data_WDM
#

_chem_comp.id                                   WDM
_chem_comp.name                                 "1,3-dimethyl-8-{[2-(morpholin-4-yl)-2-oxoethyl]sulfanyl}-6-sulfanylidene-1,3,6,7-tetrahydro-2H-purin-2-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H17 N5 O3 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-10-16
_chem_comp.pdbx_modified_date                   2021-03-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       355.436
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    WDM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7KG8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WDM  C11   C1   C  0  1  N  N  N  29.340  -0.149  -1.325   3.596  -0.975   0.242  C11   WDM   1  
WDM  C01   C2   C  0  1  N  N  N  24.355   6.428   0.081  -6.162   0.623  -0.125  C01   WDM   2  
WDM  C03   C3   C  0  1  N  N  N  23.491   4.241   0.933  -4.010   1.729   0.062  C03   WDM   3  
WDM  C05   C4   C  0  1  N  N  N  22.478   2.179   1.821  -1.948   3.012   0.251  C05   WDM   4  
WDM  C06   C5   C  0  1  Y  N  N  24.796   2.261   0.869  -1.958   0.548   0.079  C06   WDM   5  
WDM  C08   C6   C  0  1  Y  N  N  26.389   0.836   0.574  -0.498  -1.060   0.039  C08   WDM   6  
WDM  C10   C7   C  0  1  N  N  N  29.071  -0.367   0.159   2.172  -0.486   0.208  C10   WDM   7  
WDM  C13   C8   C  0  1  N  N  N  31.882   0.126  -1.121   4.350   1.352   0.441  C13   WDM   8  
WDM  C14   C9   C  0  1  N  N  N  33.136  -0.105  -2.062   5.227   2.066  -0.594  C14   WDM   9  
WDM  C16   C10  C  0  1  N  N  N  32.041  -0.472  -3.949   6.806   0.259  -0.645  C16   WDM  10  
WDM  C17   C11  C  0  1  N  N  N  30.836   0.268  -3.319   6.009  -0.548   0.388  C17   WDM  11  
WDM  C20   C12  C  0  1  Y  N  N  25.850   2.971   0.294  -2.664  -0.645  -0.038  C20   WDM  12  
WDM  C21   C13  C  0  1  N  N  N  25.742   4.363   0.004  -4.066  -0.608  -0.115  C21   WDM  13  
WDM  N02   N1   N  0  1  N  N  N  24.533   4.984   0.342  -4.700   0.581  -0.057  N02   WDM  14  
WDM  N04   N2   N  0  1  N  N  N  23.586   2.874   1.214  -2.665   1.740   0.127  N04   WDM  15  
WDM  N07   N3   N  0  1  Y  N  N  25.123   0.933   1.053  -0.659   0.245   0.122  N07   WDM  16  
WDM  N12   N4   N  0  1  N  N  N  30.598   0.038  -1.875   4.610  -0.094   0.352  N12   WDM  17  
WDM  N19   N5   N  0  1  Y  N  N  26.842   2.039   0.109  -1.716  -1.660  -0.062  N19   WDM  18  
WDM  O15   O1   O  0  1  N  N  N  32.857  -1.115  -2.962   6.585   1.654  -0.424  O15   WDM  19  
WDM  O18   O2   O  0  1  N  N  N  28.357  -0.153  -2.106   3.831  -2.164   0.176  O18   WDM  20  
WDM  O23   O3   O  0  1  N  N  N  22.421   4.824   1.230  -4.615   2.783   0.106  O23   WDM  21  
WDM  S09   S1   S  0  1  N  N  N  27.291  -0.652   0.578   1.051  -1.899   0.055  S09   WDM  22  
WDM  S22   S2   S  0  1  N  N  N  26.929   5.210  -0.663  -4.963  -2.059  -0.259  S22   WDM  23  
WDM  H013  H1   H  0  0  N  N  N  23.352   6.739   0.408  -6.551  -0.391  -0.219  H013  WDM  24  
WDM  H011  H2   H  0  0  N  N  N  25.115   6.997   0.636  -6.555   1.080   0.783  H011  WDM  25  
WDM  H012  H3   H  0  0  N  N  N  24.466   6.622  -0.996  -6.469   1.212  -0.990  H012  WDM  26  
WDM  H051  H4   H  0  0  N  N  N  21.651   2.884   1.991  -2.665   3.832   0.273  H051  WDM  27  
WDM  H052  H5   H  0  0  N  N  N  22.141   1.372   1.153  -1.366   3.013   1.172  H052  WDM  28  
WDM  H053  H6   H  0  0  N  N  N  22.797   1.750   2.782  -1.280   3.137  -0.601  H053  WDM  29  
WDM  H101  H7   H  0  0  N  N  N  29.647  -1.245   0.488   1.951   0.056   1.128  H101  WDM  30  
WDM  H102  H8   H  0  0  N  N  N  29.415   0.523   0.706   2.037   0.179  -0.646  H102  WDM  31  
WDM  H132  H9   H  0  0  N  N  N  31.884  -0.640  -0.331   4.597   1.709   1.441  H132  WDM  32  
WDM  H131  H10  H  0  0  N  N  N  31.959   1.124  -0.664   3.299   1.549   0.230  H131  WDM  33  
WDM  H142  H11  H  0  0  N  N  N  34.006  -0.388  -1.451   4.890   1.806  -1.598  H142  WDM  34  
WDM  H141  H12  H  0  0  N  N  N  33.359   0.823  -2.610   5.152   3.144  -0.453  H141  WDM  35  
WDM  H161  H13  H  0  0  N  N  N  31.663  -1.233  -4.647   7.868   0.037  -0.539  H161  WDM  36  
WDM  H162  H14  H  0  0  N  N  N  32.656   0.256  -4.498   6.476  -0.007  -1.649  H162  WDM  37  
WDM  H171  H15  H  0  0  N  N  N  30.994   1.347  -3.464   6.057  -1.609   0.142  H171  WDM  38  
WDM  H172  H16  H  0  0  N  N  N  29.931  -0.046  -3.861   6.423  -0.383   1.383  H172  WDM  39  
WDM  H191  H18  H  0  0  N  N  N  27.740   2.211  -0.296  -1.889  -2.611  -0.136  H191  WDM  40  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WDM  C16  C17   SING  N  N   1  
WDM  C16  O15   SING  N  N   2  
WDM  C17  N12   SING  N  N   3  
WDM  O15  C14   SING  N  N   4  
WDM  O18  C11   DOUB  N  N   5  
WDM  C14  C13   SING  N  N   6  
WDM  N12  C11   SING  N  N   7  
WDM  N12  C13   SING  N  N   8  
WDM  C11  C10   SING  N  N   9  
WDM  S22  C21   DOUB  N  N  10  
WDM  C21  C20   SING  N  N  11  
WDM  C21  N02   SING  N  N  12  
WDM  C01  N02   SING  N  N  13  
WDM  N19  C20   SING  Y  N  14  
WDM  N19  C08   SING  Y  N  15  
WDM  C10  S09   SING  N  N  16  
WDM  C20  C06   DOUB  Y  N  17  
WDM  N02  C03   SING  N  N  18  
WDM  C08  S09   SING  N  N  19  
WDM  C08  N07   DOUB  Y  N  20  
WDM  C06  N07   SING  Y  N  21  
WDM  C06  N04   SING  N  N  22  
WDM  C03  N04   SING  N  N  23  
WDM  C03  O23   DOUB  N  N  24  
WDM  N04  C05   SING  N  N  25  
WDM  C01  H013  SING  N  N  26  
WDM  C01  H011  SING  N  N  27  
WDM  C01  H012  SING  N  N  28  
WDM  C05  H051  SING  N  N  29  
WDM  C05  H052  SING  N  N  30  
WDM  C05  H053  SING  N  N  31  
WDM  C10  H101  SING  N  N  32  
WDM  C10  H102  SING  N  N  33  
WDM  C13  H132  SING  N  N  34  
WDM  C13  H131  SING  N  N  35  
WDM  C14  H142  SING  N  N  36  
WDM  C14  H141  SING  N  N  37  
WDM  C16  H161  SING  N  N  38  
WDM  C16  H162  SING  N  N  39  
WDM  C17  H171  SING  N  N  40  
WDM  C17  H172  SING  N  N  41  
WDM  N19  H191  SING  N  N  42  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WDM  SMILES            ACDLabs               12.01  "C(CSc2nc1N(C(=O)N(C)C(c1n2)=S)C)(N3CCOCC3)=O"  
WDM  InChI             InChI                 1.03   "InChI=1S/C13H17N5O3S2/c1-16-10-9(11(22)17(2)13(16)20)14-12(15-10)23-7-8(19)18-3-5-21-6-4-18/h3-7H2,1-2H3,(H,14,15)"  
WDM  InChIKey          InChI                 1.03   KRPVEFPMIUNCJW-UHFFFAOYSA-N  
WDM  SMILES_CANONICAL  CACTVS                3.385  "CN1C(=O)N(C)c2nc([nH]c2C1=S)SCC(=O)N3CCOCC3"  
WDM  SMILES            CACTVS                3.385  "CN1C(=O)N(C)c2nc([nH]c2C1=S)SCC(=O)N3CCOCC3"  
WDM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN1c2c([nH]c(n2)SCC(=O)N3CCOCC3)C(=S)N(C1=O)C"  
WDM  SMILES            "OpenEye OEToolkits"  2.0.7  "CN1c2c([nH]c(n2)SCC(=O)N3CCOCC3)C(=S)N(C1=O)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WDM  "SYSTEMATIC NAME"  ACDLabs               12.01  "1,3-dimethyl-8-{[2-(morpholin-4-yl)-2-oxoethyl]sulfanyl}-6-sulfanylidene-1,3,6,7-tetrahydro-2H-purin-2-one"  
WDM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "1,3-dimethyl-8-(2-morpholin-4-yl-2-oxidanylidene-ethyl)sulfanyl-6-sulfanylidene-7~{H}-purin-2-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WDM  "Create component"  2020-10-16  RCSB  
WDM  "Initial release"   2021-03-10  RCSB  
##
