data_9WN
#

_chem_comp.id                                   9WN
_chem_comp.name                                 "(2R)-2-(alpha-D-glucopyranosyloxy)-3-hydroxypropanoic acid"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C9 H16 O9"
_chem_comp.mon_nstd_parent_comp_id              GLC
_chem_comp.pdbx_synonyms                        
;(2~{R})-2-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-propanoic
acid; (2R)-2-(alpha-D-glucosyloxy)-3-hydroxypropanoic acid; (2R)-2-(D-glucosyloxy)-3-hydroxypropanoic acid;
(2R)-2-(glucosyloxy)-3-hydroxypropanoic acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-07-20
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       268.218
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9WN
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5OIW
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  9WN  
;(2~{R})-2-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-propanoic
acid
;
  PDB  ?  
2  9WN  "(2R)-2-(alpha-D-glucosyloxy)-3-hydroxypropanoic acid"  PDB  ?  
3  9WN  "(2R)-2-(D-glucosyloxy)-3-hydroxypropanoic acid"  PDB  ?  
4  9WN  "(2R)-2-(glucosyloxy)-3-hydroxypropanoic acid"  PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9WN  C10  C10  C  0  1  N  N  N  33.501  22.913  32.686  -2.194  -1.271  -1.370  C10  9WN   1  
9WN  C6   C01  C  0  1  N  N  N  35.732  18.464  35.416   2.331  -2.383   0.500  C6   9WN   2  
9WN  C5   C02  C  0  1  N  N  R  35.148  19.900  35.566   1.608  -1.083   0.143  C5   9WN   3  
9WN  C4   C03  C  0  1  N  N  S  35.627  20.515  36.877   2.637   0.025  -0.096  C4   9WN   4  
9WN  C3   C04  C  0  1  N  N  S  34.807  21.719  37.203   1.903   1.336  -0.394  C3   9WN   5  
9WN  C2   C05  C  0  1  N  N  R  33.360  21.408  37.219   0.962   1.658   0.771  C2   9WN   6  
9WN  C1   C06  C  0  1  N  N  R  32.915  20.929  35.832  -0.002   0.487   0.976  C1   9WN   7  
9WN  C09  C09  C  0  1  N  N  R  32.932  21.711  33.471  -1.888  -0.597  -0.031  C09  9WN   8  
9WN  C12  C12  C  0  1  N  N  N  31.480  21.479  32.997  -3.107   0.148   0.447  C12  9WN   9  
9WN  O5   O07  O  0  1  N  N  N  33.700  19.761  35.463   0.745  -0.707   1.218  O5   9WN  10  
9WN  O1   O08  O  0  1  N  N  N  33.078  21.958  34.852  -0.803   0.319  -0.195  O1   9WN  11  
9WN  O11  O11  O  0  1  N  N  N  34.889  22.992  32.848  -2.664  -0.292  -2.299  O11  9WN  12  
9WN  O13  O13  O  0  1  N  N  N  30.488  21.626  33.757  -4.223  -0.525   0.768  O13  9WN  13  
9WN  O14  O14  O  0  1  N  N  N  31.280  21.161  31.790  -3.080   1.353   0.542  O14  9WN  14  
9WN  O2   O15  O  0  1  N  N  N  32.567  22.526  37.557   0.219   2.842   0.471  O2   9WN  15  
9WN  O3   O16  O  0  1  N  N  N  35.226  22.285  38.419   2.855   2.392  -0.546  O3   9WN  16  
9WN  O4   O17  O  0  1  N  N  N  36.975  20.883  36.660   3.464  -0.323  -1.208  O4   9WN  17  
9WN  O6   O18  O  0  1  N  N  N  35.355  17.703  36.524   1.380  -3.444   0.609  O6   9WN  18  
9WN  H1A  H1   H  0  1  N  N  N  33.040  23.840  33.059  -1.288  -1.735  -1.758  H1A  9WN  19  
9WN  H2A  H2   H  0  1  N  N  N  33.268  22.791  31.618  -2.961  -2.033  -1.226  H2A  9WN  20  
9WN  H61  H3   H  0  1  N  N  N  35.340  18.000  34.499   3.055  -2.622  -0.279  H61  9WN  21  
9WN  H62  H4   H  0  1  N  N  N  36.829  18.516  35.360   2.849  -2.261   1.451  H62  9WN  22  
9WN  H5   H5   H  0  1  N  N  N  35.520  20.513  34.732   1.018  -1.232  -0.762  H5   9WN  23  
9WN  H4   H6   H  0  1  N  N  N  35.543  19.773  37.684   3.254   0.147   0.794  H4   9WN  24  
9WN  H3   H7   H  0  1  N  N  N  34.976  22.454  36.403   1.325   1.230  -1.312  H3   9WN  25  
9WN  H2   H8   H  0  1  N  N  N  33.180  20.594  37.936   1.546   1.814   1.678  H2   9WN  26  
9WN  H1   H9   H  0  1  N  N  N  31.854  20.645  35.893  -0.646   0.692   1.831  H1   9WN  27  
9WN  H10  H10  H  0  1  N  N  N  33.519  20.823  33.194  -1.615  -1.355   0.703  H10  9WN  28  
9WN  H11  H11  H  0  1  N  N  N  35.223  23.735  32.360  -2.878  -0.649  -3.171  H11  9WN  29  
9WN  H12  H12  H  0  1  N  N  N  29.689  21.463  33.270  -4.979  -0.004   1.069  H12  9WN  30  
9WN  HO2  H13  H  0  1  N  Y  N  32.820  22.847  38.415  -0.398   3.105   1.167  HO2  9WN  31  
9WN  HO3  H14  H  0  1  N  Y  N  34.696  23.049  38.613   2.459   3.253  -0.737  HO3  9WN  32  
9WN  HO4  H15  H  0  1  N  Y  N  37.328  21.275  37.450   4.140   0.336  -1.417  HO4  9WN  33  
9WN  HO6  H16  H  0  1  N  Y  N  35.707  16.825  36.440   1.769  -4.300   0.834  HO6  9WN  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9WN  O14  C12  DOUB  N  N   1  
9WN  C10  O11  SING  N  N   2  
9WN  C10  C09  SING  N  N   3  
9WN  C12  C09  SING  N  N   4  
9WN  C12  O13  SING  N  N   5  
9WN  C09  O1   SING  N  N   6  
9WN  O1   C1   SING  N  N   7  
9WN  C6   C5   SING  N  N   8  
9WN  C6   O6   SING  N  N   9  
9WN  O5   C5   SING  N  N  10  
9WN  O5   C1   SING  N  N  11  
9WN  C5   C4   SING  N  N  12  
9WN  C1   C2   SING  N  N  13  
9WN  O4   C4   SING  N  N  14  
9WN  C4   C3   SING  N  N  15  
9WN  C3   C2   SING  N  N  16  
9WN  C3   O3   SING  N  N  17  
9WN  C2   O2   SING  N  N  18  
9WN  C10  H1A  SING  N  N  19  
9WN  C10  H2A  SING  N  N  20  
9WN  C6   H61  SING  N  N  21  
9WN  C6   H62  SING  N  N  22  
9WN  C5   H5   SING  N  N  23  
9WN  C4   H4   SING  N  N  24  
9WN  C3   H3   SING  N  N  25  
9WN  C2   H2   SING  N  N  26  
9WN  C1   H1   SING  N  N  27  
9WN  C09  H10  SING  N  N  28  
9WN  O11  H11  SING  N  N  29  
9WN  O13  H12  SING  N  N  30  
9WN  O2   HO2  SING  N  N  31  
9WN  O3   HO3  SING  N  N  32  
9WN  O4   HO4  SING  N  N  33  
9WN  O6   HO6  SING  N  N  34  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9WN  InChI             InChI                 1.03   "InChI=1S/C9H16O9/c10-1-3-5(12)6(13)7(14)9(17-3)18-4(2-11)8(15)16/h3-7,9-14H,1-2H2,(H,15,16)/t3-,4-,5-,6+,7-,9-/m1/s1"  
9WN  InChIKey          InChI                 1.03   DDXCFDOPXBPUJC-CECBSOHTSA-N  
9WN  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@H](O[C@H](CO)C(O)=O)[C@H](O)[C@@H](O)[C@@H]1O"  
9WN  SMILES            CACTVS                3.385  "OC[CH]1O[CH](O[CH](CO)C(O)=O)[CH](O)[CH](O)[CH]1O"  
9WN  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O[C@H](CO)C(=O)O)O)O)O)O"  
9WN  SMILES            "OpenEye OEToolkits"  2.0.6  "C(C1C(C(C(C(O1)OC(CO)C(=O)O)O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          9WN
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       
;(2~{R})-2-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-propanoic
acid
;

#
_pdbx_chem_comp_related.comp_id            9WN
_pdbx_chem_comp_related.related_comp_id    GLC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  9WN  C6   GLC  C6   "Carbohydrate core"  
 2  9WN  C5   GLC  C5   "Carbohydrate core"  
 3  9WN  C4   GLC  C4   "Carbohydrate core"  
 4  9WN  C3   GLC  C3   "Carbohydrate core"  
 5  9WN  C2   GLC  C2   "Carbohydrate core"  
 6  9WN  C1   GLC  C1   "Carbohydrate core"  
 7  9WN  O5   GLC  O5   "Carbohydrate core"  
 8  9WN  O1   GLC  O1   "Carbohydrate core"  
 9  9WN  O2   GLC  O2   "Carbohydrate core"  
10  9WN  O3   GLC  O3   "Carbohydrate core"  
11  9WN  O4   GLC  O4   "Carbohydrate core"  
12  9WN  O6   GLC  O6   "Carbohydrate core"  
13  9WN  HO2  GLC  HO2  "Carbohydrate core"  
14  9WN  HO3  GLC  HO3  "Carbohydrate core"  
15  9WN  HO4  GLC  HO4  "Carbohydrate core"  
16  9WN  HO6  GLC  HO6  "Carbohydrate core"  
17  9WN  H61  GLC  H61  "Carbohydrate core"  
18  9WN  H62  GLC  H62  "Carbohydrate core"  
19  9WN  H5   GLC  H5   "Carbohydrate core"  
20  9WN  H4   GLC  H4   "Carbohydrate core"  
21  9WN  H3   GLC  H3   "Carbohydrate core"  
22  9WN  H2   GLC  H2   "Carbohydrate core"  
23  9WN  H1   GLC  H1   "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
9WN  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
9WN  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
9WN  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
9WN  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9WN  "Create component"          2017-07-20  EBI   
9WN  "Initial release"           2018-08-08  RCSB  
9WN  "Other modification"        2020-07-03  RCSB  
9WN  "Modify parent residue"     2020-07-17  RCSB  
9WN  "Modify name"               2020-07-17  RCSB  
9WN  "Modify synonyms"           2020-07-17  RCSB  
9WN  "Modify internal type"      2020-07-17  RCSB  
9WN  "Modify linking type"       2020-07-17  RCSB  
9WN  "Modify atom id"            2020-07-17  RCSB  
9WN  "Modify component atom id"  2020-07-17  RCSB  
9WN  "Modify leaving atom flag"  2020-07-17  RCSB  
##
