data_YPM
#

_chem_comp.id                                   YPM
_chem_comp.name                                 "(1s,3R,5S,7s)-N-[(1r,4r)-4-aminocyclohexyl]-3,5-diphenyladamantane-1-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C29 H36 N2 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-19
_chem_comp.pdbx_modified_date                   2021-11-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       428.609
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YPM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LYY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YPM  C10  C1   C  0  1  N  N  N  -41.995  17.695   -7.879   4.794   1.059   0.405  C10  YPM   1  
YPM  C11  C2   C  0  1  N  N  N  -45.107  14.258   -7.356   0.200  -0.383  -0.355  C11  YPM   2  
YPM  C02  C3   C  0  1  N  N  N  -44.717  15.712   -7.592   1.572  -0.696   0.184  C02  YPM   3  
YPM  C04  C4   C  0  1  N  N  N  -43.273  17.614   -7.032   3.954  -0.219   0.378  C04  YPM   4  
YPM  C05  C5   C  0  1  N  N  N  -43.053  18.366   -5.708   4.631  -1.256  -0.521  C05  YPM   5  
YPM  C06  C6   C  0  1  N  N  N  -42.767  19.851   -5.976   6.024  -1.573   0.027  C06  YPM   6  
YPM  C07  C7   C  0  1  N  N  N  -41.591  20.070   -6.953   6.864  -0.295   0.054  C07  YPM   7  
YPM  C09  C8   C  0  1  N  N  N  -41.674  19.167   -8.209   6.187   0.742   0.952  C09  YPM   8  
YPM  C12  C9   C  0  1  N  N  N  -45.997  13.806   -8.533  -0.222   1.014   0.102  C12  YPM   9  
YPM  C13  C10  C  0  1  N  N  R  -46.406  12.324   -8.383  -1.615   1.332  -0.445  C13  YPM  10  
YPM  C14  C11  C  0  1  N  N  N  -45.115  11.480   -8.310  -1.585   1.283  -1.974  C14  YPM  11  
YPM  C15  C12  C  0  1  Y  N  N  -47.286  11.882   -9.560  -2.030   2.708   0.005  C15  YPM  12  
YPM  C16  C13  C  0  1  Y  N  N  -48.556  11.345   -9.318  -1.273   3.809  -0.350  C16  YPM  13  
YPM  C17  C14  C  0  1  Y  N  N  -49.371  10.925  -10.359  -1.654   5.072   0.064  C17  YPM  14  
YPM  C18  C15  C  0  1  Y  N  N  -48.940  11.042  -11.677  -2.792   5.234   0.833  C18  YPM  15  
YPM  C19  C16  C  0  1  Y  N  N  -47.683  11.570  -11.938  -3.549   4.133   1.187  C19  YPM  16  
YPM  C20  C17  C  0  1  Y  N  N  -46.869  11.981  -10.888  -3.171   2.871   0.769  C20  YPM  17  
YPM  C21  C18  C  0  1  N  N  N  -47.173  12.169   -7.051  -2.616   0.300   0.079  C21  YPM  18  
YPM  C22  C19  C  0  1  N  N  S  -46.290  12.595   -5.848  -2.194  -1.098  -0.379  C22  YPM  19  
YPM  C23  C20  C  0  1  N  N  N  -44.994  11.752   -5.820  -2.164  -1.147  -1.908  C23  YPM  20  
YPM  C24  C21  C  0  1  N  N  N  -44.223  11.933   -7.133  -1.163  -0.115  -2.432  C24  YPM  21  
YPM  C25  C22  C  0  1  N  N  N  -43.825  13.408   -7.305   0.229  -0.432  -1.884  C25  YPM  22  
YPM  C26  C23  C  0  1  Y  N  N  -47.055  12.282   -4.553  -3.180  -2.114   0.137  C26  YPM  23  
YPM  C27  C24  C  0  1  Y  N  N  -48.373  11.827   -4.619  -4.262  -1.705   0.894  C27  YPM  24  
YPM  C28  C25  C  0  1  Y  N  N  -49.091  11.527   -3.472  -5.167  -2.637   1.367  C28  YPM  25  
YPM  C29  C26  C  0  1  Y  N  N  -48.505  11.665   -2.221  -4.989  -3.978   1.084  C29  YPM  26  
YPM  C30  C27  C  0  1  Y  N  N  -47.195  12.103   -2.135  -3.907  -4.387   0.326  C30  YPM  27  
YPM  C31  C28  C  0  1  Y  N  N  -46.479  12.406   -3.290  -3.005  -3.455  -0.150  C31  YPM  28  
YPM  C32  C29  C  0  1  N  N  N  -45.887  14.081   -6.037  -0.801  -1.415   0.169  C32  YPM  29  
YPM  N03  N1   N  0  1  N  N  N  -43.703  16.212   -6.846   2.620   0.085  -0.146  N03  YPM  30  
YPM  N08  N2   N  0  1  N  N  N  -41.584  21.486   -7.386   8.202  -0.599   0.580  N08  YPM  31  
YPM  O01  O1   O  0  1  N  N  N  -45.283  16.392   -8.438   1.733  -1.650   0.915  O01  YPM  32  
YPM  H1   H1   H  0  1  N  N  N  -42.142  17.135   -8.815   4.883   1.457  -0.606  H1   YPM  33  
YPM  H2   H2   H  0  1  N  N  N  -41.157  17.256   -7.317   4.312   1.798   1.045  H2   YPM  34  
YPM  H3   H3   H  0  1  N  N  N  -44.065  18.143   -7.582   3.865  -0.617   1.389  H3   YPM  35  
YPM  H4   H4   H  0  1  N  N  N  -43.956  18.277   -5.087   4.032  -2.166  -0.540  H4   YPM  36  
YPM  H5   H5   H  0  1  N  N  N  -42.198  17.922   -5.177   4.720  -0.858  -1.531  H5   YPM  37  
YPM  H6   H6   H  0  1  N  N  N  -42.525  20.340   -5.021   5.935  -1.971   1.038  H6   YPM  38  
YPM  H7   H7   H  0  1  N  N  N  -43.670  20.310   -6.405   6.506  -2.312  -0.613  H7   YPM  39  
YPM  H8   H8   H  0  1  N  N  N  -40.652  19.846   -6.425   6.953   0.103  -0.957  H8   YPM  40  
YPM  H9   H9   H  0  1  N  N  N  -40.707  19.205   -8.732   6.786   1.653   0.971  H9   YPM  41  
YPM  H10  H10  H  0  1  N  N  N  -42.463  19.557   -8.869   6.098   0.344   1.963  H10  YPM  42  
YPM  H11  H11  H  0  1  N  N  N  -45.440  13.932   -9.473  -0.243   1.049   1.191  H11  YPM  43  
YPM  H12  H12  H  0  1  N  N  N  -46.904  14.428   -8.558   0.491   1.749  -0.271  H12  YPM  44  
YPM  H13  H13  H  0  1  N  N  N  -45.384  10.422   -8.171  -2.578   1.508  -2.364  H13  YPM  45  
YPM  H14  H14  H  0  1  N  N  N  -44.556  11.596   -9.250  -0.872   2.018  -2.348  H14  YPM  46  
YPM  H15  H15  H  0  1  N  N  N  -48.908  11.256   -8.301  -0.384   3.683  -0.950  H15  YPM  47  
YPM  H16  H16  H  0  1  N  N  N  -50.343  10.506  -10.146  -1.062   5.932  -0.213  H16  YPM  48  
YPM  H17  H17  H  0  1  N  N  N  -49.577  10.725  -12.489  -3.089   6.221   1.156  H17  YPM  49  
YPM  H18  H18  H  0  1  N  N  N  -47.337  11.662  -12.957  -4.437   4.260   1.788  H18  YPM  50  
YPM  H19  H19  H  0  1  N  N  N  -45.892  12.386  -11.105  -3.763   2.011   1.046  H19  YPM  51  
YPM  H20  H20  H  0  1  N  N  N  -48.073  12.801   -7.078  -2.637   0.335   1.168  H20  YPM  52  
YPM  H21  H21  H  0  1  N  N  N  -47.468  11.117   -6.926  -3.608   0.526  -0.311  H21  YPM  53  
YPM  H22  H22  H  0  1  N  N  N  -45.252  10.690   -5.693  -1.864  -2.143  -2.234  H22  YPM  54  
YPM  H23  H23  H  0  1  N  N  N  -44.364  12.079   -4.980  -3.157  -0.921  -2.298  H23  YPM  55  
YPM  H24  H24  H  0  1  N  N  N  -43.315  11.313   -7.109  -1.142  -0.150  -3.521  H24  YPM  56  
YPM  H25  H25  H  0  1  N  N  N  -43.260  13.533   -8.240   0.943   0.303  -2.257  H25  YPM  57  
YPM  H26  H26  H  0  1  N  N  N  -43.203  13.726   -6.455   0.530  -1.428  -2.210  H26  YPM  58  
YPM  H27  H27  H  0  1  N  N  N  -48.843  11.706   -5.584  -4.401  -0.657   1.115  H27  YPM  59  
YPM  H28  H28  H  0  1  N  N  N  -50.112  11.184   -3.552  -6.012  -2.317   1.959  H28  YPM  60  
YPM  H29  H29  H  0  1  N  N  N  -49.064  11.434   -1.327  -5.695  -4.707   1.454  H29  YPM  61  
YPM  H30  H30  H  0  1  N  N  N  -46.726  12.210   -1.168  -3.769  -5.435   0.105  H30  YPM  62  
YPM  H31  H31  H  0  1  N  N  N  -45.457  12.744   -3.205  -2.162  -3.774  -0.745  H31  YPM  63  
YPM  H32  H32  H  0  1  N  N  N  -45.253  14.395   -5.195  -0.501  -2.411  -0.157  H32  YPM  64  
YPM  H33  H33  H  0  1  N  N  N  -46.794  14.703   -6.065  -0.822  -1.380   1.258  H33  YPM  65  
YPM  H34  H34  H  0  1  N  N  N  -43.246  15.634   -6.170   2.491   0.848  -0.731  H34  YPM  66  
YPM  H35  H35  H  0  1  N  N  N  -41.531  22.080   -6.583   8.777   0.229   0.607  H35  YPM  67  
YPM  H36  H36  H  0  1  N  N  N  -40.793  21.650   -7.975   8.143  -1.029   1.490  H36  YPM  68  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YPM  C19  C18  DOUB  Y  N   1  
YPM  C19  C20  SING  Y  N   2  
YPM  C18  C17  SING  Y  N   3  
YPM  C20  C15  DOUB  Y  N   4  
YPM  C17  C16  DOUB  Y  N   5  
YPM  C15  C16  SING  Y  N   6  
YPM  C15  C13  SING  N  N   7  
YPM  C12  C13  SING  N  N   8  
YPM  C12  C11  SING  N  N   9  
YPM  O01  C02  DOUB  N  N  10  
YPM  C13  C14  SING  N  N  11  
YPM  C13  C21  SING  N  N  12  
YPM  C14  C24  SING  N  N  13  
YPM  C09  C10  SING  N  N  14  
YPM  C09  C07  SING  N  N  15  
YPM  C10  C04  SING  N  N  16  
YPM  C02  C11  SING  N  N  17  
YPM  C02  N03  SING  N  N  18  
YPM  N08  C07  SING  N  N  19  
YPM  C11  C25  SING  N  N  20  
YPM  C11  C32  SING  N  N  21  
YPM  C25  C24  SING  N  N  22  
YPM  C24  C23  SING  N  N  23  
YPM  C21  C22  SING  N  N  24  
YPM  C04  N03  SING  N  N  25  
YPM  C04  C05  SING  N  N  26  
YPM  C07  C06  SING  N  N  27  
YPM  C32  C22  SING  N  N  28  
YPM  C06  C05  SING  N  N  29  
YPM  C22  C23  SING  N  N  30  
YPM  C22  C26  SING  N  N  31  
YPM  C27  C26  DOUB  Y  N  32  
YPM  C27  C28  SING  Y  N  33  
YPM  C26  C31  SING  Y  N  34  
YPM  C28  C29  DOUB  Y  N  35  
YPM  C31  C30  DOUB  Y  N  36  
YPM  C29  C30  SING  Y  N  37  
YPM  C10  H1   SING  N  N  38  
YPM  C10  H2   SING  N  N  39  
YPM  C04  H3   SING  N  N  40  
YPM  C05  H4   SING  N  N  41  
YPM  C05  H5   SING  N  N  42  
YPM  C06  H6   SING  N  N  43  
YPM  C06  H7   SING  N  N  44  
YPM  C07  H8   SING  N  N  45  
YPM  C09  H9   SING  N  N  46  
YPM  C09  H10  SING  N  N  47  
YPM  C12  H11  SING  N  N  48  
YPM  C12  H12  SING  N  N  49  
YPM  C14  H13  SING  N  N  50  
YPM  C14  H14  SING  N  N  51  
YPM  C16  H15  SING  N  N  52  
YPM  C17  H16  SING  N  N  53  
YPM  C18  H17  SING  N  N  54  
YPM  C19  H18  SING  N  N  55  
YPM  C20  H19  SING  N  N  56  
YPM  C21  H20  SING  N  N  57  
YPM  C21  H21  SING  N  N  58  
YPM  C23  H22  SING  N  N  59  
YPM  C23  H23  SING  N  N  60  
YPM  C24  H24  SING  N  N  61  
YPM  C25  H25  SING  N  N  62  
YPM  C25  H26  SING  N  N  63  
YPM  C27  H27  SING  N  N  64  
YPM  C28  H28  SING  N  N  65  
YPM  C29  H29  SING  N  N  66  
YPM  C30  H30  SING  N  N  67  
YPM  C31  H31  SING  N  N  68  
YPM  C32  H32  SING  N  N  69  
YPM  C32  H33  SING  N  N  70  
YPM  N03  H34  SING  N  N  71  
YPM  N08  H35  SING  N  N  72  
YPM  N08  H36  SING  N  N  73  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YPM  SMILES            ACDLabs               12.01  "O=C(NC1CCC(N)CC1)C12CC3CC(CC(C3)(C1)c1ccccc1)(C2)c1ccccc1"  
YPM  InChI             InChI                 1.03   "InChI=1S/C29H36N2O/c30-24-11-13-25(14-12-24)31-26(32)29-17-21-15-27(19-29,22-7-3-1-4-8-22)18-28(16-21,20-29)23-9-5-2-6-10-23/h1-10,21,24-25H,11-20,30H2,(H,31,32)/t21-,24-,25-,27-,28+,29-"  
YPM  InChIKey          InChI                 1.03   NVUHXOGQIOZZGY-AVGVDBRCSA-N  
YPM  SMILES_CANONICAL  CACTVS                3.385  "N[C@H]1CC[C@@H](CC1)NC(=O)C23CC4C[C@](C2)(C[C@@](C4)(C3)c5ccccc5)c6ccccc6"  
YPM  SMILES            CACTVS                3.385  "N[CH]1CC[CH](CC1)NC(=O)C23CC4C[C](C2)(C[C](C4)(C3)c5ccccc5)c6ccccc6"  
YPM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)[C@]23CC4C[C@](C2)(CC(C4)(C3)C(=O)NC5CCC(CC5)N)c6ccccc6"  
YPM  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)C23CC4CC(C2)(CC(C4)(C3)C(=O)NC5CCC(CC5)N)c6ccccc6"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YPM  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1s,3R,5S,7s)-N-[(1r,4r)-4-aminocyclohexyl]-3,5-diphenyladamantane-1-carboxamide"  
YPM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(3~{S},5~{R})-~{N}-(4-azanylcyclohexyl)-3,5-diphenyl-adamantane-1-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YPM  "Create component"  2021-03-19  RCSB  
YPM  "Initial release"   2021-11-24  RCSB  
##
