data_DN
# 
_chem_comp.id                                    DN 
_chem_comp.name                                  
;UNKNOWN 2'-DEOXYNUCLEOTIDE
;
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C5 H11 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-06-02 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ROB 
_chem_comp.formula_weight                        198.111 
_chem_comp.one_letter_code                       N 
_chem_comp.three_letter_code                     DN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DN OP3    O3P    O 0 1 N Y N 10.761 86.955 65.197 3.370  -0.796 -0.981 OP3    DN 1  
DN P      P      P 0 1 N N N 10.142 87.086 66.531 2.413  -0.007 0.046  P      DN 2  
DN OP1    O1P    O 0 1 N N N 10.847 88.090 67.347 2.557  -0.588 1.400  OP1    DN 3  
DN OP2    O2P    O 0 1 N N N 8.692  87.283 66.512 2.831  1.547  0.082  OP2    DN 4  
DN "O5'"  "O5'"  O 0 1 N N N 10.538 85.720 67.176 0.883  -0.141 -0.436 "O5'"  DN 5  
DN "C5'"  "C5'"  C 0 1 N N N 9.666  84.781 67.791 -0.219 0.363  0.322  "C5'"  DN 6  
DN "C4'"  "C4'"  C 0 1 N N R 10.002 83.443 67.242 -1.525 0.069  -0.419 "C4'"  DN 7  
DN "O4'"  "O4'"  O 0 1 N N N 11.364 83.072 67.508 -1.752 -1.344 -0.462 "O4'"  DN 8  
DN "C3'"  "C3'"  C 0 1 N N S 9.128  82.397 67.841 -2.710 0.711  0.334  "C3'"  DN 9  
DN "O3'"  "O3'"  O 0 1 N N N 8.611  81.562 66.790 -3.110 1.931  -0.292 "O3'"  DN 10 
DN "C2'"  "C2'"  C 0 1 N N N 10.023 81.630 68.762 -3.815 -0.372 0.192  "C2'"  DN 11 
DN "C1'"  "C1'"  C 0 1 N N N 11.479 81.977 68.419 -2.965 -1.667 0.237  "C1'"  DN 12 
DN HOP3   HOP3   H 0 0 N Y N 11.498 87.550 65.130 4.309  -0.758 -0.752 HOP3   DN 13 
DN HOP2   HOP2   H 0 0 N N N 8.468  88.039 67.041 2.761  1.993  -0.773 HOP2   DN 14 
DN "H5'"  "H5'1" H 0 1 N N N 9.806  84.790 68.882 -0.239 -0.120 1.299  "H5'"  DN 15 
DN "H5''" "H5'2" H 0 0 N N N 8.619  85.032 67.567 -0.108 1.439  0.451  "H5''" DN 16 
DN "H4'"  "H4'"  H 0 1 N N N 9.849  83.511 66.155 -1.471 0.466  -1.433 "H4'"  DN 17 
DN "H3'"  "H3'"  H 0 1 N N N 8.263  82.806 68.383 -2.459 0.878  1.381  "H3'"  DN 18 
DN "HO3'" H3T    H 0 0 N Y N 8.052  80.891 67.164 -3.852 2.372  0.144  "HO3'" DN 19 
DN "H2'"  "H2'"  H 0 1 N N N 9.856  80.551 68.633 -4.514 -0.331 1.027  "H2'"  DN 20 
DN "H1'"  "H1'"  H 0 1 N N N 11.997 81.123 67.957 -3.488 -2.480 -0.268 "H1'"  DN 21 
DN "H1'2" "H1'2" H 0 0 N N N 12.046 82.261 69.318 -2.746 -1.940 1.269  "H1'2" DN 22 
DN "H2'2" HO2    H 0 0 N N N 9.809  81.905 69.806 -4.337 -0.277 -0.760 "H2'2" DN 23 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DN OP3   P      SING N N 1  
DN OP3   HOP3   SING N N 2  
DN P     OP1    DOUB N N 3  
DN P     OP2    SING N N 4  
DN P     "O5'"  SING N N 5  
DN OP2   HOP2   SING N N 6  
DN "O5'" "C5'"  SING N N 7  
DN "C5'" "C4'"  SING N N 8  
DN "C5'" "H5'"  SING N N 9  
DN "C5'" "H5''" SING N N 10 
DN "C4'" "O4'"  SING N N 11 
DN "C4'" "C3'"  SING N N 12 
DN "C4'" "H4'"  SING N N 13 
DN "O4'" "C1'"  SING N N 14 
DN "C3'" "O3'"  SING N N 15 
DN "C3'" "C2'"  SING N N 16 
DN "C3'" "H3'"  SING N N 17 
DN "O3'" "HO3'" SING N N 18 
DN "C2'" "H2'2" SING N N 19 
DN "C2'" "C1'"  SING N N 20 
DN "C2'" "H2'"  SING N N 21 
DN "C1'" "H1'"  SING N N 22 
DN "C1'" "H1'2" SING N N 23 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DN SMILES           ACDLabs              12.01 "O=P(OCC1OCCC1O)(O)O"                                                                 
DN SMILES_CANONICAL CACTVS               3.370 "O[C@H]1CCO[C@@H]1CO[P](O)(O)=O"                                                      
DN SMILES           CACTVS               3.370 "O[CH]1CCO[CH]1CO[P](O)(O)=O"                                                         
DN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C1CO[C@@H]([C@H]1O)COP(=O)(O)O"                                                      
DN SMILES           "OpenEye OEToolkits" 1.7.0 "C1COC(C1O)COP(=O)(O)O"                                                               
DN InChI            InChI                1.03  "InChI=1S/C5H11O6P/c6-4-1-2-10-5(4)3-11-12(7,8)9/h4-6H,1-3H2,(H2,7,8,9)/t4-,5+/m0/s1" 
DN InChIKey         InChI                1.03  BVOBPNSQIRMLCA-CRCLSJGQSA-N                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DN "SYSTEMATIC NAME" ACDLabs              12.01 1,4-anhydro-2-deoxy-5-O-phosphono-D-erythro-pentitol        
DN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R,3S)-3-hydroxyoxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DN "Create component"  2010-06-02 RCSB 
DN "Modify descriptor" 2011-06-04 RCSB 
# 
