data_2YN
# 
_chem_comp.id                                    2YN 
_chem_comp.name                                  "(1R,3S,4S,5R,6S)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl bis[trihydrogen (diphosphate)]" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H20 O30 P8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-04-17 
_chem_comp.pdbx_modified_date                    2014-08-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        819.995 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2YN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4Q4D 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2YN O55 O55 O 0 1 N N N 1.724  24.332 16.644 -6.675 -2.957 -1.491 O55 2YN 1  
2YN PB5 PB5 P 0 1 N N N 3.077  23.578 16.160 -5.910 -2.865 -0.077 PB5 2YN 2  
2YN O65 O65 O 0 1 N N N 4.024  24.620 15.689 -6.633 -1.931 0.815  O65 2YN 3  
2YN O75 O75 O 0 1 N N N 3.528  22.572 17.162 -5.859 -4.324 0.601  O75 2YN 4  
2YN O45 O45 O 0 1 N N N 2.558  22.756 14.857 -4.410 -2.329 -0.312 O45 2YN 5  
2YN PA5 PA5 P 0 1 N N N 1.340  21.649 14.863 -3.268 -1.739 0.657  PA5 2YN 6  
2YN O35 O35 O 0 1 N N N 0.281  22.050 15.809 -2.521 -2.952 1.407  O35 2YN 7  
2YN O25 O25 O 0 1 N N N 1.921  20.286 14.925 -3.888 -0.845 1.661  O25 2YN 8  
2YN O15 O15 O 0 1 N N N 0.771  21.935 13.349 -2.200 -0.908 -0.215 O15 2YN 9  
2YN C5  C5  C 0 1 N N R 0.682  20.916 12.383 -1.123 -0.173 0.368  C5  2YN 10 
2YN C4  C4  C 0 1 N N N -0.769 20.790 12.051 0.208  -0.720 -0.152 C4  2YN 11 
2YN O14 O14 O 0 1 N N N -1.438 20.348 13.256 0.327  -2.100 0.200  O14 2YN 12 
2YN PA4 PA4 P 0 1 N N N -2.675 21.156 13.925 0.486  -3.273 -0.891 PA4 2YN 13 
2YN O34 O34 O 0 1 N N N -2.536 22.563 13.525 0.460  -4.702 -0.151 O34 2YN 14 
2YN O24 O24 O 0 1 N N N -3.797 20.408 13.360 -0.630 -3.199 -1.861 O24 2YN 15 
2YN O44 O44 O 0 1 N N N -2.413 20.919 15.364 1.885  -3.096 -1.669 O44 2YN 16 
2YN C6  C6  C 0 1 N N S 1.508  21.318 11.164 -1.250 1.304  -0.009 C6  2YN 17 
2YN O16 O16 O 0 1 N N N 2.887  21.292 11.556 -2.493 1.815  0.478  O16 2YN 18 
2YN PA6 PA6 P 0 1 N N N 3.763  22.624 11.596 -3.624 2.433  -0.487 PA6 2YN 19 
2YN O46 O46 O 0 1 N N N 2.819  23.753 11.557 -4.934 2.786  0.381  O46 2YN 20 
2YN O26 O26 O 0 1 N N N 4.547  22.511 12.841 -3.063 3.773  -1.181 O26 2YN 21 
2YN O36 O36 O 0 1 N N N 4.536  22.414 10.333 -3.976 1.446  -1.531 O36 2YN 22 
2YN C1  C1  C 0 1 N N N 1.329  20.321 10.041 -0.096 2.091  0.616  C1  2YN 23 
2YN O11 O11 O 0 1 N N N 2.050  20.836 8.844  -0.214 3.471  0.264  O11 2YN 24 
2YN PA1 PA1 P 0 1 N N N 3.367  20.043 8.306  -0.373 4.644  1.355  PA1 2YN 25 
2YN O21 O21 O 0 1 N N N 3.813  20.821 7.141  0.743  4.570  2.324  O21 2YN 26 
2YN O31 O31 O 0 1 N N N 4.284  20.058 9.479  -0.347 6.073  0.614  O31 2YN 27 
2YN O41 O41 O 0 1 N N N 2.775  18.708 8.006  -1.772 4.468  2.132  O41 2YN 28 
2YN C2  C2  C 0 1 N N S -0.170 20.123 9.721  1.235  1.544  0.095  C2  2YN 29 
2YN O12 O12 O 0 1 N N N -0.648 21.333 9.192  1.282  1.679  -1.327 O12 2YN 30 
2YN PA2 PA2 P 0 1 N N N -1.081 21.461 7.612  2.406  2.543  -2.090 PA2 2YN 31 
2YN O22 O22 O 0 1 N N N -0.871 22.890 7.366  2.076  2.580  -3.665 O22 2YN 32 
2YN O32 O32 O 0 1 N N N -0.225 20.556 6.823  2.415  3.922  -1.554 O32 2YN 33 
2YN O42 O42 O 0 1 N N N -2.497 21.006 7.720  3.849  1.868  -1.859 O42 2YN 34 
2YN C3  C3  C 0 1 N N S -0.948 19.750 10.992 1.362  0.067  0.472  C3  2YN 35 
2YN O13 O13 O 0 1 N N N -2.357 19.606 10.716 2.605  -0.444 -0.014 O13 2YN 36 
2YN PA3 PA3 P 0 1 N N N -2.886 18.185 10.135 3.736  -1.062 0.950  PA3 2YN 37 
2YN O23 O23 O 0 1 N N N -1.919 17.004 10.684 3.175  -2.402 1.645  O23 2YN 38 
2YN O33 O33 O 0 1 N N N -2.889 18.197 8.643  4.088  -0.075 1.995  O33 2YN 39 
2YN O43 O43 O 0 1 N N N -4.268 17.962 10.876 5.046  -1.415 0.083  O43 2YN 40 
2YN PB3 PB3 P 0 1 N N N -5.541 18.878 10.495 6.576  -1.755 0.454  PB3 2YN 41 
2YN O63 O63 O 0 1 N N N -6.681 17.946 10.488 6.688  -3.294 0.911  O63 2YN 42 
2YN O73 O73 O 0 1 N N N -5.581 19.914 11.520 7.508  -1.508 -0.834 O73 2YN 43 
2YN O53 O53 O 0 1 N N N -5.127 19.334 9.147  7.021  -0.878 1.561  O53 2YN 44 
2YN H1  H1  H 0 1 N N N 1.823  25.269 16.525 -7.586 -3.273 -1.425 H1  2YN 45 
2YN H2  H2  H 0 1 N N N 4.435  22.737 17.391 -5.398 -4.989 0.070  H2  2YN 46 
2YN H3  H3  H 0 1 N N N 0.084  21.325 16.391 -2.092 -3.579 0.809  H3  2YN 47 
2YN H4  H4  H 0 1 N N N 1.058  19.961 12.779 -1.158 -0.276 1.453  H4  2YN 48 
2YN H5  H5  H 0 1 N N N -1.169 21.756 11.709 0.244  -0.617 -1.237 H5  2YN 49 
2YN H6  H6  H 0 1 N N N -3.235 22.792 12.924 0.551  -5.457 -0.748 H6  2YN 50 
2YN H7  H7  H 0 1 N N N -3.043 20.293 15.702 2.661  -3.134 -1.094 H7  2YN 51 
2YN H8  H8  H 0 1 N N N 1.210  22.322 10.827 -1.214 1.407  -1.093 H8  2YN 52 
2YN H9  H9  H 0 1 N N N 2.862  24.173 10.706 -5.658 3.164  -0.137 H9  2YN 53 
2YN H10 H10 H 0 1 N N N 5.452  22.315 12.629 -2.812 4.465  -0.555 H10 2YN 54 
2YN H11 H11 H 0 1 N N N 1.759  19.354 10.342 -0.131 1.988  1.701  H11 2YN 55 
2YN H12 H12 H 0 1 N N N 5.045  20.591 9.280  -0.439 6.828  1.212  H12 2YN 56 
2YN H13 H13 H 0 1 N N N 2.779  18.563 7.067  -2.549 4.505  1.558  H13 2YN 57 
2YN H14 H14 H 0 1 N N N -0.272 19.309 8.988  2.057  2.105  0.540  H14 2YN 58 
2YN H15 H15 H 0 1 N N N -0.191 23.003 6.713  2.714  3.085  -4.188 H15 2YN 59 
2YN H16 H16 H 0 1 N N N -2.604 20.189 7.248  3.916  0.960  -2.187 H16 2YN 60 
2YN H17 H17 H 0 1 N N N -0.552 18.795 11.367 1.327  -0.036 1.557  H17 2YN 61 
2YN H18 H18 H 0 1 N N N -1.535 16.541 9.949  2.925  -3.094 1.019  H18 2YN 62 
2YN H19 H19 H 0 1 N N N -6.961 17.795 9.593  6.412  -3.927 0.234  H19 2YN 63 
2YN H20 H20 H 0 1 N N N -5.324 20.746 11.140 8.445  -1.693 -0.683 H20 2YN 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2YN O32 PA2 DOUB N N 1  
2YN O21 PA1 DOUB N N 2  
2YN O22 PA2 SING N N 3  
2YN PA2 O42 SING N N 4  
2YN PA2 O12 SING N N 5  
2YN O41 PA1 SING N N 6  
2YN PA1 O11 SING N N 7  
2YN PA1 O31 SING N N 8  
2YN O33 PA3 DOUB N N 9  
2YN O11 C1  SING N N 10 
2YN O53 PB3 DOUB N N 11 
2YN O12 C2  SING N N 12 
2YN C2  C1  SING N N 13 
2YN C2  C3  SING N N 14 
2YN C1  C6  SING N N 15 
2YN PA3 O23 SING N N 16 
2YN PA3 O13 SING N N 17 
2YN PA3 O43 SING N N 18 
2YN O36 PA6 DOUB N N 19 
2YN O63 PB3 SING N N 20 
2YN PB3 O43 SING N N 21 
2YN PB3 O73 SING N N 22 
2YN O13 C3  SING N N 23 
2YN C3  C4  SING N N 24 
2YN C6  O16 SING N N 25 
2YN C6  C5  SING N N 26 
2YN O16 PA6 SING N N 27 
2YN O46 PA6 SING N N 28 
2YN PA6 O26 SING N N 29 
2YN C4  C5  SING N N 30 
2YN C4  O14 SING N N 31 
2YN C5  O15 SING N N 32 
2YN O14 PA4 SING N N 33 
2YN O15 PA5 SING N N 34 
2YN O24 PA4 DOUB N N 35 
2YN O34 PA4 SING N N 36 
2YN PA4 O44 SING N N 37 
2YN O45 PA5 SING N N 38 
2YN O45 PB5 SING N N 39 
2YN PA5 O25 DOUB N N 40 
2YN PA5 O35 SING N N 41 
2YN O65 PB5 DOUB N N 42 
2YN PB5 O55 SING N N 43 
2YN PB5 O75 SING N N 44 
2YN O55 H1  SING N N 45 
2YN O75 H2  SING N N 46 
2YN O35 H3  SING N N 47 
2YN C5  H4  SING N N 48 
2YN C4  H5  SING N N 49 
2YN O34 H6  SING N N 50 
2YN O44 H7  SING N N 51 
2YN C6  H8  SING N N 52 
2YN O46 H9  SING N N 53 
2YN O26 H10 SING N N 54 
2YN C1  H11 SING N N 55 
2YN O31 H12 SING N N 56 
2YN O41 H13 SING N N 57 
2YN C2  H14 SING N N 58 
2YN O22 H15 SING N N 59 
2YN O42 H16 SING N N 60 
2YN C3  H17 SING N N 61 
2YN O23 H18 SING N N 62 
2YN O63 H19 SING N N 63 
2YN O73 H20 SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2YN SMILES           ACDLabs              12.01 "O=P(O)(O)OC1C(OP(=O)(O)O)C(OP(=O)(O)O)C(OP(=O)(O)OP(=O)(O)O)C(OP(=O)(O)O)C1OP(=O)(OP(=O)(O)O)O" 
2YN InChI            InChI                1.03  
;InChI=1S/C6H20O30P8/c7-37(8,9)29-1-2(30-38(10,11)12)5(33-43(25,26)35-41(19,20)21)4(32-40(16,17)18)6(3(1)31-39(13,14)15)34-44(27,28)36-42(22,23)24/h1-6H,(H,25,26)(H,27,28)(H2,7,8,9)(H2,10,11,12)(H2,13,14,15)(H2,16,17,18)(H2,19,20,21)(H2,22,23,24)/t1-,2-,3-,4-,5+,6-/m0/s1
;
2YN InChIKey         InChI                1.03  HHQOOERQSFJGEP-ZSIQDKGESA-N 
2YN SMILES_CANONICAL CACTVS               3.385 "O[P](O)(=O)O[C@H]1[C@H](O[P](O)(O)=O)[C@@H](O[P](O)(=O)O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@@H](O[P](O)(=O)O[P](O)(O)=O)[C@H]1O[P](O)(O)=O" 
2YN SMILES           CACTVS               3.385 "O[P](O)(=O)O[CH]1[CH](O[P](O)(O)=O)[CH](O[P](O)(=O)O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O[P](O)(=O)O[P](O)(O)=O)[CH]1O[P](O)(O)=O" 
2YN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[C@H]1([C@H](C([C@H]([C@H](C1OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)OP(=O)(O)O)OP(=O)(O)O" 
2YN SMILES           "OpenEye OEToolkits" 1.7.6 "C1(C(C(C(C(C1OP(=O)(O)O)OP(=O)(O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2YN "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,3S,4S,5R,6S)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl bis[trihydrogen (diphosphate)]"                        
2YN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(1R,3S,4S,6S)-3-[oxidanyl(phosphonooxy)phosphoryl]oxy-2,4,5,6-tetraphosphonooxy-cyclohexyl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2YN "Create component" 2014-04-17 RCSB 
2YN "Initial release"  2014-08-06 RCSB 
# 
