data_VWN
# 
_chem_comp.id                                    VWN 
_chem_comp.name                                  "2-[(1-methyl-1H-benzimidazol-2-yl)methyl]-6-morpholin-4-ylpyrimidin-4(3H)-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H19 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-02-20 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        325.365 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VWN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4AJW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VWN C1   C1   C 0 1 N N N -10.046 56.758 8.838  -2.168 -0.078 0.289  C1   VWN 1  
VWN N2   N2   N 0 1 N N N -9.495  55.967 7.797  -2.088 -1.452 0.394  N2   VWN 2  
VWN C3   C3   C 0 1 N N N -8.625  54.832 8.132  -3.131 -2.318 -0.178 C3   VWN 3  
VWN C4   C4   C 0 1 N N N -7.764  54.476 6.948  -2.452 -3.389 -1.038 C4   VWN 4  
VWN O5   O5   O 0 1 N N N -8.547  54.204 5.791  -1.440 -4.040 -0.267 O5   VWN 5  
VWN C6   C6   C 0 1 N N N -9.314  55.353 5.446  -0.383 -3.177 0.159  C6   VWN 6  
VWN C7   C7   C 0 1 N N N -10.253 55.745 6.558  -0.953 -2.094 1.075  C7   VWN 7  
VWN N8   N8   N 0 1 N N N -11.115 57.526 8.493  -1.050 0.660  0.208  N8   VWN 8  
VWN C9   C9   C 0 1 N N N -11.689 58.271 9.441  -1.102 1.960  0.108  C9   VWN 9  
VWN N10  N10  N 0 1 N N N -11.242 58.307 10.765 -2.276 2.622  0.082  N10  VWN 10 
VWN C11  C11  C 0 1 N N N -10.157 57.553 11.175 -3.441 1.945  0.159  C11  VWN 11 
VWN C12  C12  C 0 1 N N N -9.553  56.757 10.152 -3.404 0.548  0.261  C12  VWN 12 
VWN O13  O13  O 0 1 N N N -9.792  57.606 12.358 -4.508 2.539  0.136  O13  VWN 13 
VWN C14  C14  C 0 1 Y N N -12.534 60.207 8.125  1.353  1.792  0.070  C14  VWN 14 
VWN C15  C15  C 0 1 N N N -12.895 59.111 9.070  0.183  2.741  0.021  C15  VWN 15 
VWN N16  N16  N 0 1 Y N N -13.333 60.563 7.032  1.934  1.214  -1.016 N16  VWN 16 
VWN N17  N17  N 0 1 Y N N -11.452 60.942 8.242  1.957  1.409  1.157  N17  VWN 17 
VWN C18  C18  C 0 1 Y N N -11.521 61.843 7.180  2.964  0.555  0.843  C18  VWN 18 
VWN C19  C19  C 0 1 Y N N -12.670 61.626 6.425  2.964  0.418  -0.556 C19  VWN 19 
VWN C20  C20  C 0 1 Y N N -12.978 62.398 5.313  3.899  -0.403 -1.170 C20  VWN 20 
VWN C21  C21  C 0 1 Y N N -12.097 63.416 4.965  4.820  -1.082 -0.401 C21  VWN 21 
VWN C22  C22  C 0 1 Y N N -10.944 63.646 5.710  4.819  -0.950 0.979  C22  VWN 22 
VWN C23  C23  C 0 1 Y N N -10.644 62.864 6.820  3.910  -0.140 1.601  C23  VWN 23 
VWN C24  C24  C 0 1 N N N -14.598 60.006 6.557  1.540  1.403  -2.415 C24  VWN 24 
VWN H12  H12  H 0 1 N N N -8.699  56.142 10.396 -4.316 -0.027 0.321  H12  VWN 25 
VWN H31C H31C H 0 0 N N N -7.982  55.104 8.982  -3.694 -2.794 0.625  H31C VWN 26 
VWN H32C H32C H 0 0 N N N -9.245  53.966 8.405  -3.804 -1.723 -0.796 H32C VWN 27 
VWN H71C H71C H 0 0 N N N -10.986 54.940 6.718  -0.184 -1.352 1.287  H71C VWN 28 
VWN H72C H72C H 0 0 N N N -10.780 56.670 6.282  -1.293 -2.547 2.007  H72C VWN 29 
VWN H41C H41C H 0 0 N N N -7.089  55.317 6.732  -3.193 -4.122 -1.359 H41C VWN 30 
VWN H42C H42C H 0 0 N N N -7.170  53.584 7.195  -2.000 -2.921 -1.913 H42C VWN 31 
VWN H61C H61C H 0 0 N N N -8.631  56.191 5.243  0.365  -3.757 0.699  H61C VWN 32 
VWN H62C H62C H 0 0 N N N -9.902  55.132 4.543  0.077  -2.708 -0.711 H62C VWN 33 
VWN H10  H10  H 0 1 N N N -11.715 58.888 11.427 -2.283 3.589  0.007  H10  VWN 34 
VWN H151 H151 H 0 0 N N N -13.647 58.464 8.595  0.207  3.298  -0.916 H151 VWN 35 
VWN H152 H152 H 0 0 N N N -13.316 59.553 9.985  0.244  3.436  0.858  H152 VWN 36 
VWN H241 H241 H 0 0 N N N -14.926 60.552 5.660  2.090  2.244  -2.837 H241 VWN 37 
VWN H242 H242 H 0 0 N N N -14.460 58.943 6.309  1.767  0.499  -2.981 H242 VWN 38 
VWN H243 H243 H 0 0 N N N -15.360 60.103 7.344  0.470  1.605  -2.467 H243 VWN 39 
VWN H23  H23  H 0 1 N N N -9.747  63.045 7.393  3.921  -0.039 2.676  H23  VWN 40 
VWN H20  H20  H 0 1 N N N -13.873 62.214 4.737  3.904  -0.510 -2.245 H20  VWN 41 
VWN H21  H21  H 0 1 N N N -12.310 64.036 4.106  5.549  -1.722 -0.878 H21  VWN 42 
VWN H22  H22  H 0 1 N N N -10.274 64.442 5.422  5.546  -1.488 1.569  H22  VWN 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VWN C1  N2   SING N N 1  
VWN C1  N8   SING N N 2  
VWN C1  C12  DOUB N N 3  
VWN N2  C3   SING N N 4  
VWN N2  C7   SING N N 5  
VWN C3  C4   SING N N 6  
VWN C4  O5   SING N N 7  
VWN O5  C6   SING N N 8  
VWN C6  C7   SING N N 9  
VWN N8  C9   DOUB N N 10 
VWN C9  N10  SING N N 11 
VWN C9  C15  SING N N 12 
VWN N10 C11  SING N N 13 
VWN C11 C12  SING N N 14 
VWN C11 O13  DOUB N N 15 
VWN C14 C15  SING N N 16 
VWN C14 N16  SING Y N 17 
VWN C14 N17  DOUB Y N 18 
VWN N16 C19  SING Y N 19 
VWN N16 C24  SING N N 20 
VWN N17 C18  SING Y N 21 
VWN C18 C19  SING Y N 22 
VWN C18 C23  DOUB Y N 23 
VWN C19 C20  DOUB Y N 24 
VWN C20 C21  SING Y N 25 
VWN C21 C22  DOUB Y N 26 
VWN C22 C23  SING Y N 27 
VWN C12 H12  SING N N 28 
VWN C3  H31C SING N N 29 
VWN C3  H32C SING N N 30 
VWN C7  H71C SING N N 31 
VWN C7  H72C SING N N 32 
VWN C4  H41C SING N N 33 
VWN C4  H42C SING N N 34 
VWN C6  H61C SING N N 35 
VWN C6  H62C SING N N 36 
VWN N10 H10  SING N N 37 
VWN C15 H151 SING N N 38 
VWN C15 H152 SING N N 39 
VWN C24 H241 SING N N 40 
VWN C24 H242 SING N N 41 
VWN C24 H243 SING N N 42 
VWN C23 H23  SING N N 43 
VWN C20 H20  SING N N 44 
VWN C21 H21  SING N N 45 
VWN C22 H22  SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VWN SMILES           ACDLabs              12.01 "O=C1C=C(N=C(N1)Cc3nc2ccccc2n3C)N4CCOCC4"                                                                                          
VWN InChI            InChI                1.03  "InChI=1S/C17H19N5O2/c1-21-13-5-3-2-4-12(13)18-15(21)10-14-19-16(11-17(23)20-14)22-6-8-24-9-7-22/h2-5,11H,6-10H2,1H3,(H,19,20,23)" 
VWN InChIKey         InChI                1.03  XLESLWHDVUIEMT-UHFFFAOYSA-N                                                                                                        
VWN SMILES_CANONICAL CACTVS               3.385 "Cn1c(CC2=NC(=CC(=O)N2)N3CCOCC3)nc4ccccc14"                                                                                        
VWN SMILES           CACTVS               3.385 "Cn1c(CC2=NC(=CC(=O)N2)N3CCOCC3)nc4ccccc14"                                                                                        
VWN SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "Cn1c2ccccc2nc1CC3=NC(=CC(=O)N3)N4CCOCC4"                                                                                          
VWN SMILES           "OpenEye OEToolkits" 1.9.2 "Cn1c2ccccc2nc1CC3=NC(=CC(=O)N3)N4CCOCC4"                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VWN "SYSTEMATIC NAME" ACDLabs              12.01 "2-[(1-methyl-1H-benzimidazol-2-yl)methyl]-6-(morpholin-4-yl)pyrimidin-4(3H)-one" 
VWN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "2-[(1-methylbenzimidazol-2-yl)methyl]-4-morpholin-4-yl-1H-pyrimidin-6-one"       
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VWN "Create component"  2012-02-20 EBI  
VWN "Modify descriptor" 2014-09-05 RCSB 
# 
