data_TYO
# 
_chem_comp.id                                    TYO 
_chem_comp.name                                  "(4Z,6E)-2-AMINO-7-HYDROPEROXY-4-[(E)-2-HYDROXYVINYL]HEPTA-4,6-DIENOIC ACID" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C9 H13 N O5" 
_chem_comp.mon_nstd_parent_comp_id               TYR 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2006-09-22 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        215.203 
_chem_comp.one_letter_code                       Y 
_chem_comp.three_letter_code                     TYO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        "Corina V3.40" 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2HHF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
TYO N    N    N 0 1 N N N Y Y N 29.983 -6.178 22.560 1.340  1.763  1.021  N    TYO 1  
TYO CA   CA   C 0 1 N N S Y N N 28.872 -6.228 21.615 2.060  0.637  0.413  CA   TYO 2  
TYO CB   CB   C 0 1 N N N N N N 27.919 -5.064 21.873 1.320  0.177  -0.844 CB   TYO 3  
TYO CG   CG   C 0 1 N N N N N N 26.503 -5.270 21.346 -0.030 -0.373 -0.460 CG   TYO 4  
TYO CD1  CD1  C 0 1 N N N N N N 25.658 -6.420 21.978 -0.159 -1.770 -0.043 CD1  TYO 5  
TYO CE1  CE1  C 0 1 N N N N N N 24.332 -6.339 22.064 0.923  -2.560 -0.004 CE1  TYO 6  
TYO OE1  OE1  O 0 1 N N N N N N 23.736 -6.032 23.326 0.804  -3.854 0.382  OE1  TYO 7  
TYO CD2  CD2  C 0 1 N N N N N N 26.115 -4.552 20.211 -1.120 0.423  -0.500 CD2  TYO 8  
TYO CE2  CE2  C 0 1 N N N N N N 25.049 -5.041 19.140 -2.430 -0.111 -0.126 CE2  TYO 9  
TYO CZ   CZ   C 0 1 N N N N N N 23.735 -4.955 19.403 -3.512 0.679  -0.166 CZ   TYO 10 
TYO OH   OH   O 0 1 N N N N N N 22.813 -5.613 18.530 -4.725 0.185  0.180  OH   TYO 11 
TYO OH1  OH1  O 0 1 N N N N N N 21.579 -6.230 19.112 -5.817 1.163  0.089  OH1  TYO 12 
TYO C    C    C 0 1 N N N Y N Y 29.443 -6.186 20.198 3.455  1.072  0.044  C    TYO 13 
TYO O    O    O 0 1 N N N Y N Y 30.245 -5.314 19.859 3.708  2.247  -0.081 O    TYO 14 
TYO OXT  OXT  O 0 1 N Y N Y N Y 29.070 -7.189 19.381 4.416  0.155  -0.146 OXT  TYO 15 
TYO H    HN1  H 0 1 N N N Y Y N 30.848 -6.167 22.058 1.277  2.540  0.380  HN1  TYO 16 
TYO H2   HN2  H 0 1 N Y N Y Y N 29.910 -5.351 23.117 0.425  1.480  1.336  HN2  TYO 17 
TYO HA   HA   H 0 1 N N N Y N N 28.297 -7.157 21.740 2.114  -0.187 1.125  HA   TYO 18 
TYO HB1  HB1  H 0 1 N N N N N N 27.854 -4.919 22.961 1.189  1.023  -1.518 HB1  TYO 19 
TYO HB2  HB2  H 0 1 N N N N N N 28.330 -4.197 21.335 1.900  -0.599 -1.344 HB2  TYO 20 
TYO HD1  HD1  H 0 1 N N N N N N 26.159 -7.300 22.353 -1.125 -2.164 0.232  HD1  TYO 21 
TYO HE1  HE1  H 0 1 N N N N N N 23.716 -6.503 21.193 1.890  -2.166 -0.279 HE1  TYO 22 
TYO HOE1 HOE1 H 0 0 N N N N N N 24.413 -5.964 23.988 1.638  -4.344 0.379  HOE1 TYO 23 
TYO HD21 HD21 H 0 0 N N N N N N 26.576 -3.589 20.050 -1.025 1.454  -0.807 HD21 TYO 24 
TYO HE2  HE2  H 0 1 N N N N N N 25.383 -5.445 18.195 -2.525 -1.142 0.181  HE2  TYO 25 
TYO HZ   HZ   H 0 1 N N N N N N 23.381 -4.399 20.258 -3.417 1.710  -0.474 HZ   TYO 26 
TYO HOH1 HOH1 H 0 0 N N N N N N 21.700 -6.361 20.045 -6.683 0.810  0.335  HOH1 TYO 27 
TYO HXT  HXT  H 0 1 N Y N Y N Y 29.515 -7.101 18.547 5.295  0.482  -0.382 HXT  TYO 28 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
TYO N   CA   SING N N 1  
TYO N   H    SING N N 2  
TYO N   H2   SING N N 3  
TYO CA  C    SING N N 4  
TYO CA  CB   SING N N 5  
TYO CA  HA   SING N N 6  
TYO CB  CG   SING N N 7  
TYO CB  HB1  SING N N 8  
TYO CB  HB2  SING N N 9  
TYO CG  CD2  DOUB N Z 10 
TYO CG  CD1  SING N N 11 
TYO CD1 CE1  DOUB N E 12 
TYO CD1 HD1  SING N N 13 
TYO CE1 OE1  SING N N 14 
TYO CE1 HE1  SING N N 15 
TYO OE1 HOE1 SING N N 16 
TYO CD2 CE2  SING N N 17 
TYO CD2 HD21 SING N N 18 
TYO CE2 CZ   DOUB N E 19 
TYO CE2 HE2  SING N N 20 
TYO CZ  OH   SING N N 21 
TYO CZ  HZ   SING N N 22 
TYO OH  OH1  SING N N 23 
TYO OH1 HOH1 SING N N 24 
TYO C   O    DOUB N N 25 
TYO C   OXT  SING N N 26 
TYO OXT HXT  SING N N 27 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
TYO SMILES           ACDLabs              10.04 "O=C(O)C(N)CC(\C=C\O)=C\C=C\OO"                                                                                   
TYO SMILES_CANONICAL CACTVS               3.341 "N[C@@H](CC(/C=C/O)=C/C=C/OO)C(O)=O"                                                                              
TYO SMILES           CACTVS               3.341 "N[CH](CC(C=CO)=CC=COO)C(O)=O"                                                                                    
TYO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H](C(=O)O)N)C(=C\C=C\OO)C=CO"                                                                              
TYO SMILES           "OpenEye OEToolkits" 1.5.0 "C(C(C(=O)O)N)C(=CC=COO)C=CO"                                                                                     
TYO InChI            InChI                1.03  "InChI=1S/C9H13NO5/c10-8(9(12)13)6-7(3-4-11)2-1-5-15-14/h1-5,8,11,14H,6,10H2,(H,12,13)/b4-3?,5-1+,7-2+/t8-/m0/s1" 
TYO InChIKey         InChI                1.03  AMEKAKFJYGGFTQ-BFJUJRPPSA-N                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
TYO "SYSTEMATIC NAME" ACDLabs              10.04 "(2S,4Z,6E)-2-amino-7-hydroperoxy-4-[(E)-2-hydroxyethenyl]hepta-4,6-dienoic acid" 
TYO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,6E)-2-amino-7-hydroperoxy-4-(2-hydroxyethenyl)hepta-4,6-dienoic acid"        
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
TYO "Create component"  2006-09-22 EBI  
TYO "Modify descriptor" 2011-06-04 RCSB 
TYO "Modify backbone"   2023-11-03 PDBE 
TYO "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            TYO 
_pdbx_chem_comp_pcm.modified_residue_id                TYR 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
