data_1AP
# 
_chem_comp.id                                    1AP 
_chem_comp.name                                  "2,6-DIAMINOPURINE NUCLEOTIDE" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H15 N6 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               DA 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-10-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        346.236 
_chem_comp.one_letter_code                       A 
_chem_comp.three_letter_code                     1AP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1ZAY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1AP N1    N1    N 0 1 Y N N 14.868 -1.642 -2.205 -0.449 0.348  5.597  N1    1AP 1  
1AP C2    C2    C 0 1 Y N N 16.153 -1.853 -2.676 0.600  0.924  5.025  C2    1AP 2  
1AP C4    C4    C 0 1 Y N N 15.820 -0.436 -4.370 -0.000 0.170  2.932  C4    1AP 3  
1AP C5    C5    C 0 1 Y N N 14.543 -0.148 -3.996 -1.126 -0.455 3.494  C5    1AP 4  
1AP C6    C6    C 0 1 Y N N 14.043 -0.789 -2.851 -1.329 -0.342 4.880  C6    1AP 5  
1AP C8    C8    C 0 1 Y N N 14.879 1.010  -5.739 -1.162 -0.853 1.362  C8    1AP 6  
1AP N2    N2    N 0 1 N N N 16.892 -2.715 -1.962 1.487  1.634  5.817  N2    1AP 7  
1AP N3    N3    N 0 1 Y N N 16.684 -1.274 -3.762 0.825  0.847  3.723  N3    1AP 8  
1AP N9    N9    N 0 1 Y N N 16.044 0.314  -5.500 -0.049 -0.097 1.588  N9    1AP 9  
1AP N7    N7    N 0 1 Y N N 13.950 0.760  -4.860 -1.792 -1.062 2.481  N7    1AP 10 
1AP N6    N6    N 0 1 N N N 12.812 -0.597 -2.374 -2.421 -0.938 5.485  N6    1AP 11 
1AP P     P     P 0 1 N N N 16.807 5.257  -7.608 -0.828 0.322  -4.920 P     1AP 12 
1AP OP1   O1P   O 0 1 N N N 17.720 6.193  -8.303 -1.604 1.553  -5.609 OP1   1AP 13 
1AP OP2   O2P   O 0 1 N N N 15.380 5.191  -8.025 -1.792 -0.754 -4.607 OP2   1AP 14 
1AP "O5'" "O5'" O 0 1 N N N 17.397 3.773  -7.645 -0.124 0.824  -3.562 "O5'" 1AP 15 
1AP "C5'" "C5'" C 0 1 N N N 18.665 3.457  -7.089 0.544  -0.306 -3.000 "C5'" 1AP 16 
1AP "C4'" "C4'" C 0 1 N N R 18.840 1.950  -6.950 1.237  0.104  -1.700 "C4'" 1AP 17 
1AP "O4'" "O4'" O 0 1 N N N 18.037 1.459  -5.851 0.266  0.474  -0.695 "O4'" 1AP 18 
1AP "C1'" "C1'" C 0 1 N N R 17.272 0.356  -6.288 0.915  0.347  0.580  "C1'" 1AP 19 
1AP "C2'" "C2'" C 0 1 N N N 17.067 0.593  -7.771 2.033  -0.702 0.425  "C2'" 1AP 20 
1AP "C3'" "C3'" C 0 1 N N S 18.424 1.128  -8.176 1.972  -1.105 -1.067 "C3'" 1AP 21 
1AP "O3'" "O3'" O 0 1 N N N 19.318 0.021  -8.315 3.285  -1.246 -1.612 "O3'" 1AP 22 
1AP OP3   O3P   O 0 1 N Y N 16.881 5.697  -6.054 0.293  -0.237 -5.930 OP3   1AP 23 
1AP H81   1H8   H 0 1 N N N 14.703 1.713  -6.570 -1.474 -1.224 0.397  H81   1AP 24 
1AP HN21  1HN2  H 0 0 N N N 17.838 -2.870 -2.308 1.335  1.704  6.772  HN21  1AP 25 
1AP HN22  2HN2  H 0 0 N N N 16.401 -3.604 -1.871 2.263  2.057  5.417  HN22  1AP 26 
1AP HN61  1HN6  H 0 0 N N N 12.189 0.047  -2.861 -2.551 -0.853 6.443  HN61  1AP 27 
1AP HN62  2HN6  H 0 0 N N N 12.878 -0.313 -1.396 -3.056 -1.441 4.952  HN62  1AP 28 
1AP H1P   H1P   H 0 1 N N N 18.631 6.235  -8.036 -2.010 1.211  -6.417 H1P   1AP 29 
1AP H52   2H5   H 0 1 N N N 19.496 3.915  -7.673 -0.182 -1.091 -2.792 H52   1AP 30 
1AP H51   1H5   H 0 1 N N N 18.831 3.981  -6.119 1.286  -0.677 -3.707 H51   1AP 31 
1AP H4    H4    H 0 1 N N N 19.936 1.817  -6.797 1.932  0.924  -1.880 H4    1AP 32 
1AP H11   1H1   H 0 1 N N N 17.749 -0.641 -6.146 1.344  1.304  0.874  H11   1AP 33 
1AP H21   1H2   H 0 1 N N N 16.709 -0.290 -8.350 3.003  -0.265 0.663  H21   1AP 34 
1AP H22   2H2   H 0 1 N N N 16.199 1.242  -8.035 1.836  -1.565 1.061  H22   1AP 35 
1AP H31   1H3   H 0 1 N N N 18.423 1.708  -9.127 1.397  -2.022 -1.200 H31   1AP 36 
1AP HO31  1HO3  H 0 0 N N N 19.060 -0.488 -9.074 3.720  -1.952 -1.114 HO31  1AP 37 
1AP H3P   H3P   H 0 1 N N N 16.295 5.096  -5.608 0.899  0.494  -6.108 H3P   1AP 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1AP N1    C2    SING Y N 1  
1AP N1    C6    DOUB Y N 2  
1AP C2    N2    SING N N 3  
1AP C2    N3    DOUB Y N 4  
1AP C4    C5    DOUB Y N 5  
1AP C4    N3    SING Y N 6  
1AP C4    N9    SING Y N 7  
1AP C5    C6    SING Y N 8  
1AP C5    N7    SING Y N 9  
1AP C6    N6    SING N N 10 
1AP C8    N9    SING Y N 11 
1AP C8    N7    DOUB Y N 12 
1AP C8    H81   SING N N 13 
1AP N2    HN21  SING N N 14 
1AP N2    HN22  SING N N 15 
1AP N9    "C1'" SING N N 16 
1AP N6    HN61  SING N N 17 
1AP N6    HN62  SING N N 18 
1AP P     OP1   SING N N 19 
1AP P     OP2   DOUB N N 20 
1AP P     "O5'" SING N N 21 
1AP P     OP3   SING N N 22 
1AP OP1   H1P   SING N N 23 
1AP "O5'" "C5'" SING N N 24 
1AP "C5'" "C4'" SING N N 25 
1AP "C5'" H52   SING N N 26 
1AP "C5'" H51   SING N N 27 
1AP "C4'" "O4'" SING N N 28 
1AP "C4'" "C3'" SING N N 29 
1AP "C4'" H4    SING N N 30 
1AP "O4'" "C1'" SING N N 31 
1AP "C1'" "C2'" SING N N 32 
1AP "C1'" H11   SING N N 33 
1AP "C2'" "C3'" SING N N 34 
1AP "C2'" H21   SING N N 35 
1AP "C2'" H22   SING N N 36 
1AP "C3'" "O3'" SING N N 37 
1AP "C3'" H31   SING N N 38 
1AP "O3'" HO31  SING N N 39 
1AP OP3   H3P   SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1AP SMILES           ACDLabs              10.04 "O=P(O)(O)OCC3OC(n2cnc1c(nc(nc12)N)N)CC3O"                                                                                                             
1AP SMILES_CANONICAL CACTVS               3.341 "Nc1nc(N)c2ncn([C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)c2n1"                                                                                            
1AP SMILES           CACTVS               3.341 "Nc1nc(N)c2ncn([CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)c2n1"                                                                                                
1AP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(nc(nc2n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)N)N"                                                                                              
1AP SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc2c(nc(nc2n1C3CC(C(O3)COP(=O)(O)O)O)N)N"                                                                                                           
1AP InChI            InChI                1.03  "InChI=1S/C10H15N6O6P/c11-8-7-9(15-10(12)14-8)16(3-13-7)6-1-4(17)5(22-6)2-21-23(18,19)20/h3-6,17H,1-2H2,(H2,18,19,20)(H4,11,12,14,15)/t4-,5+,6+/m0/s1" 
1AP InChIKey         InChI                1.03  RZZBUMCFKOLHEH-KVQBGUIXSA-N                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
1AP "SYSTEMATIC NAME" ACDLabs              10.04 
;2-amino-2'-deoxyadenosine 5'-(dihydrogen phosphate)
;
1AP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(2,6-diaminopurin-9-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1AP "Create component"  1999-10-08 RCSB 
1AP "Modify descriptor" 2011-06-04 RCSB 
# 
