data_JTO
# 
_chem_comp.id                                    JTO 
_chem_comp.name                                  "[2-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)sulfanyl]phenoxy]methylphosphonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H12 N3 O5 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-09 
_chem_comp.pdbx_modified_date                    2023-05-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        353.290 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JTO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZSL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JTO C2  C1  C 0 1 N N N -18.274 84.607 30.157 -4.911 -0.776 -0.808 C2  JTO 1  
JTO C4  C2  C 0 1 N N N -18.010 86.172 32.013 -4.802 -1.140 1.514  C4  JTO 2  
JTO C6  C3  C 0 1 Y N N -19.827 86.469 30.700 -3.020 -0.062 0.512  C6  JTO 3  
JTO C12 C4  C 0 1 Y N N -20.604 91.731 27.928 2.850  2.677  -0.892 C12 JTO 4  
JTO C13 C5  C 0 1 Y N N -21.732 91.837 28.723 2.628  1.311  -0.878 C13 JTO 5  
JTO C14 C6  C 0 1 Y N N -22.151 90.797 29.572 1.580  0.787  -0.140 C14 JTO 6  
JTO C16 C7  C 0 1 N N N -23.973 92.126 30.440 2.251  -1.366 -0.895 C16 JTO 7  
JTO C21 C8  C 0 1 Y N N -21.345 86.151 28.998 -1.695 0.883  -1.022 C21 JTO 8  
JTO C23 C9  C 0 1 Y N N -19.465 85.344 29.885 -3.648 -0.153 -0.735 C23 JTO 9  
JTO O20 O1  O 0 1 N N N -24.786 91.295 32.867 3.631  -2.166 1.414  O20 JTO 10 
JTO P17 P1  P 0 1 N N N -25.324 91.782 31.461 3.853  -1.496 -0.033 P17 JTO 11 
JTO O18 O2  O 0 1 N N N -26.091 93.087 31.398 4.856  -2.410 -0.900 O18 JTO 12 
JTO O19 O3  O 0 1 N N N -26.266 90.793 30.886 4.435  -0.146 0.132  O19 JTO 13 
JTO O15 O4  O 0 1 N N N -23.271 90.867 30.366 1.361  -0.555 -0.126 O15 JTO 14 
JTO C11 C10 C 0 1 Y N N -19.877 90.516 27.952 2.028  3.522  -0.170 C11 JTO 15 
JTO C10 C11 C 0 1 Y N N -20.320 89.489 28.801 0.980  3.007  0.569  C10 JTO 16 
JTO C9  C12 C 0 1 Y N N -21.456 89.573 29.626 0.751  1.639  0.588  C9  JTO 17 
JTO S8  S1  S 0 1 N N N -22.005 88.276 30.625 -0.585 0.979  1.529  S8  JTO 18 
JTO C7  C13 C 0 1 Y N N -21.062 86.958 30.156 -1.787 0.598  0.298  C7  JTO 19 
JTO N22 N1  N 0 1 Y N N -20.410 85.192 28.858 -2.817 0.433  -1.660 N22 JTO 20 
JTO O1  O5  O 0 1 N N N -17.839 83.622 29.471 -5.494 -0.883 -1.874 O1  JTO 21 
JTO N5  N2  N 0 1 N N N -19.114 86.874 31.781 -3.636 -0.570 1.606  N5  JTO 22 
JTO N3  N3  N 0 1 N N N -17.580 85.071 31.287 -5.458 -1.258 0.330  N3  JTO 23 
JTO H1  H1  H 0 1 N N N -17.392 86.487 32.841 -5.263 -1.534 2.408  H1  JTO 24 
JTO H2  H2  H 0 1 N N N -20.286 92.554 27.305 3.671  3.083  -1.465 H2  JTO 25 
JTO H3  H3  H 0 1 N N N -22.310 92.749 28.690 3.272  0.654  -1.444 H3  JTO 26 
JTO H4  H4  H 0 1 N N N -23.335 92.905 30.883 2.402  -0.913 -1.875 H4  JTO 27 
JTO H5  H5  H 0 1 N N N -24.307 92.448 29.443 1.823  -2.361 -1.017 H5  JTO 28 
JTO H6  H6  H 0 1 N N N -22.187 86.294 28.336 -0.866 1.386  -1.497 H6  JTO 29 
JTO H7  H7  H 0 1 N N N -25.171 90.453 33.080 3.251  -3.055 1.382  H7  JTO 30 
JTO H8  H8  H 0 1 N N N -26.948 92.933 31.018 5.729  -2.523 -0.501 H8  JTO 31 
JTO H9  H9  H 0 1 N N N -19.003 90.382 27.332 2.206  4.587  -0.184 H9  JTO 32 
JTO H10 H10 H 0 1 N N N -19.750 88.572 28.822 0.340  3.670  1.132  H10 JTO 33 
JTO H11 H11 H 0 1 N N N -20.392 84.491 28.145 -2.997 0.514  -2.610 H11 JTO 34 
JTO H12 H12 H 0 1 N N N -16.751 84.593 31.577 -6.326 -1.690 0.301  H12 JTO 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JTO C12 C11 DOUB Y N 1  
JTO C12 C13 SING Y N 2  
JTO C11 C10 SING Y N 3  
JTO C13 C14 DOUB Y N 4  
JTO C10 C9  DOUB Y N 5  
JTO N22 C21 SING Y N 6  
JTO N22 C23 SING Y N 7  
JTO C21 C7  DOUB Y N 8  
JTO O1  C2  DOUB N N 9  
JTO C14 C9  SING Y N 10 
JTO C14 O15 SING N N 11 
JTO C9  S8  SING N N 12 
JTO C23 C2  SING N N 13 
JTO C23 C6  DOUB Y N 14 
JTO C7  S8  SING N N 15 
JTO C7  C6  SING Y N 16 
JTO C2  N3  SING N N 17 
JTO O15 C16 SING N N 18 
JTO C16 P17 SING N N 19 
JTO C6  N5  SING N N 20 
JTO O19 P17 DOUB N N 21 
JTO N3  C4  SING N N 22 
JTO O18 P17 SING N N 23 
JTO P17 O20 SING N N 24 
JTO N5  C4  DOUB N N 25 
JTO C4  H1  SING N N 26 
JTO C12 H2  SING N N 27 
JTO C13 H3  SING N N 28 
JTO C16 H4  SING N N 29 
JTO C16 H5  SING N N 30 
JTO C21 H6  SING N N 31 
JTO O20 H7  SING N N 32 
JTO O18 H8  SING N N 33 
JTO C11 H9  SING N N 34 
JTO C10 H10 SING N N 35 
JTO N22 H11 SING N N 36 
JTO N3  H12 SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JTO InChI            InChI                1.06  "InChI=1S/C13H12N3O5PS/c17-13-12-11(15-6-16-13)10(5-14-12)23-9-4-2-1-3-8(9)21-7-22(18,19)20/h1-6,14H,7H2,(H,15,16,17)(H2,18,19,20)" 
JTO InChIKey         InChI                1.06  VOAJLIGXNWIOPN-UHFFFAOYSA-N                                                                                                         
JTO SMILES_CANONICAL CACTVS               3.385 "O[P](O)(=O)COc1ccccc1Sc2c[nH]c3C(=O)NC=Nc23"                                                                                       
JTO SMILES           CACTVS               3.385 "O[P](O)(=O)COc1ccccc1Sc2c[nH]c3C(=O)NC=Nc23"                                                                                       
JTO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)OCP(=O)(O)O)Sc2c[nH]c3c2N=CNC3=O"                                                                                       
JTO SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)OCP(=O)(O)O)Sc2c[nH]c3c2N=CNC3=O"                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           JTO 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[2-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)sulfanyl]phenoxy]methylphosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JTO "Create component"  2022-05-09 PDBE 
JTO "Modify descriptor" 2022-08-22 RCSB 
JTO "Initial release"   2023-05-17 RCSB 
# 
