data_2YP
# 
_chem_comp.id                                    2YP 
_chem_comp.name                                  "(2R)-2-[[(1R,2S,3R,4R,5R)-4-acetamido-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-6,8-dioxabicyclo[3.2.1]octan-3-yl]oxy]propanoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H30 N2 O12" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-04-24 
_chem_comp.pdbx_modified_date                    2014-05-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        478.448 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2YP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4Q5K 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2YP C1  C1  C 0 1 N N S -19.373 -1.342 -11.984 -1.695 -0.334 0.736  C1  2YP 1  
2YP O1  O1  O 0 1 N N N -20.391 -2.029 -12.617 -0.746 0.722  0.575  O1  2YP 2  
2YP C2  C2  C 0 1 N N R -18.436 -2.386 -11.403 -3.081 0.156  0.308  C2  2YP 3  
2YP C3  C3  C 0 1 N N R -17.168 -1.733 -10.849 -4.081 -0.998 0.427  C3  2YP 4  
2YP O3  O3  O 0 1 N N N -16.207 -2.743 -10.606 -5.362 -0.571 -0.040 O3  2YP 5  
2YP C4  C4  C 0 1 N N S -16.571 -0.722 -11.822 -3.591 -2.173 -0.426 C4  2YP 6  
2YP OAC OAC O 0 1 N N N -19.688 -4.928 -11.645 -2.519 2.757  -0.130 OAC 2YP 7  
2YP CAB CAB C 0 1 N N N -19.722 -4.326 -10.561 -3.202 2.530  0.846  CAB 2YP 8  
2YP CAA CAA C 0 1 N N N -20.471 -4.865 -9.385  -3.717 3.669  1.688  CAA 2YP 9  
2YP N2  N2  N 0 1 N N N -19.110 -3.149 -10.366 -3.501 1.258  1.178  N2  2YP 10 
2YP O4  O4  O 0 1 N N N -15.581 0.048  -11.144 -4.478 -3.282 -0.266 O4  2YP 11 
2YP C5  C5  C 0 1 N N R -17.652 0.223  -12.334 -2.185 -2.573 0.030  C5  2YP 12 
2YP C6  C6  C 0 1 N N N -17.150 1.209  -13.379 -1.665 -3.706 -0.856 C6  2YP 13 
2YP O6  O6  O 0 1 N N N -16.621 0.565  -14.540 -0.403 -4.158 -0.359 O6  2YP 14 
2YP O5  O5  O 0 1 N N N -18.700 -0.552 -12.940 -1.313 -1.446 -0.076 O5  2YP 15 
2YP CA4 CA4 C 0 1 N N S -21.576 -1.298 -12.963 0.521  0.463  1.183  CA4 2YP 16 
2YP CA3 CA3 C 0 1 N N R -22.306 -2.223 -13.932 1.495  -0.082 0.132  CA3 2YP 17 
2YP OAH OAH O 0 1 N N N -23.037 -1.433 -14.880 2.699  -0.507 0.773  OAH 2YP 18 
2YP CAI CAI C 0 1 N N R -22.498 -1.548 -16.208 3.365  -1.581 0.106  CAI 2YP 19 
2YP CAJ CAJ C 0 1 N N N -21.288 -0.637 -16.343 2.851  -2.915 0.651  CAJ 2YP 20 
2YP CAL CAL C 0 1 N N N -23.597 -1.261 -17.237 4.849  -1.479 0.346  CAL 2YP 21 
2YP OAM OAM O 0 1 N N N -23.276 -0.917 -18.383 5.284  -0.633 1.092  OAM 2YP 22 
2YP O   O   O 0 1 N N N -24.783 -1.410 -16.808 5.688  -2.328 -0.268 O   2YP 23 
2YP CA5 CA5 C 0 1 N N R -22.413 -0.972 -11.725 1.097  1.770  1.753  CA5 2YP 24 
2YP OA5 OA5 O 0 1 N N N -22.822 -2.210 -11.090 1.132  2.730  0.669  OA5 2YP 25 
2YP CA6 CA6 C 0 1 N N N -23.753 -0.324 -12.041 2.598  1.535  2.044  CA6 2YP 26 
2YP OA6 OA6 O 0 1 N N N -24.640 -1.448 -12.186 3.273  1.902  0.828  OA6 2YP 27 
2YP CA1 CA1 C 0 1 N N R -23.861 -2.615 -11.942 2.257  2.282  -0.118 CA1 2YP 28 
2YP CA2 CA2 C 0 1 N N R -23.271 -3.189 -13.234 1.816  1.022  -0.881 CA2 2YP 29 
2YP NAD NAD N 0 1 N N N -22.631 -4.469 -12.967 0.622  1.322  -1.675 NAD 2YP 30 
2YP CAE CAE C 0 1 N N N -23.132 -5.630 -13.342 0.750  1.814  -2.923 CAE 2YP 31 
2YP OAG OAG O 0 1 N N N -24.189 -5.703 -13.957 1.849  1.920  -3.424 OAG 2YP 32 
2YP CAF CAF C 0 1 N N N -22.338 -6.846 -12.964 -0.474 2.231  -3.697 CAF 2YP 33 
2YP H1  H1  H 0 1 N N N -19.765 -0.715 -11.169 -1.724 -0.640 1.781  H1  2YP 34 
2YP H2  H2  H 0 1 N N N -18.140 -3.068 -12.213 -3.043 0.500  -0.725 H2  2YP 35 
2YP H3  H3  H 0 1 N N N -17.420 -1.215 -9.912  -4.157 -1.309 1.469  H3  2YP 36 
2YP H4  H4  H 0 1 N N N -16.564 -3.382 -10.000 -6.045 -1.254 0.007  H4  2YP 37 
2YP H5  H5  H 0 1 N N N -16.127 -1.259 -12.673 -3.564 -1.876 -1.474 H5  2YP 38 
2YP H6  H6  H 0 1 N N N -20.943 -5.821 -9.657  -4.687 3.990  1.309  H6  2YP 39 
2YP H7  H7  H 0 1 N N N -19.774 -5.025 -8.549  -3.821 3.339  2.721  H7  2YP 40 
2YP H8  H8  H 0 1 N N N -21.247 -4.146 -9.083  -3.014 4.501  1.641  H8  2YP 41 
2YP H9  H9  H 0 1 N N N -19.118 -2.769 -9.441  -3.993 1.072  1.993  H9  2YP 42 
2YP H10 H10 H 0 1 N N N -14.899 -0.528 -10.819 -4.228 -4.063 -0.779 H10 2YP 43 
2YP H11 H11 H 0 1 N N N -18.054 0.790  -11.481 -2.221 -2.909 1.066  H11 2YP 44 
2YP H12 H12 H 0 1 N N N -16.359 1.826  -12.928 -2.376 -4.532 -0.845 H12 2YP 45 
2YP H13 H13 H 0 1 N N N -17.988 1.853  -13.685 -1.544 -3.344 -1.877 H13 2YP 46 
2YP H14 H14 H 0 1 N N N -16.323 1.221  -15.159 -0.013 -4.878 -0.874 H14 2YP 47 
2YP H15 H15 H 0 1 N N N -21.315 -0.363 -13.480 0.399  -0.264 1.986  H15 2YP 48 
2YP H16 H16 H 0 1 N N N -21.552 -2.822 -14.464 1.039  -0.927 -0.383 H16 2YP 49 
2YP H17 H17 H 0 1 N N N -22.158 -2.582 -16.364 3.165  -1.524 -0.964 H17 2YP 50 
2YP H18 H18 H 0 1 N N N -20.544 -0.899 -15.576 1.777  -2.989 0.477  H18 2YP 51 
2YP H19 H19 H 0 1 N N N -20.845 -0.762 -17.342 3.358  -3.735 0.142  H19 2YP 52 
2YP H20 H20 H 0 1 N N N -21.600 0.409  -16.209 3.050  -2.973 1.721  H20 2YP 53 
2YP H21 H21 H 0 1 N N N -25.399 -1.216 -17.505 6.631  -2.224 -0.083 H21 2YP 54 
2YP H22 H22 H 0 1 N N N -21.837 -0.339 -11.034 0.541  2.130  2.618  H22 2YP 55 
2YP H23 H23 H 0 1 N N N -23.699 0.258  -12.973 2.928  2.168  2.867  H23 2YP 56 
2YP H24 H24 H 0 1 N N N -24.078 0.330  -11.219 2.779  0.486  2.278  H24 2YP 57 
2YP H25 H25 H 0 1 N N N -24.476 -3.389 -11.460 2.611  3.064  -0.790 H25 2YP 58 
2YP H26 H26 H 0 1 N N N -24.110 -3.364 -13.924 2.619  0.691  -1.539 H26 2YP 59 
2YP H27 H27 H 0 1 N N N -21.763 -4.468 -12.471 -0.260 1.167  -1.303 H27 2YP 60 
2YP H28 H28 H 0 1 N N N -22.855 -7.748 -13.322 -1.354 2.148  -3.059 H28 2YP 61 
2YP H29 H29 H 0 1 N N N -21.340 -6.789 -13.423 -0.361 3.264  -4.026 H29 2YP 62 
2YP H30 H30 H 0 1 N N N -22.236 -6.892 -11.870 -0.593 1.584  -4.566 H30 2YP 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2YP OAM CAL DOUB N N 1  
2YP CAL O   SING N N 2  
2YP CAL CAI SING N N 3  
2YP CAJ CAI SING N N 4  
2YP CAI OAH SING N N 5  
2YP OAH CA3 SING N N 6  
2YP O6  C6  SING N N 7  
2YP OAG CAE DOUB N N 8  
2YP CA3 CA2 SING N N 9  
2YP CA3 CA4 SING N N 10 
2YP C6  C5  SING N N 11 
2YP CAE NAD SING N N 12 
2YP CAE CAF SING N N 13 
2YP CA2 NAD SING N N 14 
2YP CA2 CA1 SING N N 15 
2YP CA4 O1  SING N N 16 
2YP CA4 CA5 SING N N 17 
2YP O5  C5  SING N N 18 
2YP O5  C1  SING N N 19 
2YP O1  C1  SING N N 20 
2YP C5  C4  SING N N 21 
2YP OA6 CA6 SING N N 22 
2YP OA6 CA1 SING N N 23 
2YP CA6 CA5 SING N N 24 
2YP C1  C2  SING N N 25 
2YP CA1 OA5 SING N N 26 
2YP C4  O4  SING N N 27 
2YP C4  C3  SING N N 28 
2YP CA5 OA5 SING N N 29 
2YP OAC CAB DOUB N N 30 
2YP C2  C3  SING N N 31 
2YP C2  N2  SING N N 32 
2YP C3  O3  SING N N 33 
2YP CAB N2  SING N N 34 
2YP CAB CAA SING N N 35 
2YP C1  H1  SING N N 36 
2YP C2  H2  SING N N 37 
2YP C3  H3  SING N N 38 
2YP O3  H4  SING N N 39 
2YP C4  H5  SING N N 40 
2YP CAA H6  SING N N 41 
2YP CAA H7  SING N N 42 
2YP CAA H8  SING N N 43 
2YP N2  H9  SING N N 44 
2YP O4  H10 SING N N 45 
2YP C5  H11 SING N N 46 
2YP C6  H12 SING N N 47 
2YP C6  H13 SING N N 48 
2YP O6  H14 SING N N 49 
2YP CA4 H15 SING N N 50 
2YP CA3 H16 SING N N 51 
2YP CAI H17 SING N N 52 
2YP CAJ H18 SING N N 53 
2YP CAJ H19 SING N N 54 
2YP CAJ H20 SING N N 55 
2YP O   H21 SING N N 56 
2YP CA5 H22 SING N N 57 
2YP CA6 H23 SING N N 58 
2YP CA6 H24 SING N N 59 
2YP CA1 H25 SING N N 60 
2YP CA2 H26 SING N N 61 
2YP NAD H27 SING N N 62 
2YP CAF H28 SING N N 63 
2YP CAF H29 SING N N 64 
2YP CAF H30 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2YP SMILES           ACDLabs              12.01 "O=C(O)C(OC3C(OC1OC(CO)C(O)C(O)C1NC(=O)C)C2OC(OC2)C3NC(=O)C)C" 
2YP InChI            InChI                1.03  
"InChI=1S/C19H30N2O12/c1-6(17(27)28)30-16-12(21-8(3)24)18-29-5-10(32-18)15(16)33-19-11(20-7(2)23)14(26)13(25)9(4-22)31-19/h6,9-16,18-19,22,25-26H,4-5H2,1-3H3,(H,20,23)(H,21,24)(H,27,28)/t6-,9-,10-,11-,12-,13-,14-,15-,16-,18-,19+/m1/s1" 
2YP InChIKey         InChI                1.03  MWWQKONGFKUAEK-STFZFCBQSA-N 
2YP SMILES_CANONICAL CACTVS               3.385 "C[C@@H](O[C@@H]1[C@@H](NC(C)=O)[C@@H]2OC[C@@H](O2)[C@H]1O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3NC(C)=O)C(O)=O" 
2YP SMILES           CACTVS               3.385 "C[CH](O[CH]1[CH](NC(C)=O)[CH]2OC[CH](O2)[CH]1O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3NC(C)=O)C(O)=O" 
2YP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H](C(=O)O)O[C@@H]1[C@H]([C@@H]2OC[C@H]([C@H]1O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)NC(=O)C)O2)NC(=O)C" 
2YP SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C(=O)O)OC1C(C2OCC(C1OC3C(C(C(C(O3)CO)O)O)NC(=O)C)O2)NC(=O)C" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2YP "SYSTEMATIC NAME" ACDLabs              12.01 
"(2R)-2-{[(1R,2S,3R,4R,5R)-4-(acetylamino)-2-{[(2S,3R,4R,5S,6R)-3-(acetylamino)-4,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}-6,8-dioxabicyclo[3.2.1]oct-3-yl]oxy}propanoic acid (non-preferred name)" 
2YP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-2-[[(1R,2S,3R,4R,5R)-4-acetamido-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-6,8-dioxabicyclo[3.2.1]octan-3-yl]oxy]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2YP "Create component" 2014-04-24 RCSB 
2YP "Initial release"  2014-05-21 RCSB 
# 
