data_ZWN
# 
_chem_comp.id                                    ZWN 
_chem_comp.name                                  "(2S)-5-hydroxy-2-(4-hydroxyphenyl)-4-oxo-3,4-dihydro-2H-1-benzopyran-7-yl 2-O-(6-deoxy-alpha-L-mannopyranosyl)-beta-D-glucopyranoside" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H32 O14" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         Naringin 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-04-13 
_chem_comp.pdbx_modified_date                    2023-09-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        580.535 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZWN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8SFU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZWN O2  O1  O 0 1 N N N 2.080  6.937  18.821 3.548  -0.956 0.462  O2  ZWN 1  
ZWN O3  O2  O 0 1 N N N 0.357  8.913  20.041 6.036  0.222  -0.315 O3  ZWN 2  
ZWN C20 C1  C 0 1 Y N N 9.457  10.502 15.539 -6.844 -0.817 0.887  C20 ZWN 3  
ZWN C21 C2  C 0 1 Y N N 9.817  11.317 14.481 -7.948 -1.449 0.348  C21 ZWN 4  
ZWN C22 C3  C 0 1 Y N N 10.790 10.901 13.593 -8.077 -1.564 -1.028 C22 ZWN 5  
ZWN O11 O3  O 0 1 N N N 11.143 11.701 12.548 -9.162 -2.185 -1.561 O11 ZWN 6  
ZWN C23 C4  C 0 1 Y N N 11.401 9.673  13.770 -7.097 -1.042 -1.861 C23 ZWN 7  
ZWN C24 C5  C 0 1 Y N N 11.036 8.870  14.836 -5.995 -0.411 -1.317 C24 ZWN 8  
ZWN C19 C6  C 0 1 Y N N 10.054 9.269  15.725 -5.869 -0.298 0.055  C19 ZWN 9  
ZWN C16 C7  C 0 1 N N S 9.686  8.407  16.896 -4.669 0.398  0.645  C16 ZWN 10 
ZWN C15 C8  C 0 1 N N N 10.383 7.075  16.950 -4.921 1.912  0.682  C15 ZWN 11 
ZWN C14 C9  C 0 1 N N N 10.037 6.397  18.246 -3.672 2.561  1.253  C14 ZWN 12 
ZWN O9  O4  O 0 1 N N N 10.881 5.766  18.898 -3.735 3.486  2.035  O9  ZWN 13 
ZWN O10 O5  O 0 1 N N N 8.248  8.209  16.940 -3.520 0.129  -0.158 O10 ZWN 14 
ZWN C17 C10 C 0 1 Y N N 7.816  7.464  18.008 -2.369 0.788  0.113  C17 ZWN 15 
ZWN C18 C11 C 0 1 Y N N 6.503  7.637  18.393 -1.158 0.259  -0.295 C18 ZWN 16 
ZWN C13 C12 C 0 1 Y N N 8.664  6.574  18.672 -2.386 2.011  0.809  C13 ZWN 17 
ZWN C12 C13 C 0 1 Y N N 8.120  5.852  19.763 -1.188 2.691  1.074  C12 ZWN 18 
ZWN O8  O6  O 0 1 N N N 8.882  4.977  20.462 -1.205 3.874  1.737  O8  ZWN 19 
ZWN C11 C14 C 0 1 Y N N 6.815  6.021  20.148 0.013  2.146  0.654  C11 ZWN 20 
ZWN C10 C15 C 0 1 Y N N 6.008  6.914  19.464 0.026  0.934  -0.026 C10 ZWN 21 
ZWN O7  O7  O 0 1 N N N 4.698  7.045  19.882 1.208  0.405  -0.431 O7  ZWN 22 
ZWN C9  C16 C 0 1 N N S 3.993  8.210  19.522 2.395  1.106  -0.055 C9  ZWN 23 
ZWN O6  O8  O 0 1 N N N 4.435  9.262  20.352 2.496  2.315  -0.810 O6  ZWN 24 
ZWN C7  C17 C 0 1 N N R 3.754  10.498 20.082 3.640  3.108  -0.492 C7  ZWN 25 
ZWN C8  C18 C 0 1 N N N 4.418  11.554 20.934 3.628  4.384  -1.337 C8  ZWN 26 
ZWN O5  O9  O 0 1 N N N 5.815  11.625 20.677 2.500  5.184  -0.976 O5  ZWN 27 
ZWN C6  C19 C 0 1 N N S 2.274  10.334 20.395 4.912  2.310  -0.791 C6  ZWN 28 
ZWN O4  O10 O 0 1 N N N 1.584  11.537 20.083 6.057  3.081  -0.421 O4  ZWN 29 
ZWN C5  C20 C 0 1 N N S 1.687  9.182  19.603 4.889  1.007  0.013  C5  ZWN 30 
ZWN C4  C21 C 0 1 N N R 2.524  7.916  19.768 3.617  0.227  -0.336 C4  ZWN 31 
ZWN C3  C22 C 0 1 N N S 1.447  5.811  19.367 4.115  -2.111 -0.161 C3  ZWN 32 
ZWN O1  O11 O 0 1 N N N 2.405  4.805  19.664 3.264  -2.547 -1.222 O1  ZWN 33 
ZWN C2  C23 C 0 1 N N S 3.129  4.351  18.500 1.936  -2.875 -0.808 C2  ZWN 34 
ZWN C1  C24 C 0 1 N N N 4.170  3.371  18.984 1.112  -3.298 -2.025 C1  ZWN 35 
ZWN C27 C25 C 0 1 N N R 2.148  3.741  17.509 1.987  -4.026 0.200  C27 ZWN 36 
ZWN O14 O12 O 0 1 N N N 2.844  3.307  16.349 0.666  -4.319 0.658  O14 ZWN 37 
ZWN C26 C26 C 0 1 N N R 1.104  4.776  17.134 2.864  -3.617 1.387  C26 ZWN 38 
ZWN O13 O13 O 0 1 N N N 0.141  4.211  16.244 2.977  -4.712 2.298  O13 ZWN 39 
ZWN C25 C27 C 0 1 N N R 0.411  5.297  18.378 4.254  -3.232 0.873  C25 ZWN 40 
ZWN O12 O14 O 0 1 N N N -0.366 4.272  18.989 4.870  -4.369 0.264  O12 ZWN 41 
ZWN H1  H1  H 0 1 N N N -0.173 9.695  19.943 6.878  0.655  -0.120 H1  ZWN 42 
ZWN H2  H2  H 0 1 N N N 8.697  10.834 16.231 -6.745 -0.723 1.958  H2  ZWN 43 
ZWN H3  H3  H 0 1 N N N 9.339  12.276 14.349 -8.709 -1.855 0.998  H3  ZWN 44 
ZWN H4  H4  H 0 1 N N N 10.631 12.501 12.574 -9.046 -3.136 -1.691 H4  ZWN 45 
ZWN H5  H5  H 0 1 N N N 12.161 9.342  13.078 -7.195 -1.131 -2.932 H5  ZWN 46 
ZWN H6  H6  H 0 1 N N N 11.525 7.917  14.976 -5.232 -0.005 -1.964 H6  ZWN 47 
ZWN H7  H7  H 0 1 N N N 9.974  8.957  17.804 -4.498 0.032  1.658  H7  ZWN 48 
ZWN H8  H8  H 0 1 N N N 10.052 6.451  16.107 -5.104 2.283  -0.326 H8  ZWN 49 
ZWN H9  H9  H 0 1 N N N 11.471 7.225  16.891 -5.777 2.130  1.320  H9  ZWN 50 
ZWN H10 H10 H 0 1 N N N 5.867  8.331  17.863 -1.132 -0.681 -0.826 H10 ZWN 51 
ZWN H11 H11 H 0 1 N N N 9.772  4.997  20.131 -1.137 3.788  2.698  H11 ZWN 52 
ZWN H12 H12 H 0 1 N N N 6.418  5.460  20.981 0.940  2.662  0.855  H12 ZWN 53 
ZWN H13 H13 H 0 1 N N N 4.146  8.453  18.460 2.356  1.344  1.008  H13 ZWN 54 
ZWN H14 H14 H 0 1 N N N 3.867  10.768 19.022 3.617  3.373  0.565  H14 ZWN 55 
ZWN H15 H15 H 0 1 N N N 3.963  12.531 20.712 4.544  4.946  -1.160 H15 ZWN 56 
ZWN H16 H16 H 0 1 N N N 4.261  11.309 21.995 3.562  4.119  -2.393 H16 ZWN 57 
ZWN H17 H17 H 0 1 N N N 6.205  12.296 21.226 2.429  6.010  -1.473 H17 ZWN 58 
ZWN H18 H18 H 0 1 N N N 2.168  10.111 21.467 4.956  2.080  -1.856 H18 ZWN 59 
ZWN H19 H19 H 0 1 N N N 1.956  12.255 20.582 6.133  3.923  -0.890 H19 ZWN 60 
ZWN H20 H20 H 0 1 N N N 1.680  9.457  18.538 4.895  1.235  1.079  H20 ZWN 61 
ZWN H21 H21 H 0 1 N N N 2.400  7.537  20.793 3.635  -0.046 -1.391 H21 ZWN 62 
ZWN H22 H22 H 0 1 N N N 0.922  6.096  20.290 5.098  -1.862 -0.562 H22 ZWN 63 
ZWN H23 H23 H 0 1 N N N 3.635  5.201  18.020 1.475  -2.004 -0.342 H23 ZWN 64 
ZWN H24 H24 H 0 1 N N N 4.844  3.872  19.694 1.514  -4.226 -2.431 H24 ZWN 65 
ZWN H25 H25 H 0 1 N N N 3.674  2.526  19.484 0.075  -3.452 -1.726 H25 ZWN 66 
ZWN H26 H26 H 0 1 N N N 4.751  3.000  18.127 1.158  -2.518 -2.785 H26 ZWN 67 
ZWN H27 H27 H 0 1 N N N 1.645  2.889  17.989 2.411  -4.910 -0.278 H27 ZWN 68 
ZWN H28 H28 H 0 1 N N N 3.495  2.660  16.593 0.055  -4.582 -0.044 H28 ZWN 69 
ZWN H29 H29 H 0 1 N N N 1.612  5.618  16.641 2.414  -2.763 1.895  H29 ZWN 70 
ZWN H30 H30 H 0 1 N N N -0.506 4.869  16.018 3.520  -4.522 3.076  H30 ZWN 71 
ZWN H31 H31 H 0 1 N N N -0.240 6.135  18.090 4.868  -2.887 1.705  H31 ZWN 72 
ZWN H32 H32 H 0 1 N N N -0.792 4.617  19.765 5.755  -4.197 -0.084 H32 ZWN 73 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZWN O11 C22 SING N N 1  
ZWN C22 C23 DOUB Y N 2  
ZWN C22 C21 SING Y N 3  
ZWN C23 C24 SING Y N 4  
ZWN C21 C20 DOUB Y N 5  
ZWN C24 C19 DOUB Y N 6  
ZWN C20 C19 SING Y N 7  
ZWN C19 C16 SING N N 8  
ZWN O13 C26 SING N N 9  
ZWN O14 C27 SING N N 10 
ZWN C16 O10 SING N N 11 
ZWN C16 C15 SING N N 12 
ZWN O10 C17 SING N N 13 
ZWN C15 C14 SING N N 14 
ZWN C26 C27 SING N N 15 
ZWN C26 C25 SING N N 16 
ZWN C27 C2  SING N N 17 
ZWN C17 C18 DOUB Y N 18 
ZWN C17 C13 SING Y N 19 
ZWN C14 C13 SING N N 20 
ZWN C14 O9  DOUB N N 21 
ZWN C25 O12 SING N N 22 
ZWN C25 C3  SING N N 23 
ZWN C18 C10 SING Y N 24 
ZWN C2  C1  SING N N 25 
ZWN C2  O1  SING N N 26 
ZWN C13 C12 DOUB Y N 27 
ZWN O2  C3  SING N N 28 
ZWN O2  C4  SING N N 29 
ZWN C3  O1  SING N N 30 
ZWN C10 O7  SING N N 31 
ZWN C10 C11 DOUB Y N 32 
ZWN C9  C4  SING N N 33 
ZWN C9  O7  SING N N 34 
ZWN C9  O6  SING N N 35 
ZWN C5  C4  SING N N 36 
ZWN C5  O3  SING N N 37 
ZWN C5  C6  SING N N 38 
ZWN C12 C11 SING Y N 39 
ZWN C12 O8  SING N N 40 
ZWN C7  O6  SING N N 41 
ZWN C7  C6  SING N N 42 
ZWN C7  C8  SING N N 43 
ZWN O4  C6  SING N N 44 
ZWN O5  C8  SING N N 45 
ZWN O3  H1  SING N N 46 
ZWN C20 H2  SING N N 47 
ZWN C21 H3  SING N N 48 
ZWN O11 H4  SING N N 49 
ZWN C23 H5  SING N N 50 
ZWN C24 H6  SING N N 51 
ZWN C16 H7  SING N N 52 
ZWN C15 H8  SING N N 53 
ZWN C15 H9  SING N N 54 
ZWN C18 H10 SING N N 55 
ZWN O8  H11 SING N N 56 
ZWN C11 H12 SING N N 57 
ZWN C9  H13 SING N N 58 
ZWN C7  H14 SING N N 59 
ZWN C8  H15 SING N N 60 
ZWN C8  H16 SING N N 61 
ZWN O5  H17 SING N N 62 
ZWN C6  H18 SING N N 63 
ZWN O4  H19 SING N N 64 
ZWN C5  H20 SING N N 65 
ZWN C4  H21 SING N N 66 
ZWN C3  H22 SING N N 67 
ZWN C2  H23 SING N N 68 
ZWN C1  H24 SING N N 69 
ZWN C1  H25 SING N N 70 
ZWN C1  H26 SING N N 71 
ZWN C27 H27 SING N N 72 
ZWN O14 H28 SING N N 73 
ZWN C26 H29 SING N N 74 
ZWN O13 H30 SING N N 75 
ZWN C25 H31 SING N N 76 
ZWN O12 H32 SING N N 77 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZWN SMILES           ACDLabs              12.01 "Oc1ccc(cc1)C1CC(=O)c2c(O)cc(cc2O1)OC1OC(CO)C(O)C(O)C1OC1OC(C)C(O)C(O)C1O"                                                                                                                                                                     
ZWN InChI            InChI                1.06  "InChI=1S/C27H32O14/c1-10-20(32)22(34)24(36)26(37-10)41-25-23(35)21(33)18(9-28)40-27(25)38-13-6-14(30)19-15(31)8-16(39-17(19)7-13)11-2-4-12(29)5-3-11/h2-7,10,16,18,20-30,32-36H,8-9H2,1H3/t10-,16-,18+,20-,21+,22+,23-,24+,25+,26-,27+/m0/s1" 
ZWN InChIKey         InChI                1.06  DFPMSGMNTNDNHN-ZPHOTFPESA-N                                                                                                                                                                                                                    
ZWN SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1O[C@@H](O[C@@H]2[C@@H](O)[C@H](O)[C@@H](CO)O[C@H]2Oc3cc(O)c4C(=O)C[C@H](Oc4c3)c5ccc(O)cc5)[C@H](O)[C@H](O)[C@H]1O"                                                                                                                    
ZWN SMILES           CACTVS               3.385 "C[CH]1O[CH](O[CH]2[CH](O)[CH](O)[CH](CO)O[CH]2Oc3cc(O)c4C(=O)C[CH](Oc4c3)c5ccc(O)cc5)[CH](O)[CH](O)[CH]1O"                                                                                                                                    
ZWN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@@H]([C@H]([C@H]([C@@H](O1)O[C@@H]2[C@H]([C@@H]([C@H](O[C@H]2Oc3cc(c4c(c3)O[C@@H](CC4=O)c5ccc(cc5)O)O)CO)O)O)O)O)O"                                                                                                                  
ZWN SMILES           "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)OC2C(C(C(OC2Oc3cc(c4c(c3)OC(CC4=O)c5ccc(cc5)O)O)CO)O)O)O)O)O"                                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZWN "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-5-hydroxy-2-(4-hydroxyphenyl)-4-oxo-3,4-dihydro-2H-1-benzopyran-7-yl 2-O-(6-deoxy-alpha-L-mannopyranosyl)-beta-D-glucopyranoside"                                                                                             
ZWN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-7-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3-[(2~{S},3~{R},4~{R},5~{R},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,5-bis(oxidanyl)oxan-2-yl]oxy-2-(4-hydroxyphenyl)-5-oxidanyl-2,3-dihydrochromen-4-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZWN "Create component" 2023-04-13 RCSB 
ZWN "Modify synonyms"  2023-04-13 RCSB 
ZWN "Initial release"  2023-09-13 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      ZWN 
_pdbx_chem_comp_synonyms.name         Naringin 
_pdbx_chem_comp_synonyms.provenance   PUBCHEM 
_pdbx_chem_comp_synonyms.type         ? 
# 
