data_VMM
# 
_chem_comp.id                                    VMM 
_chem_comp.name                                  "ETX0462 (Bound form)" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H16 N6 O7 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         
;(4R,7S)-7-(N'-hydroxy-N-methylcarbamimidoyl)-1-methyl-4-[(sulfooxy)amino]-1,4,5,7-tetrahydro-6H-pyrazolo[3,4-c]pyridine-6-carboxylic acid
;
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-08-27 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        364.335 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VMM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7JWL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VMM C16 C1  C 0 1 Y N N N N N 4.658  3.269 -17.515 -0.304 -0.839 -0.004 C16 VMM 1  
VMM C17 C2  C 0 1 Y N N N N N 3.891  2.158 -17.069 -0.859 -2.060 -0.384 C17 VMM 2  
VMM C20 C3  C 0 1 N N N N N N 6.417  1.964 -14.596 2.476  -3.062 0.587  C20 VMM 3  
VMM C21 C4  C 0 1 Y N N N N N 5.706  3.320 -16.636 0.973  -1.069 0.396  C21 VMM 4  
VMM C22 C5  C 0 1 N N N N N N 6.007  6.623 -17.257 1.993  2.320  0.067  C22 VMM 5  
VMM C01 C6  C 0 1 N N N N N N 9.180  6.030 -16.353 4.564  -0.217 -1.885 C01 VMM 6  
VMM C03 C7  C 0 1 N N N N N N 8.151  3.789 -17.055 3.232  -0.092 0.182  C03 VMM 7  
VMM C06 C8  C 0 1 N N S N N N 6.780  4.343 -16.695 1.906  0.009  0.892  C06 VMM 8  
VMM C08 C9  C 0 1 N N N N N N 5.851  4.850 -18.962 -0.160 1.468  0.875  C08 VMM 9  
VMM C09 C10 C 0 1 N N R N N N 4.483  4.194 -18.690 -0.961 0.518  -0.023 C09 VMM 10 
VMM N02 N1  N 0 1 N N N N N N 9.174  4.658 -16.849 3.275  -0.118 -1.195 N02 VMM 11 
VMM N04 N2  N 0 1 N N N N N N 8.186  2.592 -17.482 4.327  -0.156 0.864  N04 VMM 12 
VMM N07 N3  N 0 1 N N N N N N 6.245  5.350 -17.642 1.274  1.307  0.591  N07 VMM 13 
VMM N10 N4  N 0 1 N N N N N N 3.527  5.325 -18.457 -2.336 0.405  0.483  N10 VMM 14 
VMM N18 N5  N 0 1 Y N N N N N 4.423  1.592 -16.003 0.051  -2.990 -0.222 N18 VMM 15 
VMM N19 N6  N 0 1 Y N N N N N 5.576  2.322 -15.729 1.217  -2.383 0.269  N19 VMM 16 
VMM O05 O1  O 0 1 N N N N N N 9.592  2.280 -17.736 5.572  -0.252 0.197  O05 VMM 17 
VMM O11 O2  O 0 1 N N N N N N 2.288  4.803 -17.885 -3.276 0.147  -0.608 O11 VMM 18 
VMM O13 O3  O 0 1 N N N N N N 0.263  5.096 -16.440 -4.701 -0.686 1.076  O13 VMM 19 
VMM O14 O4  O 0 1 N N N N N N 2.506  6.245 -15.737 -5.226 1.420  0.156  O14 VMM 20 
VMM O15 O5  O 0 1 N N N N N N 1.221  7.129 -17.848 -5.458 -0.425 -1.292 O15 VMM 21 
VMM O23 O6  O 0 1 N N N N N N 6.258  7.061 -16.131 3.156  2.145  -0.237 O23 VMM 22 
VMM S12 S1  S 0 1 N N N N N N 1.503  5.939 -16.888 -4.725 0.018  -0.159 S12 VMM 23 
VMM H1  H1  H 0 1 N N N N N N 2.983  1.819 -17.545 -1.863 -2.213 -0.749 H1  VMM 24 
VMM H2  H2  H 0 1 N N N N N N 5.984  1.096 -14.077 2.501  -3.302 1.650  H2  VMM 25 
VMM H3  H3  H 0 1 N N N N N N 7.426  1.711 -14.954 2.549  -3.981 0.006  H3  VMM 26 
VMM H4  H4  H 0 1 N N N N N N 6.477  2.814 -13.901 3.313  -2.409 0.342  H4  VMM 27 
VMM H6  H6  H 0 1 N N N N N N 10.213 6.406 -16.326 4.399  -0.223 -2.963 H6  VMM 28 
VMM H7  H7  H 0 1 N N N N N N 8.576  6.663 -17.020 5.186  0.638  -1.618 H7  VMM 29 
VMM H8  H8  H 0 1 N N N N N N 8.755  6.055 -15.339 5.065  -1.138 -1.589 H8  VMM 30 
VMM H9  H9  H 0 1 N N N N N N 6.860  4.813 -15.704 2.053  -0.093 1.967  H9  VMM 31 
VMM H10 H10 H 0 1 N N N N N N 6.575  4.112 -19.338 -0.457 2.497  0.673  H10 VMM 32 
VMM H11 H11 H 0 1 N N N N N N 5.758  5.674 -19.685 -0.353 1.231  1.921  H11 VMM 33 
VMM H12 H12 H 0 1 N N N N N N 4.173  3.618 -19.575 -0.978 0.905  -1.042 H12 VMM 34 
VMM H13 H13 H 0 1 N N N N N N 10.078 4.295 -17.076 2.453  -0.070 -1.707 H13 VMM 35 
VMM H14 H14 H 0 1 N N N N N N 3.936  5.982 -17.824 -2.402 -0.307 1.194  H14 VMM 36 
VMM H15 H15 H 0 1 N N N N N N 9.666  1.390 -18.059 6.334  -0.294 0.790  H15 VMM 37 
VMM OX  OX  O 0 1 N N N N N N 6.025  7.538 -18.250 1.421  3.525  -0.118 OX  VMM 38 
VMM H5  H5  H 0 1 N N N N N N 2.190  5.858 -14.929 -6.145 1.452  0.454  H5  VMM 39 
VMM H16 H16 H 0 1 N N N N N N 6.236  8.392 -17.891 1.977  4.220  -0.496 H16 VMM 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VMM C08 C09 SING N N 1  
VMM C08 N07 SING N N 2  
VMM C09 N10 SING N N 3  
VMM C09 C16 SING N N 4  
VMM N10 O11 SING N N 5  
VMM O11 S12 SING N N 6  
VMM O15 S12 DOUB N N 7  
VMM O05 N04 SING N N 8  
VMM N07 C22 SING N N 9  
VMM N07 C06 SING N N 10 
VMM C16 C17 SING Y N 11 
VMM C16 C21 DOUB Y N 12 
VMM N04 C03 DOUB N Z 13 
VMM C22 O23 DOUB N N 14 
VMM C17 N18 DOUB Y N 15 
VMM C03 N02 SING N N 16 
VMM C03 C06 SING N N 17 
VMM S12 O13 DOUB N N 18 
VMM S12 O14 SING N N 19 
VMM N02 C01 SING N N 20 
VMM C06 C21 SING N N 21 
VMM C21 N19 SING Y N 22 
VMM N18 N19 SING Y N 23 
VMM N19 C20 SING N N 24 
VMM C17 H1  SING N N 25 
VMM C20 H2  SING N N 26 
VMM C20 H3  SING N N 27 
VMM C20 H4  SING N N 28 
VMM C01 H6  SING N N 29 
VMM C01 H7  SING N N 30 
VMM C01 H8  SING N N 31 
VMM C06 H9  SING N N 32 
VMM C08 H10 SING N N 33 
VMM C08 H11 SING N N 34 
VMM C09 H12 SING N N 35 
VMM N02 H13 SING N N 36 
VMM N10 H14 SING N N 37 
VMM O05 H15 SING N N 38 
VMM C22 OX  SING N N 39 
VMM O14 H5  SING N N 40 
VMM OX  H16 SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VMM SMILES           ACDLabs              12.01 "c12cnn(C)c1C(C(\NC)=N\O)N(C(=O)O)CC2NOS(=O)(O)=O"                                                                                                             
VMM InChI            InChI                1.03  "InChI=1S/C10H16N6O7S/c1-11-9(13-19)8-7-5(3-12-15(7)2)6(4-16(8)10(17)18)14-23-24(20,21)22/h3,6,8,14,19H,4H2,1-2H3,(H,11,13)(H,17,18)(H,20,21,22)/t6-,8-/m0/s1" 
VMM InChIKey         InChI                1.03  TVYRNFNEBLNAMJ-XPUUQOCRSA-N                                                                                                                                    
VMM SMILES_CANONICAL CACTVS               3.385 "CNC(=N/O)\[C@H]1N(C[C@H](NO[S](O)(=O)=O)c2cnn(C)c12)C(O)=O"                                                                                                   
VMM SMILES           CACTVS               3.385 "CNC(=NO)[CH]1N(C[CH](NO[S](O)(=O)=O)c2cnn(C)c12)C(O)=O"                                                                                                       
VMM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN/C(=N\O)/[C@@H]1c2c(cnn2C)[C@H](CN1C(=O)O)NOS(=O)(=O)O"                                                                                                     
VMM SMILES           "OpenEye OEToolkits" 2.0.7 "CNC(=NO)C1c2c(cnn2C)C(CN1C(=O)O)NOS(=O)(=O)O"                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VMM "SYSTEMATIC NAME" ACDLabs              12.01 
;(4R,7S)-7-(N'-hydroxy-N-methylcarbamimidoyl)-1-methyl-4-[(sulfooxy)amino]-1,4,5,7-tetrahydro-6H-pyrazolo[3,4-c]pyridine-6-carboxylic acid
;
VMM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 
;(4~{R},7~{S})-1-methyl-7-[(~{Z})-~{N}-methyl-~{N}'-oxidanyl-carbamimidoyl]-4-(sulfooxyamino)-5,7-dihydro-4~{H}-pyrazolo[3,4-c]pyridine-6-carboxylic acid
;
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      VMM 
_pdbx_chem_comp_synonyms.name         
;(4R,7S)-7-(N'-hydroxy-N-methylcarbamimidoyl)-1-methyl-4-[(sulfooxy)amino]-1,4,5,7-tetrahydro-6H-pyrazolo[3,4-c]pyridine-6-carboxylic acid
;
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VMM "Create component" 2020-08-27 RCSB 
VMM "Initial release"  2021-05-26 RCSB 
VMM "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            VMM 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C22 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
