data_WTM
#

_chem_comp.id                                   WTM
_chem_comp.name                                 "2-(2-fluorophenyl)-5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-1,6-dihydropyrimidine-4-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H17 F N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-11-10
_chem_comp.pdbx_modified_date                   2021-11-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       384.361
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    WTM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7KOP
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WTM  C17  C1   C  0  1  N  N  N   6.585  30.101  15.692   3.569  -0.112   0.079  C17  WTM   1  
WTM  C20  C2   C  0  1  Y  N  N   7.490  31.718  13.957   5.502   1.454   0.198  C20  WTM   2  
WTM  C21  C3   C  0  1  Y  N  N   8.521  32.242  13.142   6.014   2.735   0.211  C21  WTM   3  
WTM  C22  C4   C  0  1  Y  N  N   9.781  31.696  13.194   5.166   3.825   0.125  C22  WTM   4  
WTM  C24  C5   C  0  1  Y  N  N   9.005  30.106  14.862   3.271   2.362   0.012  C24  WTM   5  
WTM  C14  C6   C  0  1  N  N  N   5.715  29.052  17.831   3.944  -2.433   0.143  C14  WTM   6  
WTM  C11  C7   C  0  1  N  N  N   4.103  29.622  15.916   1.697  -1.480  -0.028  C11  WTM   7  
WTM  C23  C8   C  0  1  Y  N  N  10.040  30.633  14.045   3.799   3.639   0.026  C23  WTM   8  
WTM  C19  C9   C  0  1  Y  N  N   7.747  30.661  14.808   4.124   1.257   0.098  C19  WTM   9  
WTM  N16  N1   N  0  1  N  N  N   6.823  29.557  17.053   4.426  -1.171   0.159  N16  WTM  10  
WTM  N18  N2   N  0  1  N  N  N   5.230  30.127  15.141   2.271  -0.267  -0.010  N18  WTM  11  
WTM  C01  C10  C  0  1  N  N  N   5.605  34.543  12.004  -8.486   0.294   1.416  C01  WTM  12  
WTM  C03  C11  C  0  1  Y  N  N   4.212  32.768  11.606  -6.292   0.469   0.523  C03  WTM  13  
WTM  C04  C12  C  0  1  Y  N  N   3.125  31.943  11.937  -4.915   0.588   0.663  C04  WTM  14  
WTM  C05  C13  C  0  1  Y  N  N   2.861  30.782  11.190  -4.125   0.640  -0.471  C05  WTM  15  
WTM  C06  C14  C  0  1  N  N  N   1.659  29.809  11.504  -2.627   0.768  -0.362  C06  WTM  16  
WTM  C07  C15  C  0  1  N  N  N   1.367  29.586  12.968  -1.998  -0.626  -0.306  C07  WTM  17  
WTM  C09  C16  C  0  1  N  N  N   2.693  29.690  15.237   0.226  -1.606  -0.136  C09  WTM  18  
WTM  C12  C17  C  0  1  N  N  N   4.328  29.073  17.274   2.492  -2.615   0.038  C12  WTM  19  
WTM  C26  C18  C  0  1  Y  N  N   3.722  30.519  10.112  -4.743   0.571  -1.713  C26  WTM  20  
WTM  C27  C19  C  0  1  Y  N  N   4.804  31.398   9.823  -6.116   0.453  -1.777  C27  WTM  21  
WTM  F25  F1   F  0  1  N  N  N   9.252  29.081  15.684   1.935   2.182  -0.084  F25  WTM  22  
WTM  N08  N3   N  0  1  N  N  N   2.654  29.524  13.752  -0.543  -0.501  -0.200  N08  WTM  23  
WTM  N28  N4   N  0  1  Y  N  N   5.019  32.466  10.550  -6.844   0.400  -0.677  N28  WTM  24  
WTM  O02  O1   O  0  1  N  N  N   4.470  33.909  12.354  -7.078   0.417   1.627  O02  WTM  25  
WTM  O10  O2   O  0  1  N  N  N   1.728  29.867  15.854  -0.289  -2.707  -0.166  O10  WTM  26  
WTM  O13  O3   O  0  1  N  N  N   3.298  28.603  18.002   1.942  -3.855   0.022  O13  WTM  27  
WTM  O15  O4   O  0  1  N  N  N   5.904  28.630  18.886   4.693  -3.392   0.213  O15  WTM  28  
WTM  H1   H1   H  0  1  N  N  N   6.499  32.146  13.914   6.167   0.605   0.261  H1   WTM  29  
WTM  H2   H2   H  0  1  N  N  N   8.318  33.070  12.480   7.080   2.887   0.288  H2   WTM  30  
WTM  H3   H3   H  0  1  N  N  N  10.569  32.095  12.572   5.573   4.825   0.135  H3   WTM  31  
WTM  H4   H4   H  0  1  N  N  N  11.031  30.205  14.087   3.142   4.495  -0.040  H4   WTM  32  
WTM  H5   H5   H  0  1  N  N  N   7.749  29.540  17.431   5.381  -1.018   0.228  H5   WTM  33  
WTM  H6   H6   H  0  1  N  N  N   5.740  35.432  12.638  -8.843   1.150   0.843  H6   WTM  34  
WTM  H7   H7   H  0  1  N  N  N   6.460  33.864  12.138  -8.693  -0.624   0.867  H7   WTM  35  
WTM  H8   H8   H  0  1  N  N  N   5.543  34.851  10.950  -8.996   0.264   2.379  H8   WTM  36  
WTM  H9   H9   H  0  1  N  N  N   2.488  32.202  12.770  -4.468   0.640   1.645  H9   WTM  37  
WTM  H10  H10  H  0  1  N  N  N   0.754  30.227  11.038  -2.244   1.305  -1.230  H10  WTM  38  
WTM  H11  H11  H  0  1  N  N  N   1.887  28.833  11.052  -2.375   1.317   0.545  H11  WTM  39  
WTM  H12  H12  H  0  1  N  N  N   0.751  30.415  13.346  -2.381  -1.162   0.562  H12  WTM  40  
WTM  H13  H13  H  0  1  N  N  N   0.821  28.639  13.090  -2.251  -1.175  -1.213  H13  WTM  41  
WTM  H14  H14  H  0  1  N  N  N   3.562  29.645   9.499  -4.155   0.609  -2.618  H14  WTM  42  
WTM  H15  H15  H  0  1  N  N  N   5.458  31.181   8.991  -6.602   0.399  -2.740  H15  WTM  43  
WTM  H16  H16  H  0  1  N  N  N   3.511  29.366  13.261  -0.132   0.378  -0.176  H16  WTM  44  
WTM  H17  H17  H  0  1  N  N  N   3.618  28.295  18.842   2.588  -4.573   0.073  H17  WTM  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WTM  C27  C26  DOUB  Y  N   1  
WTM  C27  N28  SING  Y  N   2  
WTM  C26  C05  SING  Y  N   3  
WTM  N28  C03  DOUB  Y  N   4  
WTM  C05  C06  SING  N  N   5  
WTM  C05  C04  DOUB  Y  N   6  
WTM  C06  C07  SING  N  N   7  
WTM  C03  C04  SING  Y  N   8  
WTM  C03  O02  SING  N  N   9  
WTM  C01  O02  SING  N  N  10  
WTM  C07  N08  SING  N  N  11  
WTM  C21  C22  DOUB  Y  N  12  
WTM  C21  C20  SING  Y  N  13  
WTM  C22  C23  SING  Y  N  14  
WTM  N08  C09  SING  N  N  15  
WTM  C20  C19  DOUB  Y  N  16  
WTM  C23  C24  DOUB  Y  N  17  
WTM  C19  C24  SING  Y  N  18  
WTM  C19  C17  SING  N  N  19  
WTM  C24  F25  SING  N  N  20  
WTM  N18  C17  DOUB  N  N  21  
WTM  N18  C11  SING  N  N  22  
WTM  C09  O10  DOUB  N  N  23  
WTM  C09  C11  SING  N  N  24  
WTM  C17  N16  SING  N  N  25  
WTM  C11  C12  DOUB  N  N  26  
WTM  N16  C14  SING  N  N  27  
WTM  C12  C14  SING  N  N  28  
WTM  C12  O13  SING  N  N  29  
WTM  C14  O15  DOUB  N  N  30  
WTM  C20  H1   SING  N  N  31  
WTM  C21  H2   SING  N  N  32  
WTM  C22  H3   SING  N  N  33  
WTM  C23  H4   SING  N  N  34  
WTM  N16  H5   SING  N  N  35  
WTM  C01  H6   SING  N  N  36  
WTM  C01  H7   SING  N  N  37  
WTM  C01  H8   SING  N  N  38  
WTM  C04  H9   SING  N  N  39  
WTM  C06  H10  SING  N  N  40  
WTM  C06  H11  SING  N  N  41  
WTM  C07  H12  SING  N  N  42  
WTM  C07  H13  SING  N  N  43  
WTM  C26  H14  SING  N  N  44  
WTM  C27  H15  SING  N  N  45  
WTM  N08  H16  SING  N  N  46  
WTM  O13  H17  SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WTM  SMILES            ACDLabs               12.01  "C=1(NC(=O)C(=C(N=1)C(=O)NCCc2cc(OC)ncc2)O)c3ccccc3F"  
WTM  InChI             InChI                 1.03   "InChI=1S/C19H17FN4O4/c1-28-14-10-11(6-8-21-14)7-9-22-18(26)15-16(25)19(27)24-17(23-15)12-4-2-3-5-13(12)20/h2-6,8,10,25H,7,9H2,1H3,(H,22,26)(H,23,24,27)"  
WTM  InChIKey          InChI                 1.03   UVUDZFBAAXHOBN-UHFFFAOYSA-N  
WTM  SMILES_CANONICAL  CACTVS                3.385  "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)c3ccccc3F)ccn1"  
WTM  SMILES            CACTVS                3.385  "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)c3ccccc3F)ccn1"  
WTM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COc1cc(ccn1)CCNC(=O)C2=C(C(=O)NC(=N2)c3ccccc3F)O"  
WTM  SMILES            "OpenEye OEToolkits"  2.0.7  "COc1cc(ccn1)CCNC(=O)C2=C(C(=O)NC(=N2)c3ccccc3F)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WTM  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-(2-fluorophenyl)-5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-1,6-dihydropyrimidine-4-carboxamide"  
WTM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2-(2-fluorophenyl)-~{N}-[2-(2-methoxypyridin-4-yl)ethyl]-5-oxidanyl-6-oxidanylidene-1~{H}-pyrimidine-4-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WTM  "Create component"  2020-11-10  RCSB  
WTM  "Initial release"   2021-11-10  RCSB  
##
