data_LSO
# 
_chem_comp.id                                    LSO 
_chem_comp.name                                  "(Z)-N~6~-(3-CARBOXY-1-{[(4-CARBOXY-2-OXOBUTYL)SULFONYL]METHYL}PROPYLIDENE)-L-LYSINE" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C16 H26 N2 O9 S" 
_chem_comp.mon_nstd_parent_comp_id               LYS 
_chem_comp.pdbx_synonyms                         "2-AMINO-6-[3-CARBOXY-2-OXO-BUTANE-1-SULFONYLMETHYL-PROPYLIDENEAMINO]-HEXANOIC ACID" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2005-09-11 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        422.451 
_chem_comp.one_letter_code                       K 
_chem_comp.three_letter_code                     LSO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2C18 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LSO O    O    O 0 1 N N N Y N Y 2.748  116.895 38.430 -2.204  -6.485 -3.242 O    LSO 1  
LSO C    C    C 0 1 N N N Y N Y 2.214  117.641 37.643 -2.195  -5.304 -3.560 C    LSO 2  
LSO CA   CA   C 0 1 N N S Y N N 2.778  119.069 37.691 -2.325  -4.121 -2.622 CA   LSO 3  
LSO N    N    N 0 1 N N N Y Y N 2.703  119.590 39.066 -2.556  -4.631 -1.271 N    LSO 4  
LSO CB   CB   C 0 1 N N N N N N 4.184  119.241 37.142 -1.096  -3.201 -2.674 CB   LSO 5  
LSO CG   CG   C 0 1 N N N N N N 4.234  118.775 35.693 -1.194  -1.955 -1.782 CG   LSO 6  
LSO CD   CD   C 0 1 N N N N N N 5.654  118.960 35.213 0.045   -1.067 -1.940 CD   LSO 7  
LSO CE   CE   C 0 1 N N N N N N 5.646  118.669 33.732 -0.024  0.189  -1.078 CE   LSO 8  
LSO NZ   NZ   N 0 1 N N N N N N 6.981  118.934 33.248 -1.166  0.996  -1.471 NZ   LSO 9  
LSO C4   C4   C 0 1 N N N N N N 7.262  119.206 32.033 -1.378  2.128  -0.889 C4   LSO 10 
LSO C3   C3   C 0 1 N N N N N N 6.121  119.307 31.031 -0.515  2.729  0.211  C3   LSO 11 
LSO C2   C2   C 0 1 N N N N N N 5.869  117.934 30.412 0.523   3.688  -0.371 C2   LSO 12 
LSO C1   C1   C 0 1 N N N N N N 4.679  117.979 29.491 1.385   4.355  0.680  C1   LSO 13 
LSO O2   O2   O 0 1 N N N N N N 4.260  119.082 29.043 2.273   5.215  0.116  O2   LSO 14 
LSO O1   O1   O 0 1 N N N N N N 4.162  116.866 29.218 1.314   4.171  1.887  O1   LSO 15 
LSO C5   C5   C 0 1 N N N N N N 8.694  119.471 31.596 -2.586  2.917  -1.335 C5   LSO 16 
LSO S6   S6   S 0 1 N N N N N N 9.943  118.758 32.474 -3.985  2.499  -0.349 S6   LSO 17 
LSO O6   O6   O 0 1 N N N N N N 9.609  118.660 33.879 -3.737  2.948  1.011  O6   LSO 18 
LSO O5   O5   O 0 1 N N N N N N 11.098 119.618 32.260 -4.335  1.113  -0.615 O5   LSO 19 
LSO C7   C7   C 0 1 N N N N N N 10.312 117.235 31.861 -5.282  3.516  -1.019 C7   LSO 20 
LSO C8   C8   C 0 1 N N N N N N 9.169  116.235 31.874 -6.602  3.317  -0.310 C8   LSO 21 
LSO O7   O7   O 0 1 N N N N N N 8.327  116.290 32.744 -6.739  2.519  0.616  O7   LSO 22 
LSO C9   C9   C 0 1 N N N N N N 9.060  115.152 30.824 -7.752  4.173  -0.825 C9   LSO 23 
LSO C10  C10  C 0 1 N N N N N N 8.354  113.918 31.406 -9.087  3.877  -0.154 C10  LSO 24 
LSO C11  C11  C 0 1 N N N N N N 9.160  113.224 32.508 -10.197 4.705  -0.754 C11  LSO 25 
LSO O3   O3   O 0 1 N N N N N N 8.890  112.038 32.802 -10.033 5.522  -1.650 O3   LSO 26 
LSO O4   O4   O 0 1 N N N N N N 10.074 113.838 33.108 -11.400 4.459  -0.180 O4   LSO 27 
LSO OXT  OXT  O 0 1 N Y N Y N Y ?      ?       ?      -2.078  -4.880 -4.846 OXT  LSO 28 
LSO HA   HA   H 0 1 N N N Y N N 2.140  119.651 37.010 -3.215  -3.556 -2.924 HA   LSO 29 
LSO H    HN1  H 0 1 N N N Y Y N 2.231  120.472 39.063 -3.494  -4.826 -0.999 HN1  LSO 30 
LSO H2   HN2  H 0 1 N Y N Y Y N 3.627  119.708 39.429 -1.808  -4.573 -0.616 HN2  LSO 31 
LSO HBC1 HBC1 H 0 0 N N N N N N 4.884  118.639 37.741 -0.206  -3.774 -2.384 HBC1 LSO 32 
LSO HBC2 HBC2 H 0 0 N N N N N N 4.468  120.302 37.193 -0.933  -2.884 -3.713 HBC2 LSO 33 
LSO HGC1 HGC1 H 0 0 N N N N N N 3.535  119.355 35.073 -2.091  -1.382 -2.041 HGC1 LSO 34 
LSO HGC2 HGC2 H 0 0 N N N N N N 3.944  117.716 35.624 -1.291  -2.255 -0.732 HGC2 LSO 35 
LSO HDC1 HDC1 H 0 0 N N N N N N 6.344  118.289 35.746 0.936   -1.639 -1.654 HDC1 LSO 36 
LSO HDC2 HDC2 H 0 0 N N N N N N 5.993  119.989 35.401 0.165   -0.787 -2.994 HDC2 LSO 37 
LSO HEC1 HEC1 H 0 0 N N N N N N 4.907  119.296 33.212 -0.103  -0.069 -0.016 HEC1 LSO 38 
LSO HEC2 HEC2 H 0 0 N N N N N N 5.374  117.619 33.549 0.888   0.780  -1.213 HEC2 LSO 39 
LSO H3C1 H3C1 H 0 0 N N N N N N 6.388  120.024 30.240 -0.057  1.919  0.788  H3C1 LSO 40 
LSO H3C2 H3C2 H 0 0 N N N N N N 5.211  119.652 31.544 -1.159  3.269  0.912  H3C2 LSO 41 
LSO H2C1 H2C1 H 0 0 N N N N N N 5.668  117.212 31.218 -0.005  4.493  -0.896 H2C1 LSO 42 
LSO H2C2 H2C2 H 0 0 N N N N N N 6.757  117.629 29.838 1.181   3.176  -1.082 H2C2 LSO 43 
LSO H1   H2   H 0 1 N N N N N N 3.509  118.931 28.481 2.858   5.683  0.750  H2   LSO 44 
LSO H5C1 H5C1 H 0 0 N N N N N N 8.833  120.552 31.745 -2.410  3.989  -1.216 H5C1 LSO 45 
LSO H5C2 H5C2 H 0 0 N N N N N N 8.782  119.099 30.565 -2.829  2.704  -2.377 H5C2 LSO 46 
LSO H7C1 H7C1 H 0 0 N N N N N N 11.091 116.820 32.518 -4.963  4.556  -0.917 H7C1 LSO 47 
LSO H7C2 H7C2 H 0 0 N N N N N N 10.627 117.366 30.815 -5.389  3.253  -2.074 H7C2 LSO 48 
LSO H9C1 H9C1 H 0 0 N N N N N N 10.070 114.867 30.496 -7.475  5.226  -0.706 H9C1 LSO 49 
LSO H9C2 H9C2 H 0 0 N N N N N N 8.480  115.532 29.970 -7.842  3.957  -1.896 H9C2 LSO 50 
LSO H101 H101 H 0 0 N N N N N N 8.228  113.195 30.587 -9.356  2.828  -0.329 H101 LSO 51 
LSO H102 H102 H 0 0 N N N N N N 7.393  114.241 31.834 -9.071  4.006  0.933  H102 LSO 52 
LSO H4   H4   H 0 1 N N N N N N 10.467 113.267 33.757 -12.146 4.989  -0.534 H4   LSO 53 
LSO HXT  HXT  H 0 1 N Y N Y N Y -0.420 0.586   -0.618 -2.004  -5.631 -5.473 HXT  LSO 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LSO O   C    DOUB N N 1  
LSO C   CA   SING N N 2  
LSO C   OXT  SING N N 3  
LSO CA  N    SING N N 4  
LSO CA  CB   SING N N 5  
LSO CA  HA   SING N N 6  
LSO N   H    SING N N 7  
LSO N   H2   SING N N 8  
LSO CB  CG   SING N N 9  
LSO CB  HBC1 SING N N 10 
LSO CB  HBC2 SING N N 11 
LSO CG  CD   SING N N 12 
LSO CG  HGC1 SING N N 13 
LSO CG  HGC2 SING N N 14 
LSO CD  CE   SING N N 15 
LSO CD  HDC1 SING N N 16 
LSO CD  HDC2 SING N N 17 
LSO CE  NZ   SING N N 18 
LSO CE  HEC1 SING N N 19 
LSO CE  HEC2 SING N N 20 
LSO NZ  C4   DOUB N E 21 
LSO C4  C3   SING N N 22 
LSO C4  C5   SING N N 23 
LSO C3  C2   SING N N 24 
LSO C3  H3C1 SING N N 25 
LSO C3  H3C2 SING N N 26 
LSO C2  C1   SING N N 27 
LSO C2  H2C1 SING N N 28 
LSO C2  H2C2 SING N N 29 
LSO C1  O2   SING N N 30 
LSO C1  O1   DOUB N N 31 
LSO O2  H1   SING N N 32 
LSO C5  S6   SING N N 33 
LSO C5  H5C1 SING N N 34 
LSO C5  H5C2 SING N N 35 
LSO S6  O6   DOUB N N 36 
LSO S6  O5   DOUB N N 37 
LSO S6  C7   SING N N 38 
LSO C7  C8   SING N N 39 
LSO C7  H7C1 SING N N 40 
LSO C7  H7C2 SING N N 41 
LSO C8  O7   DOUB N N 42 
LSO C8  C9   SING N N 43 
LSO C9  C10  SING N N 44 
LSO C9  H9C1 SING N N 45 
LSO C9  H9C2 SING N N 46 
LSO C10 C11  SING N N 47 
LSO C10 H101 SING N N 48 
LSO C10 H102 SING N N 49 
LSO C11 O3   DOUB N N 50 
LSO C11 O4   SING N N 51 
LSO O4  H4   SING N N 52 
LSO OXT HXT  SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LSO SMILES           ACDLabs              10.04 "O=S(=O)(C/C(=N/CCCCC(C(=O)O)N)CCC(=O)O)CC(=O)CCC(=O)O"                                                                                                          
LSO SMILES_CANONICAL CACTVS               3.341 "N[C@@H](CCCCN=C(CCC(O)=O)C[S](=O)(=O)CC(=O)CCC(O)=O)C(O)=O"                                                                                                     
LSO SMILES           CACTVS               3.341 "N[CH](CCCCN=C(CCC(O)=O)C[S](=O)(=O)CC(=O)CCC(O)=O)C(O)=O"                                                                                                       
LSO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(CC/N=C(\CCC(=O)O)/CS(=O)(=O)CC(=O)CCC(=O)O)C[C@@H](C(=O)O)N"                                                                                                  
LSO SMILES           "OpenEye OEToolkits" 1.5.0 "C(CCN=C(CCC(=O)O)CS(=O)(=O)CC(=O)CCC(=O)O)CC(C(=O)O)N"                                                                                                          
LSO InChI            InChI                1.03  "InChI=1S/C16H26N2O9S/c17-13(16(24)25)3-1-2-8-18-11(4-6-14(20)21)9-28(26,27)10-12(19)5-7-15(22)23/h13H,1-10,17H2,(H,20,21)(H,22,23)(H,24,25)/b18-11+/t13-/m0/s1" 
LSO InChIKey         InChI                1.03  VZZTXTHYLVASGB-FHXOWUIVSA-N                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LSO "SYSTEMATIC NAME" ACDLabs              10.04 "(E)-N~6~-(3-carboxy-1-{[(4-carboxy-2-oxobutyl)sulfonyl]methyl}propylidene)-L-lysine"                          
LSO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-6-[[5-hydroxy-1-(5-hydroxy-2,5-dioxo-pentyl)sulfonyl-5-oxo-pentan-2-ylidene]amino]hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LSO "Create component"              2005-09-11 EBI  
LSO "Modify descriptor"             2011-06-04 RCSB 
LSO "Modify parent residue"         2014-01-20 EBI  
LSO "Modify one letter code"        2014-01-20 EBI  
LSO "Modify model coordinates code" 2014-01-20 EBI  
LSO "Modify synonyms"               2014-01-20 EBI  
LSO "Modify synonyms"               2021-03-01 PDBE 
LSO "Modify backbone"               2023-11-03 PDBE 
LSO "Modify PCM"                    2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      LSO 
_pdbx_chem_comp_synonyms.name         "2-AMINO-6-[3-CARBOXY-2-OXO-BUTANE-1-SULFONYLMETHYL-PROPYLIDENEAMINO]-HEXANOIC ACID" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            LSO 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
