data_AMN
#

_chem_comp.id                                   AMN
_chem_comp.name                                 "methyl 5-acetamido-9-amino-3,5,9-trideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C12 H22 N2 O8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;9-DEOXY-9-AMINO-2-O-METHYL-5-N-ACETYL-ALPHA-D-NEURAMINIC ACID; methyl
5-acetamido-9-amino-3,5,9-trideoxy-D-glycero-alpha-D-galacto-non-2-ulosidonic acid; methyl
5-acetamido-9-amino-3,5,9-trideoxy-D-glycero-D-galacto-non-2-ulosidonic acid; methyl
5-acetamido-9-amino-3,5,9-trideoxy-D-glycero-galacto-non-2-ulosidonic acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       322.312
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    AMN
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  AMN  "9-DEOXY-9-AMINO-2-O-METHYL-5-N-ACETYL-ALPHA-D-NEURAMINIC ACID"                              PDB  ?  
2  AMN  "methyl 5-acetamido-9-amino-3,5,9-trideoxy-D-glycero-alpha-D-galacto-non-2-ulosidonic acid"  PDB  ?  
3  AMN  "methyl 5-acetamido-9-amino-3,5,9-trideoxy-D-glycero-D-galacto-non-2-ulosidonic acid"        PDB  ?  
4  AMN  "methyl 5-acetamido-9-amino-3,5,9-trideoxy-D-glycero-galacto-non-2-ulosidonic acid"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AMN  C1    C1    C  0  1  N  N  N   -7.626  72.368  28.804   2.238  -0.993   0.545  C1    AMN   1  
AMN  C2    C2    C  0  1  N  N  R   -8.263  73.676  28.284   2.047   0.483   0.316  C2    AMN   2  
AMN  C3    C3    C  0  1  N  N  N   -8.070  74.811  29.320   2.187   0.789  -1.176  C3    AMN   3  
AMN  C4    C4    C  0  1  N  N  S   -6.627  75.297  29.375   1.142  -0.020  -1.952  C4    AMN   4  
AMN  C5    C5    C  0  1  N  N  R   -6.193  75.722  27.949  -0.240   0.264  -1.355  C5    AMN   5  
AMN  C6    C6    C  0  1  N  N  R   -6.340  74.517  27.018  -0.197  -0.001   0.150  C6    AMN   6  
AMN  C7    C7    C  0  1  N  N  R   -5.979  74.675  25.545  -1.581   0.248   0.751  C7    AMN   7  
AMN  C8    C8    C  0  1  N  N  R   -6.419  73.436  24.748  -1.539  -0.016   2.257  C8    AMN   8  
AMN  C9    C9    C  0  1  N  N  N   -6.019  73.548  23.283  -2.924   0.233   2.858  C9    AMN   9  
AMN  C10   C10   C  0  1  N  N  N   -4.342  77.220  27.408  -1.881  -0.209  -3.093  C10   AMN  10  
AMN  C11   C11   C  0  1  N  N  N   -2.915  77.660  27.703  -2.903  -1.110  -3.737  C11   AMN  11  
AMN  C12   C12   C  0  1  N  N  N   -9.992  72.418  27.115   2.818   0.933   2.429  C12   AMN  12  
AMN  N5    N5    N  0  1  N  N  N   -4.815  76.166  28.056  -1.234  -0.611  -1.981  N5    AMN  13  
AMN  N9    N9    N  0  1  N  N  N   -6.210  72.169  22.775  -2.884  -0.021   4.304  N9    AMN  14  
AMN  O1A   O1A   O  0  1  N  N  N   -7.853  72.031  29.960   1.584  -1.564   1.385  O1A   AMN  15  
AMN  O1B   O1B   O  0  1  N  N  N   -6.896  71.675  28.082   3.136  -1.675  -0.184  O1B   AMN  16  
AMN  O2    O2    O  0  1  N  N  N   -9.663  73.430  28.086   3.039   1.209   1.045  O2    AMN  17  
AMN  O4    O4    O  0  1  N  N  N   -6.427  76.369  30.305   1.162   0.365  -3.328  O4    AMN  18  
AMN  O6    O6    O  0  1  N  N  N   -7.687  74.081  27.033   0.750   0.867   0.768  O6    AMN  19  
AMN  O7    O7    O  0  1  N  N  N   -6.631  75.809  25.020  -1.964   1.605   0.517  O7    AMN  20  
AMN  O8    O8    O  0  1  N  N  N   -5.888  72.238  25.244  -1.157  -1.373   2.491  O8    AMN  21  
AMN  O10   O10   O  0  1  N  N  N   -5.029  77.779  26.558  -1.641   0.877  -3.575  O10   AMN  22  
AMN  H32   H31   H  0  1  N  N  N   -8.773  75.654  29.130   2.025   1.853  -1.348  H32   AMN  23  
AMN  H31   H32   H  0  1  N  N  N   -8.431  74.503  30.328   3.186   0.512  -1.513  H31   AMN  24  
AMN  H4    H4    H  0  1  N  N  N   -5.995  74.455  29.742   1.366  -1.083  -1.867  H4    AMN  25  
AMN  H5    H5    H  0  1  N  N  N   -6.817  76.545  27.529  -0.507   1.305  -1.534  H5    AMN  26  
AMN  H6    H6    H  0  1  N  N  N   -5.589  73.808  27.439   0.092  -1.037   0.327  H6    AMN  27  
AMN  H7    H7    H  0  1  N  N  N   -4.873  74.792  25.460  -2.306  -0.418   0.284  H7    AMN  28  
AMN  H8    H8    H  0  1  N  N  N   -7.528  73.406  24.855  -0.815   0.650   2.724  H8    AMN  29  
AMN  H92   H91   H  0  1  N  N  N   -6.566  74.333  22.711  -3.216   1.268   2.679  H92   AMN  30  
AMN  H91   H92   H  0  1  N  N  N   -5.001  73.969  23.110  -3.649  -0.433   2.391  H91   AMN  31  
AMN  H111  H111  H  0  0  N  N  N   -2.516  78.547  27.157  -3.317  -0.618  -4.617  H111  AMN  32  
AMN  H113  H112  H  0  0  N  N  N   -2.803  77.825  28.800  -2.429  -2.045  -4.032  H113  AMN  33  
AMN  H112  H113  H  0  0  N  N  N   -2.227  76.796  27.547  -3.704  -1.317  -3.026  H112  AMN  34  
AMN  H121  H121  H  0  0  N  N  N  -11.079  72.226  26.961   3.489   1.544   3.033  H121  AMN  35  
AMN  H122  H122  H  0  0  N  N  N   -9.507  72.656  26.139   1.785   1.167   2.686  H122  AMN  36  
AMN  H123  H123  H  0  0  N  N  N   -9.471  71.465  27.369   3.012  -0.120   2.625  H123  AMN  37  
AMN  HN5   HN5   H  0  1  N  N  N   -4.119  75.697  28.636  -1.426  -1.480  -1.595  HN5   AMN  38  
AMN  HN91  HN91  H  0  0  N  N  N   -5.942  72.244  21.793  -3.813   0.155   4.655  HN91  AMN  39  
AMN  HN92  HN92  H  0  0  N  N  N   -7.141  71.783  22.932  -2.713  -1.009   4.420  HN92  AMN  40  
AMN  HO1B  HOB1  H  0  0  N  N  N   -6.504  70.870  28.401   3.258  -2.623  -0.037  HO1B  AMN  41  
AMN  HO4   HO4   H  0  1  N  Y  N   -5.527  76.672  30.339   2.052   0.179  -3.658  HO4   AMN  42  
AMN  HO7   HO7   H  0  1  N  Y  N   -6.406  75.907  24.102  -1.298   2.161   0.945  HO7   AMN  43  
AMN  HO8   HO8   H  0  1  N  Y  N   -6.159  71.472  24.751  -1.822  -1.929   2.063  HO8   AMN  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AMN  C1   C2    SING  N  N   1  
AMN  C1   O1A   DOUB  N  N   2  
AMN  C1   O1B   SING  N  N   3  
AMN  C2   C3    SING  N  N   4  
AMN  C2   O2    SING  N  N   5  
AMN  C2   O6    SING  N  N   6  
AMN  C3   C4    SING  N  N   7  
AMN  C3   H32   SING  N  N   8  
AMN  C3   H31   SING  N  N   9  
AMN  C4   C5    SING  N  N  10  
AMN  C4   O4    SING  N  N  11  
AMN  C4   H4    SING  N  N  12  
AMN  C5   C6    SING  N  N  13  
AMN  C5   N5    SING  N  N  14  
AMN  C5   H5    SING  N  N  15  
AMN  C6   C7    SING  N  N  16  
AMN  C6   O6    SING  N  N  17  
AMN  C6   H6    SING  N  N  18  
AMN  C7   C8    SING  N  N  19  
AMN  C7   O7    SING  N  N  20  
AMN  C7   H7    SING  N  N  21  
AMN  C8   C9    SING  N  N  22  
AMN  C8   O8    SING  N  N  23  
AMN  C8   H8    SING  N  N  24  
AMN  C9   N9    SING  N  N  25  
AMN  C9   H92   SING  N  N  26  
AMN  C9   H91   SING  N  N  27  
AMN  C10  C11   SING  N  N  28  
AMN  C10  N5    SING  N  N  29  
AMN  C10  O10   DOUB  N  N  30  
AMN  C11  H111  SING  N  N  31  
AMN  C11  H113  SING  N  N  32  
AMN  C11  H112  SING  N  N  33  
AMN  C12  O2    SING  N  N  34  
AMN  C12  H121  SING  N  N  35  
AMN  C12  H122  SING  N  N  36  
AMN  C12  H123  SING  N  N  37  
AMN  N5   HN5   SING  N  N  38  
AMN  N9   HN91  SING  N  N  39  
AMN  N9   HN92  SING  N  N  40  
AMN  O1B  HO1B  SING  N  N  41  
AMN  O4   HO4   SING  N  N  42  
AMN  O7   HO7   SING  N  N  43  
AMN  O8   HO8   SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AMN  SMILES            ACDLabs               10.04  "O=C(O)C1(OC)OC(C(O)C(O)CN)C(NC(=O)C)C(O)C1"  
AMN  SMILES_CANONICAL  CACTVS                3.341  "CO[C@@]1(C[C@H](O)[C@@H](NC(C)=O)[C@@H](O1)[C@H](O)[C@H](O)CN)C(O)=O"  
AMN  SMILES            CACTVS                3.341  "CO[C]1(C[CH](O)[CH](NC(C)=O)[CH](O1)[CH](O)[CH](O)CN)C(O)=O"  
AMN  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CN)O)O)(C(=O)O)OC)O"  
AMN  SMILES            "OpenEye OEToolkits"  1.5.0  "CC(=O)NC1C(CC(OC1C(C(CN)O)O)(C(=O)O)OC)O"  
AMN  InChI             InChI                 1.03   "InChI=1S/C12H22N2O8/c1-5(15)14-8-6(16)3-12(21-2,11(19)20)22-10(8)9(18)7(17)4-13/h6-10,16-18H,3-4,13H2,1-2H3,(H,14,15)(H,19,20)/t6-,7+,8+,9+,10+,12+/m0/s1"  
AMN  InChIKey          InChI                 1.03   LMLQOZLLZRAPEM-MIDKXNQYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AMN  "SYSTEMATIC NAME"            ACDLabs               10.04  "methyl 5-(acetylamino)-9-amino-3,5,9-trideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid"  
AMN  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.5.0  "(2R,4S,5R,6R)-5-acetamido-6-[(1R,2R)-3-amino-1,2-dihydroxy-propyl]-4-hydroxy-2-methoxy-oxane-2-carboxylic acid"  
AMN  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    "9-deoxy-9-amino-2-O-methyl-5-N-acetyl-a-D-neuraminic acid"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
AMN  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
AMN  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
AMN  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
AMN  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AMN  "Create component"          1999-07-08  RCSB  
AMN  "Modify descriptor"         2011-06-04  RCSB  
AMN  "Other modification"        2020-07-03  RCSB  
AMN  "Modify name"               2020-07-17  RCSB  
AMN  "Modify synonyms"           2020-07-17  RCSB  
AMN  "Modify internal type"      2020-07-17  RCSB  
AMN  "Modify linking type"       2020-07-17  RCSB  
AMN  "Modify atom id"            2020-07-17  RCSB  
AMN  "Modify component atom id"  2020-07-17  RCSB  
AMN  "Modify leaving atom flag"  2020-07-17  RCSB  
##
