data_SLM
#

_chem_comp.id                                   SLM
_chem_comp.name                                 "(2S,4S,5R,6R)-5-acetamido-2,4-dihydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxane-2-carboxamide"
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C11 H20 N2 O8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        SIALYLAMIDE
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-11-04
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       308.285
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SLM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2XWO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     SLM
_pdbx_chem_comp_synonyms.name        SIALYLAMIDE
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SLM  C1    C1    C  0  1  N  N  N   7.616   -9.161  -11.044   1.297   3.157   0.372  C1    SLM   1  
SLM  C2    C2    C  0  1  N  N  S   8.874   -8.946  -11.915   0.436   2.082  -0.240  C2    SLM   2  
SLM  C3    C3    C  0  1  N  N  N  10.068   -8.534  -11.011  -1.018   2.284   0.193  C3    SLM   3  
SLM  C4    C4    C  0  1  N  N  S  11.236   -8.067  -11.863  -1.877   1.155  -0.384  C4    SLM   4  
SLM  C5    C5    C  0  1  N  N  R  10.757   -6.932  -12.741  -1.312  -0.190   0.083  C5    SLM   5  
SLM  C6    C6    C  0  1  N  N  R   9.622   -7.467  -13.625   0.153  -0.297  -0.346  C6    SLM   6  
SLM  C7    C7    C  0  1  N  N  R   9.063   -6.475  -14.623   0.741  -1.612   0.169  C7    SLM   7  
SLM  C8    C8    C  0  1  N  N  R   7.940   -7.102  -15.454   2.236  -1.662  -0.152  C8    SLM   8  
SLM  C9    C9    C  0  1  N  N  N   7.440   -6.146  -16.493   2.825  -2.977   0.364  C9    SLM   9  
SLM  C10   C10   C  0  1  N  N  N  12.368   -5.194  -13.416  -3.221  -1.705   0.057  C10   SLM  10  
SLM  C11   C11   C  0  1  N  N  N  13.448   -4.798  -14.433  -4.011  -2.826  -0.566  C11   SLM  11  
SLM  N5    N5    N  0  1  N  N  N  11.854   -6.395  -13.584  -2.081  -1.281  -0.523  N5    SLM  12  
SLM  O1A   O1A   O  0  1  N  N  N   7.248  -10.308  -10.772   2.264   2.852   1.038  O1A   SLM  13  
SLM  O2    O2    O  0  1  N  Y  N   9.164  -10.151  -12.617   0.523   2.156  -1.665  O2    SLM  14  
SLM  O4    O4    O  0  1  N  N  N  12.326   -7.681  -11.002  -3.223   1.295   0.076  O4    SLM  15  
SLM  O6    O6    O  0  1  N  N  N   8.563   -7.901  -12.767   0.889   0.800   0.199  O6    SLM  16  
SLM  O7    O7    O  0  1  N  N  N   8.550   -5.322  -13.973   0.554  -1.696   1.583  O7    SLM  17  
SLM  O8    O8    O  0  1  N  N  N   8.396   -8.336  -16.058   2.423  -1.579  -1.566  O8    SLM  18  
SLM  O9    O9    O  0  1  N  N  N   8.362   -5.747  -17.498   4.240  -2.975   0.169  O9    SLM  19  
SLM  N1    N1    N  0  1  N  N  N   6.999   -8.030  -10.619   0.996   4.455   0.176  N1    SLM  20  
SLM  O10   O10   O  0  1  N  N  N  12.012   -4.407  -12.545  -3.611  -1.184   1.081  O10   SLM  21  
SLM  H11N  H11N  H  0  0  N  N  N   7.494   -7.234  -10.968   0.225   4.699  -0.360  H11N  SLM  22  
SLM  H12N  H12N  H  0  0  N  N  N   6.179   -7.997  -10.047   1.550   5.147   0.570  H12N  SLM  23  
SLM  H32   H31C  H  0  1  N  N  N   9.754   -7.715  -10.347  -1.079   2.269   1.281  H32   SLM  24  
SLM  H31   H32C  H  0  1  N  N  N  10.383   -9.403  -10.415  -1.379   3.243  -0.179  H31   SLM  25  
SLM  HO2   H2    H  0  1  N  Y  N   9.229   -9.968  -13.547   1.418   2.036  -2.011  HO2   SLM  26  
SLM  H4    H4    H  0  1  N  N  N  11.608   -8.870  -12.516  -1.855   1.201  -1.473  H4    SLM  27  
SLM  H5    H5    H  0  1  N  N  N  10.402   -6.105  -12.109  -1.380  -0.256   1.169  H5    SLM  28  
SLM  HO4   HA    H  0  1  N  Y  N  13.121   -7.596  -11.515  -3.641   2.128  -0.179  HO4   SLM  29  
SLM  H6    H6    H  0  1  N  N  N  10.052   -8.282  -14.226   0.216  -0.272  -1.434  H6    SLM  30  
SLM  HN5   HB    H  0  1  N  N  N  12.220   -6.972  -14.314  -1.769  -1.697  -1.341  HN5   SLM  31  
SLM  H7    H7    H  0  1  N  N  N   9.895   -6.186  -15.282   0.238  -2.449  -0.314  H7    SLM  32  
SLM  H8    H8    H  0  1  N  N  N   7.098   -7.332  -14.784   2.740  -0.825   0.332  H8    SLM  33  
SLM  HO7   HC    H  0  1  N  Y  N   8.435   -5.504  -13.048   0.977  -0.981   2.079  HO7   SLM  34  
SLM  H92   H91C  H  0  1  N  N  N   6.598   -6.636  -17.004   2.604  -3.083   1.426  H92   SLM  35  
SLM  H91   H92C  H  0  1  N  N  N   7.191   -5.225  -15.945   2.384  -3.811  -0.183  H91   SLM  36  
SLM  HO8   HD    H  0  1  N  Y  N   8.496   -8.213  -16.995   2.001  -2.294  -2.061  HO8   SLM  37  
SLM  HO9   H9    H  0  1  N  Y  N   7.908   -5.658  -18.328   4.681  -3.780   0.473  HO9   SLM  38  
SLM  H111  H111  H  0  0  N  N  N  12.995   -4.703  -15.431  -3.509  -3.165  -1.472  H111  SLM  39  
SLM  H113  H112  H  0  0  N  N  N  13.893   -3.836  -14.139  -4.086  -3.654   0.139  H113  SLM  40  
SLM  H112  H113  H  0  0  N  N  N  14.230   -5.571  -14.457  -5.011  -2.471  -0.816  H112  SLM  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SLM  C1   C2    SING  N  N   1  
SLM  C1   O1A   DOUB  N  N   2  
SLM  C1   N1    SING  N  N   3  
SLM  C2   C3    SING  N  N   4  
SLM  C2   O2    SING  N  N   5  
SLM  C2   O6    SING  N  N   6  
SLM  C3   C4    SING  N  N   7  
SLM  C4   C5    SING  N  N   8  
SLM  C4   O4    SING  N  N   9  
SLM  C5   C6    SING  N  N  10  
SLM  C5   N5    SING  N  N  11  
SLM  C6   C7    SING  N  N  12  
SLM  C6   O6    SING  N  N  13  
SLM  C7   C8    SING  N  N  14  
SLM  C7   O7    SING  N  N  15  
SLM  C8   C9    SING  N  N  16  
SLM  C8   O8    SING  N  N  17  
SLM  C9   O9    SING  N  N  18  
SLM  C10  C11   SING  N  N  19  
SLM  C10  N5    SING  N  N  20  
SLM  C10  O10   DOUB  N  N  21  
SLM  N1   H11N  SING  N  N  22  
SLM  N1   H12N  SING  N  N  23  
SLM  C3   H32   SING  N  N  24  
SLM  C3   H31   SING  N  N  25  
SLM  O2   HO2   SING  N  N  26  
SLM  C4   H4    SING  N  N  27  
SLM  C5   H5    SING  N  N  28  
SLM  O4   HO4   SING  N  N  29  
SLM  C6   H6    SING  N  N  30  
SLM  N5   HN5   SING  N  N  31  
SLM  C7   H7    SING  N  N  32  
SLM  C8   H8    SING  N  N  33  
SLM  O7   HO7   SING  N  N  34  
SLM  C9   H92   SING  N  N  35  
SLM  C9   H91   SING  N  N  36  
SLM  O8   HO8   SING  N  N  37  
SLM  O9   HO9   SING  N  N  38  
SLM  C11  H111  SING  N  N  39  
SLM  C11  H113  SING  N  N  40  
SLM  C11  H112  SING  N  N  41  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SLM  SMILES            ACDLabs               10.04  "O=C(N)C1(O)OC(C(O)C(O)CO)C(NC(=O)C)C(O)C1"  
SLM  SMILES_CANONICAL  CACTVS                3.352  "CC(=O)N[C@@H]1[C@@H](O)C[C@](O)(O[C@H]1[C@H](O)[C@H](O)CO)C(N)=O"  
SLM  SMILES            CACTVS                3.352  "CC(=O)N[CH]1[CH](O)C[C](O)(O[CH]1[CH](O)[CH](O)CO)C(N)=O"  
SLM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.6.1  "CC(=O)N[C@@H]1[C@H](C[C@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)N)O)O"  
SLM  SMILES            "OpenEye OEToolkits"  1.6.1  "CC(=O)NC1C(CC(OC1C(C(CO)O)O)(C(=O)N)O)O"  
SLM  InChI             InChI                 1.03   "InChI=1S/C11H20N2O8/c1-4(15)13-7-5(16)2-11(20,10(12)19)21-9(7)8(18)6(17)3-14/h5-9,14,16-18,20H,2-3H2,1H3,(H2,12,19)(H,13,15)/t5-,6+,7+,8+,9+,11-/m0/s1"  
SLM  InChIKey          InChI                 1.03   PKSULYZGXFBQIQ-PFQGKNLYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SLM  "SYSTEMATIC NAME"  ACDLabs               10.04  
;(2S,4S,5R,6R)-5-(acetylamino)-2,4-dihydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]tetrahydro-2H-pyran-2-carboxamide
(non-preferred name)
;
  
SLM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "(2S,4S,5R,6R)-5-acetamido-2,4-dihydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxane-2-carboxamide"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
SLM  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
SLM  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
SLM  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
SLM  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SLM  "Create component"          2010-11-04  EBI   
SLM  "Modify descriptor"         2011-06-04  RCSB  
SLM  "Other modification"        2020-07-03  RCSB  
SLM  "Modify name"               2020-07-17  RCSB  
SLM  "Modify synonyms"           2020-07-17  RCSB  
SLM  "Modify internal type"      2020-07-17  RCSB  
SLM  "Modify linking type"       2020-07-17  RCSB  
SLM  "Modify atom id"            2020-07-17  RCSB  
SLM  "Modify component atom id"  2020-07-17  RCSB  
SLM  "Modify leaving atom flag"  2020-07-17  RCSB  
##
