data_6FN
# 
_chem_comp.id                                    6FN 
_chem_comp.name                                  
;2'-deoxy-4'-ethynyl-2-fluoroadenosine 5'-(tetrahydrogen triphosphate)
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H15 F N5 O12 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-03-30 
_chem_comp.pdbx_modified_date                    2016-07-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        533.193 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6FN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5J2M 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6FN C4    C1  C 0 1 Y N N -40.950 -2.810 -27.618 5.309  -0.773 0.091  C4    6FN 1  
6FN N3    N1  N 0 1 Y N N -39.649 -2.654 -27.708 6.278  -0.327 0.885  N3    6FN 2  
6FN C2    C2  C 0 1 Y N N -39.052 -2.698 -28.899 7.423  -0.975 0.975  C2    6FN 3  
6FN F32   F1  F 0 1 N N N -37.698 -2.536 -28.974 8.383  -0.490 1.793  F32   6FN 4  
6FN N1    N2  N 0 1 Y N N -39.759 -2.900 -30.022 7.667  -2.083 0.295  N1    6FN 5  
6FN C6    C3  C 0 1 Y N N -41.081 -3.064 -29.993 6.756  -2.601 -0.523 C6    6FN 6  
6FN N6    N3  N 0 1 N N N -41.842 -3.280 -31.213 7.020  -3.761 -1.231 N6    6FN 7  
6FN C5    C4  C 0 1 Y N N -41.706 -3.021 -28.768 5.522  -1.942 -0.657 C5    6FN 8  
6FN N7    N4  N 0 1 Y N N -43.058 -3.145 -28.288 4.394  -2.169 -1.373 N7    6FN 9  
6FN C8    C5  C 0 1 Y N N -42.958 -2.999 -26.944 3.529  -1.230 -1.127 C8    6FN 10 
6FN N9    N5  N 0 1 Y N N -41.767 -2.825 -26.716 4.042  -0.350 -0.220 N9    6FN 11 
6FN "C1'" C6  C 0 1 N N R -41.338 -2.633 -25.377 3.370  0.839  0.311  "C1'" 6FN 12 
6FN "C2'" C7  C 0 1 N N N -41.145 -1.168 -25.110 3.753  2.095  -0.512 "C2'" 6FN 13 
6FN "C3'" C8  C 0 1 N N S -42.354 -0.771 -24.412 2.544  3.029  -0.259 "C3'" 6FN 14 
6FN "O3'" O1  O 0 1 N N N -42.086 0.347  -23.504 2.843  3.965  0.779  "O3'" 6FN 15 
6FN "C4'" C9  C 0 1 N N R -42.819 -1.978 -23.677 1.416  2.076  0.184  "C4'" 6FN 16 
6FN C33   C10 C 0 1 N N N -42.222 -2.028 -22.290 1.000  2.397  1.558  C33   6FN 17 
6FN C34   C11 C 0 1 N N N -41.764 -2.071 -21.198 0.668  2.653  2.655  C34   6FN 18 
6FN "O4'" O2  O 0 1 N N N -42.377 -3.149 -24.428 1.941  0.739  0.128  "O4'" 6FN 19 
6FN "C5'" C12 C 0 1 N N N -44.340 -1.958 -23.554 0.223  2.206  -0.765 "C5'" 6FN 20 
6FN "O5'" O3  O 0 1 N N N -44.922 -2.011 -24.819 -0.859 1.408  -0.282 "O5'" 6FN 21 
6FN PA    P1  P 0 1 N N N -46.238 -1.062 -25.094 -2.278 1.306  -1.035 PA    6FN 22 
6FN O3A   O4  O 0 1 N N N -45.750 0.464  -25.455 -3.296 0.429  -0.147 O3A   6FN 23 
6FN PB    P2  P 0 1 N N N -45.510 1.614  -24.310 -4.890 0.209  -0.163 PB    6FN 24 
6FN O3B   O5  O 0 1 N N N -46.490 2.891  -24.633 -5.263 -1.083 0.722  O3B   6FN 25 
6FN PG    P3  P 0 1 N N N -48.118 2.805  -24.417 -6.541 -2.059 0.794  PG    6FN 26 
6FN O3G   O6  O 0 1 N N N -48.809 2.648  -25.695 -7.780 -1.260 0.663  O3G   6FN 27 
6FN O2G   O7  O 0 1 N N N -48.623 4.150  -23.610 -6.465 -3.131 -0.406 O2G   6FN 28 
6FN O1G   O8  O 0 1 N N N -48.504 1.579  -23.715 -6.547 -2.833 2.205  O1G   6FN 29 
6FN O2B   O9  O 0 1 N N N -45.763 1.106  -22.960 -5.617 1.508  0.451  O2B   6FN 30 
6FN O1B   O10 O 0 1 N N N -44.101 1.997  -24.235 -5.346 0.001  -1.556 O1B   6FN 31 
6FN O2A   O11 O 0 1 N N N -47.070 -1.603 -26.163 -2.834 2.665  -1.224 O2A   6FN 32 
6FN O1A   O12 O 0 1 N N N -47.148 -1.071 -23.948 -2.076 0.604  -2.470 O1A   6FN 33 
6FN H1    H1  H 0 1 N N N -41.222 -3.279 -31.998 7.877  -4.205 -1.133 H1    6FN 34 
6FN H2    H2  H 0 1 N N N -42.312 -4.161 -31.161 6.347  -4.130 -1.824 H2    6FN 35 
6FN H3    H3  H 0 1 N N N -43.762 -3.030 -26.223 2.543  -1.165 -1.564 H3    6FN 36 
6FN H4    H4  H 0 1 N N N -40.390 -3.161 -25.199 3.616  0.979  1.363  H4    6FN 37 
6FN H5    H5  H 0 1 N N N -40.258 -1.000 -24.481 4.674  2.541  -0.135 H5    6FN 38 
6FN H6    H6  H 0 1 N N N -41.038 -0.611 -26.052 3.843  1.855  -1.571 H6    6FN 39 
6FN H7    H7  H 0 1 N N N -43.122 -0.475 -25.142 2.266  3.550  -1.175 H7    6FN 40 
6FN H8    H8  H 0 1 N N N -42.731 1.031  -23.644 3.585  4.552  0.577  H8    6FN 41 
6FN H9    H9  H 0 1 N N N -41.354 -2.109 -20.221 0.371  2.882  3.636  H9    6FN 42 
6FN H10   H10 H 0 1 N N N -44.652 -1.033 -23.048 -0.089 3.250  -0.815 H10   6FN 43 
6FN H11   H11 H 0 1 N N N -44.669 -2.827 -22.965 0.511  1.866  -1.760 H11   6FN 44 
6FN H12   H12 H 0 1 N N N -49.286 4.597  -24.123 -5.677 -3.691 -0.384 H12   6FN 45 
6FN H13   H13 H 0 1 N N N -49.070 1.059  -24.273 -7.292 -3.440 2.318  H13   6FN 46 
6FN H14   H14 H 0 1 N N N -44.968 1.169  -22.443 -5.366 1.705  1.363  H14   6FN 47 
6FN H15   H15 H 0 1 N N N -47.992 -1.414 -24.216 -1.714 -0.291 -2.422 H15   6FN 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6FN N6    C6    SING N N 1  
6FN N1    C6    DOUB Y N 2  
6FN N1    C2    SING Y N 3  
6FN C6    C5    SING Y N 4  
6FN F32   C2    SING N N 5  
6FN C2    N3    DOUB Y N 6  
6FN C5    N7    SING Y N 7  
6FN C5    C4    DOUB Y N 8  
6FN N7    C8    DOUB Y N 9  
6FN N3    C4    SING Y N 10 
6FN C4    N9    SING Y N 11 
6FN C8    N9    SING Y N 12 
6FN N9    "C1'" SING N N 13 
6FN O2A   PA    DOUB N N 14 
6FN O3G   PG    DOUB N N 15 
6FN O3A   PA    SING N N 16 
6FN O3A   PB    SING N N 17 
6FN "C1'" "C2'" SING N N 18 
6FN "C1'" "O4'" SING N N 19 
6FN "C2'" "C3'" SING N N 20 
6FN PA    "O5'" SING N N 21 
6FN PA    O1A   SING N N 22 
6FN "O5'" "C5'" SING N N 23 
6FN O3B   PG    SING N N 24 
6FN O3B   PB    SING N N 25 
6FN "O4'" "C4'" SING N N 26 
6FN PG    O1G   SING N N 27 
6FN PG    O2G   SING N N 28 
6FN "C3'" "C4'" SING N N 29 
6FN "C3'" "O3'" SING N N 30 
6FN PB    O1B   DOUB N N 31 
6FN PB    O2B   SING N N 32 
6FN "C4'" "C5'" SING N N 33 
6FN "C4'" C33   SING N N 34 
6FN C33   C34   TRIP N N 35 
6FN N6    H1    SING N N 36 
6FN N6    H2    SING N N 37 
6FN C8    H3    SING N N 38 
6FN "C1'" H4    SING N N 39 
6FN "C2'" H5    SING N N 40 
6FN "C2'" H6    SING N N 41 
6FN "C3'" H7    SING N N 42 
6FN "O3'" H8    SING N N 43 
6FN C34   H9    SING N N 44 
6FN "C5'" H10   SING N N 45 
6FN "C5'" H11   SING N N 46 
6FN O2G   H12   SING N N 47 
6FN O1G   H13   SING N N 48 
6FN O2B   H14   SING N N 49 
6FN O1A   H15   SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6FN SMILES           ACDLabs              12.01 "c21n(cnc1c(nc(n2)F)N)C3CC(C(COP(O)(OP(=O)(O)OP(O)(O)=O)=O)(C#C)O3)O"                                                                                                                                       
6FN InChI            InChI                1.03  "InChI=1S/C12H15FN5O12P3/c1-2-12(4-27-32(23,24)30-33(25,26)29-31(20,21)22)6(19)3-7(28-12)18-5-15-8-9(14)16-11(13)17-10(8)18/h1,5-7,19H,3-4H2,(H,23,24)(H,25,26)(H2,14,16,17)(H2,20,21,22)/t6-,7+,12+/m0/s1" 
6FN InChIKey         InChI                1.03  BUMPFXRZUYYODO-QRPMWFLTSA-N                                                                                                                                                                                 
6FN SMILES_CANONICAL CACTVS               3.385 "Nc1nc(F)nc2n(cnc12)[C@H]3C[C@H](O)[C@@](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)(O3)C#C"                                                                                                                       
6FN SMILES           CACTVS               3.385 "Nc1nc(F)nc2n(cnc12)[CH]3C[CH](O)[C](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)(O3)C#C"                                                                                                                           
6FN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C#C[C@]1([C@H](C[C@@H](O1)n2cnc3c2nc(nc3N)F)O)COP(=O)(O)OP(=O)(O)OP(=O)(O)O"                                                                                                                               
6FN SMILES           "OpenEye OEToolkits" 2.0.4 "C#CC1(C(CC(O1)n2cnc3c2nc(nc3N)F)O)COP(=O)(O)OP(=O)(O)OP(=O)(O)O"                                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6FN "SYSTEMATIC NAME" ACDLabs              12.01 
;2'-deoxy-4'-ethynyl-2-fluoroadenosine 5'-(tetrahydrogen triphosphate)
;
6FN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[[(2~{R},3~{S},5~{R})-5-(6-azanyl-2-fluoranyl-purin-9-yl)-2-ethynyl-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6FN "Create component" 2016-03-30 RCSB 
6FN "Initial release"  2016-08-03 RCSB 
# 
