"  
SJM  SMILES            "OpenEye OEToolkits"  2.0.7  "CC#CC(=O)Nc1cccc2c1ccc(c2Oc3c(cccn3)c4ccnc(n4)NC5CCCNC5)C"  
#
_pdbx_chem_comp_identifier.comp_id          SJM
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{N}-[6-methyl-5-[3-[2-[[(3~{S})-piperidin-3-yl]amino]pyrimidin-4-yl]pyridin-2-yl]oxy-naphthalen-1-yl]but-2-ynamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SJM  "Create component"  2020-03-10  RCSB  
SJM  "Initial release"   2020-12-09  RCSB  
##
