data_IPN
# 
_chem_comp.id                                    IPN 
_chem_comp.name                                  2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-5-IODOURACIL 
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H14 I N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        397.146 
_chem_comp.one_letter_code                       N 
_chem_comp.three_letter_code                     IPN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1PNN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IPN "C8'"  "C8'"  C 0 1 N N N 16.913 34.917 33.666 1.432  0.701  0.697  "C8'"  IPN 1  
IPN "C7'"  "C7'"  C 0 1 N N N 17.234 33.532 34.208 2.182  -0.267 -0.181 "C7'"  IPN 2  
IPN "O7'"  "O7'"  O 0 1 N N N 16.298 32.855 34.634 1.631  -0.771 -1.137 "O7'"  IPN 3  
IPN "C5'"  "C5'"  C 0 1 N N N 18.759 31.726 34.752 4.095  -0.058 1.314  "C5'"  IPN 4  
IPN "C'"   "C'"   C 0 1 N N N 18.871 31.554 36.261 4.839  1.213  0.995  "C'"   IPN 5  
IPN "O1'"  "O1'"  O 0 1 N N N 18.644 30.462 36.732 4.768  1.693  -0.112 "O1'"  IPN 6  
IPN "O2'"  "O2'"  O 0 1 N Y N 19.221 32.570 37.051 5.580  1.812  1.940  "O2'"  IPN 7  
IPN "N4'"  "N4'"  N 0 1 N N N 18.516 33.095 34.236 3.465  -0.574 0.096  "N4'"  IPN 8  
IPN "C3'"  "C3'"  C 0 1 N N N 19.648 33.913 33.750 4.229  -1.424 -0.820 "C3'"  IPN 9  
IPN "C2'"  "C2'"  C 0 1 N N N 20.341 33.355 32.505 4.059  -2.890 -0.418 "C2'"  IPN 10 
IPN "N1'"  "N1'"  N 1 1 N N N 19.533 33.538 31.318 4.826  -3.742 -1.337 "N1'"  IPN 11 
IPN N1     N1     N 0 1 N N N 15.508 35.361 33.908 0.110  0.960  0.121  N1     IPN 12 
IPN C6     C6     C 0 1 N N N 14.418 35.009 33.107 -0.950 0.171  0.475  C6     IPN 13 
IPN C2     C2     C 0 1 N N N 15.347 36.193 35.025 -0.051 1.976  -0.747 C2     IPN 14 
IPN O2     O2     O 0 1 N N N 16.283 36.531 35.768 0.905  2.665  -1.048 O2     IPN 15 
IPN N3     N3     N 0 1 N N N 14.129 36.641 35.311 -1.253 2.233  -1.296 N3     IPN 16 
IPN C4     C4     C 0 1 N N N 13.022 36.355 34.586 -2.323 1.478  -0.973 C4     IPN 17 
IPN O4     O4     O 0 1 N N N 12.036 36.896 35.038 -3.412 1.713  -1.465 O4     IPN 18 
IPN C5     C5     C 0 1 N N N 13.147 35.478 33.388 -2.168 0.410  -0.057 C5     IPN 19 
IPN I5     I5     I 0 1 N N N 11.792 35.044 32.475 -3.808 -0.784 0.469  I5     IPN 20 
IPN "H8'1" "1H8'" H 0 0 N N N 17.102 34.927 32.586 1.317  0.275  1.693  "H8'1" IPN 21 
IPN "H8'2" "2H8'" H 0 0 N N N 17.623 35.626 34.115 1.989  1.636  0.764  "H8'2" IPN 22 
IPN "H5'1" "1H5'" H 0 0 N N N 18.002 31.032 34.400 3.328  0.148  2.061  "H5'1" IPN 23 
IPN "H5'2" "2H5'" H 0 0 N N N 19.693 31.340 34.361 4.792  -0.799 1.704  "H5'2" IPN 24 
IPN "HO2'" "'HO2" H 0 0 N N N 19.290 32.462 37.992 6.058  2.628  1.735  "HO2'" IPN 25 
IPN "H3'1" "1H3'" H 0 0 N N N 20.392 33.985 34.548 5.284  -1.153 -0.772 "H3'1" IPN 26 
IPN "H3'2" "2H3'" H 0 0 N N N 19.383 34.928 33.472 3.864  -1.281 -1.837 "H3'2" IPN 27 
IPN "H2'1" "1H2'" H 0 0 N N N 20.727 32.335 32.632 3.005  -3.160 -0.466 "H2'1" IPN 28 
IPN "H2'2" "2H2'" H 0 0 N N N 21.222 33.976 32.346 4.425  -3.032 0.599  "H2'2" IPN 29 
IPN "H1'1" "1H1'" H 0 0 N N N 19.574 34.420 30.820 4.714  -4.709 -1.072 "H1'1" IPN 30 
IPN "H1'2" "2H1'" H 0 0 N N N 18.601 33.139 31.436 5.802  -3.491 -1.292 "H1'2" IPN 31 
IPN "H1'3" "3H1'" H 0 0 N N N 19.271 34.516 31.192 4.488  -3.610 -2.279 "H1'3" IPN 32 
IPN H6     H6     H 0 1 N N N 14.609 34.415 32.232 -0.813 -0.640 1.175  H6     IPN 33 
IPN HN3    HN3    H 0 1 N N N 14.055 37.157 36.162 -1.351 2.966  -1.923 HN3    IPN 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IPN "C8'" "C7'"  SING N N 1  
IPN "C8'" N1     SING N N 2  
IPN "C8'" "H8'1" SING N N 3  
IPN "C8'" "H8'2" SING N N 4  
IPN "C7'" "O7'"  DOUB N N 5  
IPN "C7'" "N4'"  SING N N 6  
IPN "C5'" "C'"   SING N N 7  
IPN "C5'" "N4'"  SING N N 8  
IPN "C5'" "H5'1" SING N N 9  
IPN "C5'" "H5'2" SING N N 10 
IPN "C'"  "O1'"  DOUB N N 11 
IPN "C'"  "O2'"  SING N N 12 
IPN "O2'" "HO2'" SING N N 13 
IPN "N4'" "C3'"  SING N N 14 
IPN "C3'" "C2'"  SING N N 15 
IPN "C3'" "H3'1" SING N N 16 
IPN "C3'" "H3'2" SING N N 17 
IPN "C2'" "N1'"  SING N N 18 
IPN "C2'" "H2'1" SING N N 19 
IPN "C2'" "H2'2" SING N N 20 
IPN "N1'" "H1'1" SING N N 21 
IPN "N1'" "H1'2" SING N N 22 
IPN "N1'" "H1'3" SING N N 23 
IPN N1    C6     SING N N 24 
IPN N1    C2     SING N N 25 
IPN C6    C5     DOUB N N 26 
IPN C6    H6     SING N N 27 
IPN C2    O2     DOUB N N 28 
IPN C2    N3     SING N N 29 
IPN N3    C4     SING N N 30 
IPN N3    HN3    SING N N 31 
IPN C4    O4     DOUB N N 32 
IPN C4    C5     SING N N 33 
IPN C5    I5     SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IPN SMILES           ACDLabs              10.04 "O=C(N(CC(=O)O)CC[NH3+])CN1C=C(I)C(=O)NC1=O"                                                                            
IPN SMILES_CANONICAL CACTVS               3.341 "[NH3+]CCN(CC(O)=O)C(=O)CN1C=C(I)C(=O)NC1=O"                                                                            
IPN SMILES           CACTVS               3.341 "[NH3+]CCN(CC(O)=O)C(=O)CN1C=C(I)C(=O)NC1=O"                                                                            
IPN SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=C(C(=O)NC(=O)N1CC(=O)N(CC[NH3+])CC(=O)O)I"                                                                          
IPN SMILES           "OpenEye OEToolkits" 1.5.0 "C1=C(C(=O)NC(=O)N1CC(=O)N(CC[NH3+])CC(=O)O)I"                                                                          
IPN InChI            InChI                1.03  "InChI=1S/C10H13IN4O5/c11-6-3-15(10(20)13-9(6)19)4-7(16)14(2-1-12)5-8(17)18/h3H,1-2,4-5,12H2,(H,17,18)(H,13,19,20)/p+1" 
IPN InChIKey         InChI                1.03  OQZZDVVRGNVUJR-UHFFFAOYSA-O                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
IPN "SYSTEMATIC NAME" ACDLabs              10.04 "2-{(carboxymethyl)[(5-iodo-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)acetyl]amino}ethanaminium" 
IPN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[carboxymethyl-[2-(5-iodo-2,4-dioxo-pyrimidin-1-yl)ethanoyl]amino]ethylazanium"             
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IPN "Create component"    1999-07-08 RCSB 
IPN "Modify linking type" 2011-06-04 RCSB 
IPN "Modify descriptor"   2011-06-04 RCSB 
# 
