data_XMM
#

_chem_comp.id                                   XMM
_chem_comp.name                                 "5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C14 H15 Br Cl N O6"
_chem_comp.mon_nstd_parent_comp_id              MAN
_chem_comp.pdbx_synonyms                        
;(2R,3S,4S,5S,6R)-2-(5-BROMO-4-CHLORO-1H-INDOL-3-YLOXY)-TETRAHYDRO-6-(HYDROXYMETHYL)-2H-PYRAN-3,4,5-TRIOL;
(5-BROMO-4-CHLORO-3-INDOLYL)-Alpha-D-MANNOSE; 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannoside;
5-bromo-4-chloro-1H-indol-3-yl D-mannoside; 5-bromo-4-chloro-1H-indol-3-yl mannoside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2005-04-26
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       408.629
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XMM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1ZGS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  XMM  "(2R,3S,4S,5S,6R)-2-(5-BROMO-4-CHLORO-1H-INDOL-3-YLOXY)-TETRAHYDRO-6-(HYDROXYMETHYL)-2H-PYRAN-3,4,5-TRIOL"  PDB  ?  
2  XMM  "(5-BROMO-4-CHLORO-3-INDOLYL)-Alpha-D-MANNOSE"                                                              PDB  ?  
3  XMM  "5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannoside"                                                          PDB  ?  
4  XMM  "5-bromo-4-chloro-1H-indol-3-yl D-mannoside"                                                                PDB  ?  
5  XMM  "5-bromo-4-chloro-1H-indol-3-yl mannoside"                                                                  PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XMM  O2   O2   O   0  1  N  N  N   5.353  -2.919  17.109  -4.751   0.091  -1.827  O2   XMM   1  
XMM  C2   C2   C   0  1  N  N  S   3.937  -3.010  17.237  -3.445   0.613  -1.572  C2   XMM   2  
XMM  C3   C3   C   0  1  N  N  S   3.706  -3.955  18.402  -3.510   1.628  -0.426  C3   XMM   3  
XMM  O3   O3   O   0  1  N  N  N   4.298  -5.239  18.146  -4.494   2.621  -0.720  O3   XMM   4  
XMM  C4   C4   C   0  1  N  N  S   4.395  -3.339  19.604  -3.891   0.887   0.862  C4   XMM   5  
XMM  O4   O4   O   0  1  N  N  N   4.160  -4.074  20.790  -3.814   1.786   1.970  O4   XMM   6  
XMM  C5   C5   C   0  1  N  N  R   3.951  -1.921  19.891  -2.918  -0.274   1.076  C5   XMM   7  
XMM  O5   O5   O   0  1  N  N  N   3.849  -1.086  18.736  -3.011  -1.188  -0.015  O5   XMM   8  
XMM  C6   C6   C   0  1  N  N  N   5.158  -1.447  20.655  -3.268  -0.998   2.377  C6   XMM   9  
XMM  O6   O6   O   0  1  N  N  N   5.007  -0.087  20.946  -2.289  -2.006   2.640  O6   XMM  10  
XMM  C1   C1   C   0  1  N  N  R   3.309  -1.634  17.519  -2.506  -0.529  -1.175  C1   XMM  11  
XMM  O1   O1   O   0  1  N  N  N   1.921  -1.930  17.652  -1.209   0.001  -0.894  O1   XMM  12  
XMM  C7   C7   C   0  1  Y  N  N   0.752  -1.207  17.693  -0.367  -1.063  -0.776  C7   XMM  13  
XMM  C8   C8   C   0  1  Y  N  N  -0.522  -1.556  18.467   1.072  -1.010  -0.494  C8   XMM  14  
XMM  C9   C9   C   0  1  Y  N  N  -1.452  -0.452  18.101   1.514  -2.345  -0.462  C9   XMM  15  
XMM  N1   N1   N   0  1  Y  N  N  -0.859   0.475  17.193   0.421  -3.143  -0.716  N1   XMM  16  
XMM  C11  C11  C   0  1  Y  N  N   0.270  -0.143  17.133  -0.695  -2.361  -0.901  C11  XMM  17  
XMM  C10  C10  C   0  1  Y  N  N  -0.881  -2.642  19.352   1.976   0.030  -0.262  C10  XMM  18  
XMM  CL   CL   CL  0  1  N  N  N   0.128  -3.697  19.640   1.436   1.679  -0.294  CL   XMM  19  
XMM  C13  C13  C   0  1  Y  N  N  -2.313  -2.634  19.931   3.300  -0.261  -0.013  C13  XMM  20  
XMM  BR   BR   BR  0  1  N  N  N  -3.006  -3.511  20.858   4.529   1.142   0.295  BR   XMM  21  
XMM  C14  C14  C   0  1  Y  N  N  -2.801  -1.575  19.425   3.736  -1.580   0.013  C14  XMM  22  
XMM  C12  C12  C   0  1  Y  N  N  -2.753  -0.506  18.683   2.855  -2.615  -0.209  C12  XMM  23  
XMM  HO2  HO2  H   0  1  N  Y  N   5.497  -2.327  16.379  -4.662  -0.546  -2.549  HO2  XMM  24  
XMM  H2   H2   H   0  1  N  N  N   3.463  -3.376  16.296  -3.066   1.101  -2.470  H2   XMM  25  
XMM  H3   H3   H   0  1  N  N  N   2.612  -4.100  18.566  -2.537   2.102  -0.302  H3   XMM  26  
XMM  HO3  HO3  H   0  1  N  Y  N   4.153  -5.830  18.875  -4.221   3.051  -1.542  HO3  XMM  27  
XMM  H4   H4   H   0  1  N  N  N   5.474  -3.352  19.326  -4.907   0.502   0.774  H4   XMM  28  
XMM  HO4  HO4  H   0  1  N  Y  N   4.591  -3.688  21.543  -4.436   2.504   1.791  HO4  XMM  29  
XMM  H5   H5   H   0  1  N  N  N   2.945  -1.884  20.372  -1.900   0.113   1.138  H5   XMM  30  
XMM  H61  H61  H   0  1  N  N  N   5.349  -2.057  21.567  -4.250  -1.461   2.283  H61  XMM  31  
XMM  H62  H62  H   0  1  N  N  N   6.111  -1.663  20.119  -3.281  -0.282   3.199  H62  XMM  32  
XMM  HO6  HO6  H   0  1  N  Y  N   5.768   0.212  21.428  -2.547  -2.437   3.466  HO6  XMM  33  
XMM  H1   H1   H   0  1  N  N  N   3.509  -0.876  16.725  -2.436  -1.243  -1.996  H1   XMM  34  
XMM  HN1  HN1  H   0  1  N  N  N  -1.155   1.330  16.723   0.436  -4.112  -0.758  HN1  XMM  35  
XMM  H11  H11  H   0  1  N  N  N   0.983   0.348  16.449  -1.686  -2.733  -1.114  H11  XMM  36  
XMM  H14  H14  H   0  1  N  N  N  -3.810  -1.593  19.869   4.776  -1.795   0.209  H14  XMM  37  
XMM  H12  H12  H   0  1  N  N  N  -3.605   0.184  18.574   3.206  -3.637  -0.186  H12  XMM  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XMM  O2   C2   SING  N  N   1  
XMM  O2   HO2  SING  N  N   2  
XMM  C2   C3   SING  N  N   3  
XMM  C2   C1   SING  N  N   4  
XMM  C2   H2   SING  N  N   5  
XMM  C3   O3   SING  N  N   6  
XMM  C3   C4   SING  N  N   7  
XMM  C3   H3   SING  N  N   8  
XMM  O3   HO3  SING  N  N   9  
XMM  C4   O4   SING  N  N  10  
XMM  C4   C5   SING  N  N  11  
XMM  C4   H4   SING  N  N  12  
XMM  O4   HO4  SING  N  N  13  
XMM  C5   O5   SING  N  N  14  
XMM  C5   C6   SING  N  N  15  
XMM  C5   H5   SING  N  N  16  
XMM  O5   C1   SING  N  N  17  
XMM  C6   O6   SING  N  N  18  
XMM  C6   H61  SING  N  N  19  
XMM  C6   H62  SING  N  N  20  
XMM  O6   HO6  SING  N  N  21  
XMM  C1   O1   SING  N  N  22  
XMM  C1   H1   SING  N  N  23  
XMM  O1   C7   SING  N  N  24  
XMM  C7   C8   SING  Y  N  25  
XMM  C7   C11  DOUB  Y  N  26  
XMM  C8   C9   DOUB  Y  N  27  
XMM  C8   C10  SING  Y  N  28  
XMM  C9   N1   SING  Y  N  29  
XMM  C9   C12  SING  Y  N  30  
XMM  N1   C11  SING  Y  N  31  
XMM  N1   HN1  SING  N  N  32  
XMM  C11  H11  SING  N  N  33  
XMM  C10  CL   SING  N  N  34  
XMM  C10  C13  DOUB  Y  N  35  
XMM  C13  BR   SING  N  N  36  
XMM  C13  C14  SING  Y  N  37  
XMM  C14  C12  DOUB  Y  N  38  
XMM  C14  H14  SING  N  N  39  
XMM  C12  H12  SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XMM  SMILES            ACDLabs               10.04  "Brc3ccc2c(c(OC1OC(C(O)C(O)C1O)CO)cn2)c3Cl"  
XMM  SMILES_CANONICAL  CACTVS                3.341  "OC[C@H]1O[C@H](Oc2c[nH]c3ccc(Br)c(Cl)c23)[C@@H](O)[C@@H](O)[C@@H]1O"  
XMM  SMILES            CACTVS                3.341  "OC[CH]1O[CH](Oc2c[nH]c3ccc(Br)c(Cl)c23)[CH](O)[CH](O)[CH]1O"  
XMM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1cc(c(c2c1[nH]cc2O[C@@H]3[C@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)Cl)Br"  
XMM  SMILES            "OpenEye OEToolkits"  1.5.0  "c1cc(c(c2c1[nH]cc2OC3C(C(C(C(O3)CO)O)O)O)Cl)Br"  
XMM  InChI             InChI                 1.03   "InChI=1S/C14H15BrClNO6/c15-5-1-2-6-9(10(5)16)7(3-17-6)22-14-13(21)12(20)11(19)8(4-18)23-14/h1-3,8,11-14,17-21H,4H2/t8-,11-,12+,13+,14+/m1/s1"  
XMM  InChIKey          InChI                 1.03   OPIFSICVWOWJMJ-HAAGFXOZSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XMM  "SYSTEMATIC NAME"  ACDLabs               10.04  "5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside"  
XMM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R,3S,4S,5S,6R)-2-[(5-bromo-4-chloro-1H-indol-3-yl)oxy]-6-(hydroxymethyl)oxane-3,4,5-triol"  
#
_pdbx_chem_comp_related.comp_id            XMM
_pdbx_chem_comp_related.related_comp_id    MAN
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  XMM  C1   MAN  C1   "Carbohydrate core"  
 2  XMM  C2   MAN  C2   "Carbohydrate core"  
 3  XMM  C3   MAN  C3   "Carbohydrate core"  
 4  XMM  C4   MAN  C4   "Carbohydrate core"  
 5  XMM  C5   MAN  C5   "Carbohydrate core"  
 6  XMM  C6   MAN  C6   "Carbohydrate core"  
 7  XMM  O1   MAN  O1   "Carbohydrate core"  
 8  XMM  O2   MAN  O2   "Carbohydrate core"  
 9  XMM  O3   MAN  O3   "Carbohydrate core"  
10  XMM  O4   MAN  O4   "Carbohydrate core"  
11  XMM  O5   MAN  O5   "Carbohydrate core"  
12  XMM  O6   MAN  O6   "Carbohydrate core"  
13  XMM  H1   MAN  H1   "Carbohydrate core"  
14  XMM  H2   MAN  H2   "Carbohydrate core"  
15  XMM  H3   MAN  H3   "Carbohydrate core"  
16  XMM  H4   MAN  H4   "Carbohydrate core"  
17  XMM  H5   MAN  H5   "Carbohydrate core"  
18  XMM  H61  MAN  H61  "Carbohydrate core"  
19  XMM  H62  MAN  H62  "Carbohydrate core"  
20  XMM  HO2  MAN  HO2  "Carbohydrate core"  
21  XMM  HO3  MAN  HO3  "Carbohydrate core"  
22  XMM  HO4  MAN  HO4  "Carbohydrate core"  
23  XMM  HO6  MAN  HO6  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
XMM  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
XMM  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
XMM  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
XMM  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XMM  "Create component"          2005-04-26  RCSB  
XMM  "Modify descriptor"         2011-06-04  RCSB  
XMM  "Other modification"        2020-07-03  RCSB  
XMM  "Modify parent residue"     2020-07-17  RCSB  
XMM  "Modify name"               2020-07-17  RCSB  
XMM  "Modify synonyms"           2020-07-17  RCSB  
XMM  "Modify linking type"       2020-07-17  RCSB  
XMM  "Modify leaving atom flag"  2020-07-17  RCSB  
##
