data_YXM
#

_chem_comp.id                                   YXM
_chem_comp.name                                 "N-[(1R,2R)-1,3-dihydroxy-1-(4-nitrophenyl)propan-2-yl]-5-(triphenyl-lambda~5~-phosphanyl)pentanamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C32 H35 N2 O5 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-04-05
_chem_comp.pdbx_modified_date                   2021-04-16
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       558.604
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YXM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7MD7
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YXM  CAA  C1   C   0  1  Y  N  N  84.715  -56.626   -3.418  -6.195  -0.236  -1.291  CAA  YXM   1  
YXM  CAB  C2   C   0  1  Y  N  N  85.313  -57.235   -4.516  -5.632   0.582  -0.330  CAB  YXM   2  
YXM  CAC  C3   C   0  1  Y  N  N  86.252  -56.531   -5.264  -5.105   0.032   0.823  CAC  YXM   3  
YXM  CAD  C4   C   0  1  Y  N  N  86.583  -55.224   -4.931  -5.142  -1.336   1.016  CAD  YXM   4  
YXM  CAE  C5   C   0  1  Y  N  N  85.974  -54.613   -3.841  -5.707  -2.154   0.056  CAE  YXM   5  
YXM  CAF  C6   C   0  1  Y  N  N  85.041  -55.315   -3.082  -6.232  -1.604  -1.098  CAF  YXM   6  
YXM  CAH  C7   C   0  1  N  N  R  85.026  -58.563   -4.862  -5.591   2.074  -0.540  CAH  YXM   7  
YXM  CAJ  C8   C   0  1  N  N  R  83.951  -58.708   -5.937  -4.241   2.467  -1.144  CAJ  YXM   8  
YXM  CAM  C9   C   0  1  N  N  N  84.005  -60.166   -6.390  -4.151   3.992  -1.242  CAM  YXM   9  
YXM  CAP  C10  C   0  1  N  N  N  81.783  -57.525   -5.971  -1.941   1.733  -0.815  CAP  YXM  10  
YXM  CAR  C11  C   0  1  N  N  N  80.402  -57.439   -5.312  -0.830   1.220   0.063  CAR  YXM  11  
YXM  CAS  C12  C   0  1  N  N  N  79.720  -56.071   -5.423   0.439   1.039  -0.773  CAS  YXM  12  
YXM  CAT  C13  C   0  1  N  N  N  78.257  -56.276   -5.007   1.568   0.518   0.119  CAT  YXM  13  
YXM  CAU  C14  C   0  1  N  N  N  77.515  -54.960   -4.732   2.836   0.338  -0.718  CAU  YXM  14  
YXM  CAW  C15  C   0  1  Y  N  N  75.110  -53.875   -4.152   3.237  -2.075   0.288  CAW  YXM  15  
YXM  CAX  C16  C   0  1  Y  N  N  75.308  -56.712   -4.638   3.829   0.783   1.693  CAX  YXM  16  
YXM  CAY  C17  C   0  1  Y  N  N  75.769  -54.823   -6.779   5.436  -0.068  -0.988  CAY  YXM  17  
YXM  CAZ  C18  C   0  1  Y  N  N  75.905  -52.784   -3.817   2.362  -2.398   1.309  CAZ  YXM  18  
YXM  CBA  C19  C   0  1  Y  N  N  75.382  -51.759   -3.036   1.671  -3.594   1.275  CBA  YXM  19  
YXM  CBB  C20  C   0  1  Y  N  N  74.065  -51.826   -2.592   1.853  -4.468   0.219  CBB  YXM  20  
YXM  CBC  C21  C   0  1  Y  N  N  73.271  -52.917   -2.925   2.727  -4.145  -0.802  CBC  YXM  21  
YXM  CBD  C22  C   0  1  Y  N  N  73.796  -53.939   -3.707   3.419  -2.949  -0.767  CBD  YXM  22  
YXM  CBE  C23  C   0  1  Y  N  N  76.829  -54.106   -7.328   6.756  -0.432  -0.804  CBE  YXM  23  
YXM  CBF  C24  C   0  1  Y  N  N  76.852  -53.837   -8.690   7.694  -0.147  -1.778  CBF  YXM  24  
YXM  CBG  C25  C   0  1  Y  N  N  75.821  -54.282   -9.509   7.311   0.502  -2.937  CBG  YXM  25  
YXM  CBH  C26  C   0  1  Y  N  N  74.763  -54.999   -8.965   5.990   0.866  -3.121  CBH  YXM  26  
YXM  CBI  C27  C   0  1  Y  N  N  74.737  -55.266   -7.602   5.051   0.576  -2.149  CBI  YXM  27  
YXM  CBJ  C28  C   0  1  Y  N  N  75.190  -57.742   -5.567   3.834   2.137   1.414  CBJ  YXM  28  
YXM  CBK  C29  C   0  1  Y  N  N  74.827  -59.019   -5.158   3.578   3.050   2.419  CBK  YXM  29  
YXM  CBL  C30  C   0  1  Y  N  N  74.582  -59.274   -3.814   3.317   2.610   3.703  CBL  YXM  30  
YXM  CBM  C31  C   0  1  Y  N  N  74.696  -58.251   -2.882   3.311   1.256   3.982  CBM  YXM  31  
YXM  CBN  C32  C   0  1  Y  N  N  75.062  -56.975   -3.294   3.568   0.342   2.977  CBN  YXM  32  
YXM  NAG  N1   N   1  1  N  N  N  86.292  -53.357   -3.528  -5.746  -3.619   0.262  NAG  YXM  33  
YXM  NAN  N2   N   0  1  N  N  N  82.599  -58.439   -5.422  -3.160   1.968  -0.290  NAN  YXM  34  
YXM  OAI  O1   O   0  1  N  N  N  84.676  -59.349   -3.716  -5.763   2.737   0.714  OAI  YXM  35  
YXM  OAK  O2   O   0  1  N  N  N  85.966  -52.844   -2.190  -5.281  -4.104   1.278  OAK  YXM  36  
YXM  OAL  O3   O  -1  1  N  N  N  86.939  -52.576   -4.485  -6.244  -4.340  -0.584  OAL  YXM  37  
YXM  OAO  O4   O   0  1  N  N  N  83.538  -60.275   -7.734  -4.389   4.567   0.044  OAO  YXM  38  
YXM  OAQ  O5   O   0  1  N  N  N  82.089  -56.828   -6.936  -1.739   1.935  -1.994  OAQ  YXM  39  
YXM  PAV  P1   P   0  1  N  N  N  75.765  -55.145   -5.129   4.167  -0.454   0.331  PAV  YXM  40  
YXM  H1   H1   H   0  1  N  N  N  83.996  -57.171   -2.825  -6.611   0.194  -2.190  H1   YXM  41  
YXM  H2   H2   H   0  1  N  N  N  86.727  -57.005   -6.110  -4.663   0.672   1.574  H2   YXM  42  
YXM  H3   H3   H   0  1  N  N  N  87.312  -54.684   -5.517  -4.729  -1.766   1.917  H3   YXM  43  
YXM  H4   H4   H   0  1  N  N  N  84.570  -54.842   -2.233  -6.677  -2.243  -1.847  H4   YXM  44  
YXM  H5   H5   H   0  1  N  N  N  85.942  -59.000   -5.287  -6.392   2.367  -1.219  H5   YXM  45  
YXM  H6   H6   H   0  1  N  N  N  84.180  -58.046   -6.785  -4.148   2.033  -2.140  H6   YXM  46  
YXM  H7   H7   H   0  1  N  N  N  83.369  -60.776   -5.732  -3.157   4.275  -1.589  H7   YXM  47  
YXM  H8   H8   H   0  1  N  N  N  85.043  -60.527   -6.334  -4.899   4.355  -1.947  H8   YXM  48  
YXM  H9   H9   H   0  1  N  N  N  79.749  -58.186   -5.787  -0.639   1.935   0.863  H9   YXM  49  
YXM  H10  H10  H   0  1  N  N  N  80.517  -57.678   -4.245  -1.120   0.262   0.494  H10  YXM  50  
YXM  H11  H11  H   0  1  N  N  N  80.208  -55.348   -4.752   0.248   0.324  -1.573  H11  YXM  51  
YXM  H12  H12  H   0  1  N  N  N  79.772  -55.704   -6.459   0.729   1.997  -1.204  H12  YXM  52  
YXM  H13  H13  H   0  1  N  N  N  77.735  -56.809   -5.816   1.759   1.233   0.919  H13  YXM  53  
YXM  H14  H14  H   0  1  N  N  N  78.236  -56.887   -4.092   1.277  -0.440   0.549  H14  YXM  54  
YXM  H15  H15  H   0  1  N  N  N  77.947  -54.161   -5.353   2.619  -0.302  -1.573  H15  YXM  55  
YXM  H16  H16  H   0  1  N  N  N  77.622  -54.697   -3.669   3.181   1.310  -1.069  H16  YXM  56  
YXM  H17  H17  H   0  1  N  N  N  76.927  -52.733   -4.163   2.220  -1.715   2.134  H17  YXM  57  
YXM  H18  H18  H   0  1  N  N  N  75.998  -50.911   -2.774   0.988  -3.846   2.073  H18  YXM  58  
YXM  H19  H19  H   0  1  N  N  N  73.659  -51.029   -1.987   1.312  -5.402   0.192  H19  YXM  59  
YXM  H20  H20  H   0  1  N  N  N  72.250  -52.970   -2.577   2.869  -4.827  -1.627  H20  YXM  60  
YXM  H21  H21  H   0  1  N  N  N  73.180  -54.786   -3.970   4.103  -2.697  -1.565  H21  YXM  61  
YXM  H22  H22  H   0  1  N  N  N  77.632  -53.759   -6.695   7.056  -0.939   0.102  H22  YXM  62  
YXM  H23  H23  H   0  1  N  N  N  77.674  -53.280   -9.115   8.726  -0.431  -1.635  H23  YXM  63  
YXM  H24  H24  H   0  1  N  N  N  75.842  -54.070  -10.568   8.045   0.729  -3.697  H24  YXM  64  
YXM  H25  H25  H   0  1  N  N  N  73.962  -55.348   -9.600   5.691   1.373  -4.027  H25  YXM  65  
YXM  H26  H26  H   0  1  N  N  N  73.912  -55.820   -7.179   4.019   0.860  -2.293  H26  YXM  66  
YXM  H27  H27  H   0  1  N  N  N  75.382  -57.547   -6.612   4.038   2.481   0.411  H27  YXM  67  
YXM  H28  H28  H   0  1  N  N  N  74.735  -59.813   -5.884   3.582   4.108   2.202  H28  YXM  68  
YXM  H29  H29  H   0  1  N  N  N  74.303  -60.267   -3.495   3.118   3.324   4.489  H29  YXM  69  
YXM  H30  H30  H   0  1  N  N  N  74.500  -58.447   -1.838   3.107   0.912   4.985  H30  YXM  70  
YXM  H31  H31  H   0  1  N  N  N  75.156  -56.183   -2.566   3.564  -0.715   3.195  H31  YXM  71  
YXM  H32  H32  H   0  1  N  N  N  82.275  -58.958   -4.631  -3.322   1.807   0.652  H32  YXM  72  
YXM  H33  H33  H   0  1  N  N  N  85.347  -59.256   -3.050  -5.084   2.522   1.368  H33  YXM  73  
YXM  H34  H34  H   0  1  N  N  N  83.574  -61.183   -8.010  -4.348   5.532   0.057  H34  YXM  74  
YXM  H36  H36  H   0  1  N  N  N       ?        ?        ?   5.213  -1.076   1.156  H36  YXM  75  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YXM  CBG  CBH  DOUB  Y  N   1  
YXM  CBG  CBF  SING  Y  N   2  
YXM  CBH  CBI  SING  Y  N   3  
YXM  CBF  CBE  DOUB  Y  N   4  
YXM  OAO  CAM  SING  N  N   5  
YXM  CBI  CAY  DOUB  Y  N   6  
YXM  CBE  CAY  SING  Y  N   7  
YXM  OAQ  CAP  DOUB  N  N   8  
YXM  CAY  PAV  SING  N  N   9  
YXM  CAM  CAJ  SING  N  N  10  
YXM  CAP  NAN  SING  N  N  11  
YXM  CAP  CAR  SING  N  N  12  
YXM  CAJ  NAN  SING  N  N  13  
YXM  CAJ  CAH  SING  N  N  14  
YXM  CBJ  CBK  DOUB  Y  N  15  
YXM  CBJ  CAX  SING  Y  N  16  
YXM  CAS  CAR  SING  N  N  17  
YXM  CAS  CAT  SING  N  N  18  
YXM  CAC  CAD  DOUB  Y  N  19  
YXM  CAC  CAB  SING  Y  N  20  
YXM  CBK  CBL  SING  Y  N  21  
YXM  PAV  CAU  SING  N  N  22  
YXM  PAV  CAX  SING  N  N  23  
YXM  PAV  CAW  SING  N  N  24  
YXM  CAT  CAU  SING  N  N  25  
YXM  CAD  CAE  SING  Y  N  26  
YXM  CAH  CAB  SING  N  N  27  
YXM  CAH  OAI  SING  N  N  28  
YXM  CAX  CBN  DOUB  Y  N  29  
YXM  CAB  CAA  DOUB  Y  N  30  
YXM  OAL  NAG  SING  N  N  31  
YXM  CAW  CAZ  DOUB  Y  N  32  
YXM  CAW  CBD  SING  Y  N  33  
YXM  CAE  NAG  SING  N  N  34  
YXM  CAE  CAF  DOUB  Y  N  35  
YXM  CAZ  CBA  SING  Y  N  36  
YXM  CBL  CBM  DOUB  Y  N  37  
YXM  CBD  CBC  DOUB  Y  N  38  
YXM  NAG  OAK  DOUB  N  N  39  
YXM  CAA  CAF  SING  Y  N  40  
YXM  CBN  CBM  SING  Y  N  41  
YXM  CBA  CBB  DOUB  Y  N  42  
YXM  CBC  CBB  SING  Y  N  43  
YXM  CAA  H1   SING  N  N  44  
YXM  CAC  H2   SING  N  N  45  
YXM  CAD  H3   SING  N  N  46  
YXM  CAF  H4   SING  N  N  47  
YXM  CAH  H5   SING  N  N  48  
YXM  CAJ  H6   SING  N  N  49  
YXM  CAM  H7   SING  N  N  50  
YXM  CAM  H8   SING  N  N  51  
YXM  CAR  H9   SING  N  N  52  
YXM  CAR  H10  SING  N  N  53  
YXM  CAS  H11  SING  N  N  54  
YXM  CAS  H12  SING  N  N  55  
YXM  CAT  H13  SING  N  N  56  
YXM  CAT  H14  SING  N  N  57  
YXM  CAU  H15  SING  N  N  58  
YXM  CAU  H16  SING  N  N  59  
YXM  CAZ  H17  SING  N  N  60  
YXM  CBA  H18  SING  N  N  61  
YXM  CBB  H19  SING  N  N  62  
YXM  CBC  H20  SING  N  N  63  
YXM  CBD  H21  SING  N  N  64  
YXM  CBE  H22  SING  N  N  65  
YXM  CBF  H23  SING  N  N  66  
YXM  CBG  H24  SING  N  N  67  
YXM  CBH  H25  SING  N  N  68  
YXM  CBI  H26  SING  N  N  69  
YXM  CBJ  H27  SING  N  N  70  
YXM  CBK  H28  SING  N  N  71  
YXM  CBL  H29  SING  N  N  72  
YXM  CBM  H30  SING  N  N  73  
YXM  CBN  H31  SING  N  N  74  
YXM  NAN  H32  SING  N  N  75  
YXM  OAI  H33  SING  N  N  76  
YXM  OAO  H34  SING  N  N  77  
YXM  PAV  H36  SING  N  N  78  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YXM  SMILES            ACDLabs               12.01  "[O-][N+](=O)c1ccc(cc1)C(O)C(CO)NC(=O)CCCCP(c1ccccc1)(c1ccccc1)c1ccccc1"  
YXM  InChI             InChI                 1.03   "InChI=1S/C32H35N2O5P/c35-24-30(32(37)25-19-21-26(22-20-25)34(38)39)33-31(36)18-10-11-23-40(27-12-4-1-5-13-27,28-14-6-2-7-15-28)29-16-8-3-9-17-29/h1-9,12-17,19-22,30,32,35,37,40H,10-11,18,23-24H2,(H,33,36)/t30-,32-/m1/s1"  
YXM  InChIKey          InChI                 1.03   QTBIPHCDEMVXOU-XLJNKUFUSA-N  
YXM  SMILES_CANONICAL  CACTVS                3.385  "OC[C@@H](NC(=O)CCCC[PH](c1ccccc1)(c2ccccc2)c3ccccc3)[C@H](O)c4ccc(cc4)[N+]([O-])=O"  
YXM  SMILES            CACTVS                3.385  "OC[CH](NC(=O)CCCC[PH](c1ccccc1)(c2ccccc2)c3ccccc3)[CH](O)c4ccc(cc4)[N+]([O-])=O"  
YXM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)P(CCCCC(=O)N[C@H](CO)[C@@H](c2ccc(cc2)[N+](=O)[O-])O)(c3ccccc3)c4ccccc4"  
YXM  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)P(CCCCC(=O)NC(CO)C(c2ccc(cc2)[N+](=O)[O-])O)(c3ccccc3)c4ccccc4"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YXM  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-[(1R,2R)-1,3-dihydroxy-1-(4-nitrophenyl)propan-2-yl]-5-(triphenyl-lambda~5~-phosphanyl)pentanamide"  
YXM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{N}-[(1~{R},2~{R})-1-(4-nitrophenyl)-1,3-bis(oxidanyl)propan-2-yl]-5-(triphenyl-$l^{5}-phosphanyl)pentanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YXM  "Create component"  2021-04-05  RCSB  
YXM  "Initial release"   2021-04-21  RCSB  
##
