data_4YN
# 
_chem_comp.id                                    4YN 
_chem_comp.name                                  "(2R,5R)-4-[2-(6-benzyl-3,3-dimethyl-2,3-dihydro-1H-pyrrolo[3,2-c]pyridin-1-yl)-2-oxoethyl]-5-(methoxymethyl)-2-methylpiperazin-1-ium" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H35 N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2015-06-25 
_chem_comp.pdbx_modified_date                    2015-08-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        423.571 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4YN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5C83 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4YN C1  C1  C 0 1 N N N -14.390 -15.634 -4.326  -3.569 0.161  -3.958 C1  4YN 1  
4YN C3  C2  C 0 1 N N N -16.202 -16.332 -2.919  -2.918 1.439  -2.038 C3  4YN 2  
4YN C5  C3  C 0 1 N N N -15.529 -17.775 -0.988  -4.719 2.049  -0.415 C5  4YN 3  
4YN C7  C4  C 0 1 N N R -15.949 -20.224 -1.049  -4.804 0.989  1.736  C7  4YN 4  
4YN C8  C5  C 0 1 N N N -15.463 -21.557 -0.498  -5.154 1.186  3.212  C8  4YN 5  
4YN C11 C6  C 0 1 N N N -16.455 -18.870 -4.553  -1.600 -0.016 0.029  C11 4YN 6  
4YN C12 C7  C 0 1 N N N -15.173 -19.004 -5.358  -1.487 -1.475 0.389  C12 4YN 7  
4YN C15 C8  C 0 1 N N N -16.506 -18.424 -7.414  -0.059 -3.507 0.640  C15 4YN 8  
4YN C16 C9  C 0 1 N N N -16.151 -18.409 -8.920  1.444  -3.732 0.402  C16 4YN 9  
4YN C19 C10 C 0 1 Y N N -14.640 -18.560 -8.908  1.960  -2.388 -0.053 C19 4YN 10 
4YN C22 C11 C 0 1 Y N N -11.958 -18.874 -8.525  2.447  0.173  -0.820 C22 4YN 11 
4YN C23 C12 C 0 1 N N N -10.467 -19.038 -8.390  2.740  1.588  -1.248 C23 4YN 12 
4YN C24 C13 C 0 1 Y N N -10.012 -20.438 -8.707  3.840  2.156  -0.389 C24 4YN 13 
4YN C25 C14 C 0 1 Y N N -10.129 -21.448 -7.763  5.160  2.012  -0.773 C25 4YN 14 
4YN C26 C15 C 0 1 Y N N -9.711  -22.732 -8.056  6.170  2.533  0.015  C26 4YN 15 
4YN C27 C16 C 0 1 Y N N -9.175  -23.018 -9.289  5.859  3.196  1.187  C27 4YN 16 
4YN C28 C17 C 0 1 Y N N -9.053  -22.026 -10.234 4.539  3.340  1.571  C28 4YN 17 
4YN C31 C18 C 0 1 Y N N -14.163 -18.773 -7.625  0.897  -1.494 -0.077 C31 4YN 18 
4YN O2  O1  O 0 1 N N N -15.782 -15.956 -4.236  -3.792 0.444  -2.576 O2  4YN 19 
4YN C4  C19 C 0 1 N N R -15.585 -17.679 -2.513  -3.246 1.660  -0.560 C4  4YN 20 
4YN N6  N1  N 1 1 N N N -15.074 -19.118 -0.537  -5.037 2.242  1.005  N6  4YN 21 
4YN C9  C20 C 0 1 N N N -15.935 -20.184 -2.573  -3.332 0.591  1.609  C9  4YN 22 
4YN N10 N2  N 0 1 N N N -16.286 -18.854 -3.090  -2.993 0.421  0.189  N10 4YN 23 
4YN O13 O2  O 0 1 N N N -14.119 -19.298 -4.808  -2.470 -2.090 0.745  O13 4YN 24 
4YN N14 N3  N 0 1 N N N -15.245 -18.784 -6.714  -0.293 -2.097 0.316  N14 4YN 25 
4YN C17 C21 C 0 1 N N N -16.826 -19.557 -9.663  2.132  -4.157 1.701  C17 4YN 26 
4YN C18 C22 C 0 1 N N N -16.561 -17.092 -9.562  1.660  -4.784 -0.688 C18 4YN 27 
4YN C20 C23 C 0 1 Y N N -13.739 -18.513 -9.953  3.220  -1.960 -0.413 C20 4YN 28 
4YN N21 N4  N 0 1 Y N N -12.425 -18.667 -9.768  3.428  -0.709 -0.782 N21 4YN 29 
4YN C29 C24 C 0 1 Y N N -9.469  -20.742 -9.947  3.529  2.825  0.780  C29 4YN 30 
4YN C30 C25 C 0 1 Y N N -12.805 -18.934 -7.414  1.161  -0.178 -0.474 C30 4YN 31 
4YN H32 H1  H 0 1 N N N -14.143 -15.357 -5.362  -2.549 -0.199 -4.096 H32 4YN 32 
4YN H33 H2  H 0 1 N N N -14.165 -14.790 -3.657  -4.272 -0.604 -4.290 H33 4YN 33 
4YN H34 H3  H 0 1 N N N -13.792 -16.508 -4.028  -3.717 1.069  -4.544 H34 4YN 34 
4YN H35 H4  H 0 1 N N N -15.883 -15.559 -2.204  -1.885 1.106  -2.136 H35 4YN 35 
4YN H36 H5  H 0 1 N N N -17.299 -16.418 -2.901  -3.052 2.373  -2.583 H36 4YN 36 
4YN H39 H6  H 0 1 N N N -14.829 -17.016 -0.609  -4.905 2.976  -0.959 H39 4YN 37 
4YN H38 H7  H 0 1 N N N -16.533 -17.584 -0.582  -5.345 1.256  -0.824 H38 4YN 38 
4YN H42 H8  H 0 1 N N N -16.979 -20.054 -0.702  -5.430 0.201  1.316  H42 4YN 39 
4YN H44 H9  H 0 1 N N N -15.493 -21.533 0.601   -6.203 1.469  3.302  H44 4YN 40 
4YN H43 H10 H 0 1 N N N -16.114 -22.364 -0.865  -4.980 0.257  3.754  H43 4YN 41 
4YN H45 H11 H 0 1 N N N -14.431 -21.738 -0.833  -4.528 1.974  3.632  H45 4YN 42 
4YN H48 H12 H 0 1 N N N -16.944 -17.930 -4.848  -0.957 0.571  0.684  H48 4YN 43 
4YN H49 H13 H 0 1 N N N -17.107 -19.718 -4.810  -1.291 0.127  -1.007 H49 4YN 44 
4YN H51 H14 H 0 1 N N N -16.856 -17.432 -7.091  -0.646 -4.149 -0.017 H51 4YN 45 
4YN H50 H15 H 0 1 N N N -17.286 -19.172 -7.210  -0.312 -3.703 1.683  H50 4YN 46 
4YN H60 H16 H 0 1 N N N -10.177 -18.798 -7.356  3.053  1.595  -2.292 H60 4YN 47 
4YN H59 H17 H 0 1 N N N -9.971  -18.340 -9.081  1.841  2.195  -1.135 H59 4YN 48 
4YN H61 H18 H 0 1 N N N -10.550 -21.229 -6.793  5.403  1.493  -1.689 H61 4YN 49 
4YN H62 H19 H 0 1 N N N -9.806  -23.512 -7.315  7.201  2.420  -0.285 H62 4YN 50 
4YN H63 H20 H 0 1 N N N -8.849  -24.022 -9.516  6.648  3.602  1.803  H63 4YN 51 
4YN H64 H21 H 0 1 N N N -8.631  -22.252 -11.202 4.296  3.862  2.484  H64 4YN 52 
4YN H37 H22 H 0 1 N N N -14.549 -17.689 -2.881  -2.618 2.459  -0.164 H37 4YN 53 
4YN H41 H23 H 0 1 N N N -15.082 -19.140 0.463   -4.449 2.968  1.386  H41 4YN 54 
4YN H40 H24 H 0 1 N N N -14.142 -19.268 -0.867  -6.006 2.510  1.099  H40 4YN 55 
4YN H46 H25 H 0 1 N N N -16.661 -20.917 -2.955  -2.706 1.372  2.041  H46 4YN 56 
4YN H47 H26 H 0 1 N N N -14.927 -20.448 -2.926  -3.161 -0.346 2.139  H47 4YN 57 
4YN H54 H28 H 0 1 N N N -16.534 -20.513 -9.204  1.953  -3.406 2.470  H54 4YN 58 
4YN H52 H29 H 0 1 N N N -17.918 -19.440 -9.604  1.730  -5.116 2.028  H52 4YN 59 
4YN H53 H30 H 0 1 N N N -16.513 -19.546 -10.717 3.204  -4.253 1.529  H53 4YN 60 
4YN H56 H31 H 0 1 N N N -16.078 -16.259 -9.031  2.727  -4.887 -0.887 H56 4YN 61 
4YN H55 H32 H 0 1 N N N -16.248 -17.085 -10.617 1.259  -5.741 -0.354 H55 4YN 62 
4YN H57 H33 H 0 1 N N N -17.654 -16.980 -9.503  1.149  -4.474 -1.599 H57 4YN 63 
4YN H58 H34 H 0 1 N N N -14.109 -18.346 -10.954 4.046  -2.655 -0.394 H58 4YN 64 
4YN H65 H35 H 0 1 N N N -9.371  -19.968 -10.693 2.498  2.937  1.080  H65 4YN 65 
4YN H66 H36 H 0 1 N N N -12.412 -19.101 -6.422  0.366  0.552  -0.508 H66 4YN 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4YN C28 C29 DOUB Y N 1  
4YN C28 C27 SING Y N 2  
4YN C20 N21 DOUB Y N 3  
4YN C20 C19 SING Y N 4  
4YN C29 C24 SING Y N 5  
4YN N21 C22 SING Y N 6  
4YN C17 C16 SING N N 7  
4YN C18 C16 SING N N 8  
4YN C27 C26 DOUB Y N 9  
4YN C16 C19 SING N N 10 
4YN C16 C15 SING N N 11 
4YN C19 C31 DOUB Y N 12 
4YN C24 C23 SING N N 13 
4YN C24 C25 DOUB Y N 14 
4YN C22 C23 SING N N 15 
4YN C22 C30 DOUB Y N 16 
4YN C26 C25 SING Y N 17 
4YN C31 C30 SING Y N 18 
4YN C31 N14 SING N N 19 
4YN C15 N14 SING N N 20 
4YN N14 C12 SING N N 21 
4YN C12 O13 DOUB N N 22 
4YN C12 C11 SING N N 23 
4YN C11 N10 SING N N 24 
4YN C1  O2  SING N N 25 
4YN O2  C3  SING N N 26 
4YN N10 C9  SING N N 27 
4YN N10 C4  SING N N 28 
4YN C3  C4  SING N N 29 
4YN C9  C7  SING N N 30 
4YN C4  C5  SING N N 31 
4YN C7  N6  SING N N 32 
4YN C7  C8  SING N N 33 
4YN C5  N6  SING N N 34 
4YN C1  H32 SING N N 35 
4YN C1  H33 SING N N 36 
4YN C1  H34 SING N N 37 
4YN C3  H35 SING N N 38 
4YN C3  H36 SING N N 39 
4YN C5  H39 SING N N 40 
4YN C5  H38 SING N N 41 
4YN C7  H42 SING N N 42 
4YN C8  H44 SING N N 43 
4YN C8  H43 SING N N 44 
4YN C8  H45 SING N N 45 
4YN C11 H48 SING N N 46 
4YN C11 H49 SING N N 47 
4YN C15 H51 SING N N 48 
4YN C15 H50 SING N N 49 
4YN C23 H60 SING N N 50 
4YN C23 H59 SING N N 51 
4YN C25 H61 SING N N 52 
4YN C26 H62 SING N N 53 
4YN C27 H63 SING N N 54 
4YN C28 H64 SING N N 55 
4YN C4  H37 SING N N 56 
4YN N6  H41 SING N N 57 
4YN N6  H40 SING N N 58 
4YN C9  H46 SING N N 59 
4YN C9  H47 SING N N 60 
4YN C17 H54 SING N N 61 
4YN C17 H52 SING N N 62 
4YN C17 H53 SING N N 63 
4YN C18 H56 SING N N 64 
4YN C18 H55 SING N N 65 
4YN C18 H57 SING N N 66 
4YN C20 H58 SING N N 67 
4YN C29 H65 SING N N 68 
4YN C30 H66 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4YN SMILES           ACDLabs              12.01 "COCC4C[NH2+]C(C)CN4CC(=O)N3CC(c2c3cc(Cc1ccccc1)nc2)(C)C"                                                                                                                          
4YN InChI            InChI                1.03  "InChI=1S/C25H34N4O2/c1-18-14-28(21(12-26-18)16-31-4)15-24(30)29-17-25(2,3)22-13-27-20(11-23(22)29)10-19-8-6-5-7-9-19/h5-9,11,13,18,21,26H,10,12,14-17H2,1-4H3/p+1/t18-,21-/m1/s1" 
4YN InChIKey         InChI                1.03  XOZJVPQFZSCGTE-WIYYLYMNSA-O                                                                                                                                                        
4YN SMILES_CANONICAL CACTVS               3.385 "COC[C@H]1C[NH2+][C@H](C)CN1CC(=O)N2CC(C)(C)c3cnc(Cc4ccccc4)cc23"                                                                                                                  
4YN SMILES           CACTVS               3.385 "COC[CH]1C[NH2+][CH](C)CN1CC(=O)N2CC(C)(C)c3cnc(Cc4ccccc4)cc23"                                                                                                                    
4YN SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[C@@H]1CN([C@H](C[NH2+]1)COC)CC(=O)N2CC(c3c2cc(nc3)Cc4ccccc4)(C)C"                                                                                                               
4YN SMILES           "OpenEye OEToolkits" 1.9.2 "CC1CN(C(C[NH2+]1)COC)CC(=O)N2CC(c3c2cc(nc3)Cc4ccccc4)(C)C"                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4YN "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,5R)-4-[2-(6-benzyl-3,3-dimethyl-2,3-dihydro-1H-pyrrolo[3,2-c]pyridin-1-yl)-2-oxoethyl]-5-(methoxymethyl)-2-methylpiperazin-1-ium" 
4YN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "1-[3,3-dimethyl-6-(phenylmethyl)-2H-pyrrolo[3,2-c]pyridin-1-yl]-2-[(2R,5R)-2-(methoxymethyl)-5-methyl-piperazin-4-ium-1-yl]ethanone"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4YN "Create component" 2015-06-25 EBI  
4YN "Initial release"  2015-08-12 RCSB 
# 
