data_5SP
#

_chem_comp.id                                   5SP
_chem_comp.name                                 5-O-phosphono-D-xylulose
_chem_comp.type                                 saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H11 O8 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "D-xylulose 5-phosphate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-03-12
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       230.110
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5SP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3LQU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5SP  O1    O1    O  0  1  N  N  N  -9.722  -21.772  20.480   5.076   1.358   0.057  O1    5SP   1  
5SP  C2    C2    C  0  1  N  N  N  -8.833  -22.674  21.065   3.802   1.179  -0.566  C2    5SP   2  
5SP  C3    C3    C  0  1  N  N  N  -8.005  -23.537  20.150   3.226  -0.153  -0.159  C3    5SP   3  
5SP  O4    O4    O  0  1  N  N  N  -8.222  -23.523  18.956   3.843  -0.875   0.587  O4    5SP   4  
5SP  C5    C5    C  0  1  N  N  S  -6.994  -24.521  20.709   1.881  -0.584  -0.683  C5    5SP   5  
5SP  C6    C6    C  0  1  N  N  R  -7.476  -25.291  21.937   0.779   0.191   0.042  C6    5SP   6  
5SP  C7    C7    C  0  1  N  N  N  -7.534  -26.781  21.671  -0.589  -0.334  -0.399  C7    5SP   7  
5SP  O8    O8    O  0  1  N  N  N  -7.304  -27.184  20.343  -1.618   0.465   0.188  O8    5SP   8  
5SP  P9    P9    P  0  1  N  N  N  -6.330  -28.399  20.084  -3.186   0.197  -0.061  P9    5SP   9  
5SP  O10   O10   O  0  1  N  N  N  -6.346  -29.216  21.361  -3.461   0.192  -1.515  O10   5SP  10  
5SP  O11   O11   O  0  1  N  N  N  -4.874  -27.894  19.838  -3.593  -1.229   0.567  O11   5SP  11  
5SP  O12   O12   O  0  1  N  N  N  -6.834  -29.231  18.837  -4.048   1.360   0.644  O12   5SP  12  
5SP  O13   O13   O  0  1  N  N  N  -5.687  -24.038  20.754   1.707  -1.984  -0.456  O13   5SP  13  
5SP  O14   O14   O  0  1  N  N  N  -6.888  -24.957  23.142   0.923   0.016   1.453  O14   5SP  14  
5SP  HO1   HO1   H  0  1  N  N  N  -9.705  -21.877  19.536   5.506   2.196  -0.161  HO1   5SP  15  
5SP  H2    H2    H  0  1  N  N  N  -8.128  -22.081  21.666   3.129   1.977  -0.251  H2    5SP  16  
5SP  H2A   H2A   H  0  1  N  N  N  -9.434  -23.355  21.686   3.919   1.209  -1.649  H2A   5SP  17  
5SP  H5    H5    H  0  1  N  N  N  -6.922  -25.316  19.952   1.825  -0.380  -1.753  H5    5SP  18  
5SP  H6    H6    H  0  1  N  N  N  -8.507  -24.942  22.095   0.858   1.250  -0.203  H6    5SP  19  
5SP  H7    H7    H  0  1  N  N  N  -6.762  -27.255  22.295  -0.664  -0.283  -1.485  H7    5SP  20  
5SP  H7A   H7A   H  0  1  N  N  N  -8.542  -27.123  21.947  -0.703  -1.368  -0.075  H7A   5SP  21  
5SP  HO11  HO11  H  0  0  N  N  N  -4.309  -28.203  20.536  -3.440  -1.297   1.519  HO11  5SP  22  
5SP  HO12  HO12  H  0  0  N  N  N  -7.062  -30.111  19.114  -5.003   1.262   0.535  HO12  5SP  23  
5SP  HO13  HO13  H  0  0  N  N  N  -5.114  -24.706  21.113   1.745  -2.239   0.476  HO13  5SP  24  
5SP  HO14  HO14  H  0  0  N  N  N  -7.258  -25.492  23.834   0.864  -0.904   1.743  HO14  5SP  25  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5SP  O1   C2    SING  N  N   1  
5SP  C2   C3    SING  N  N   2  
5SP  C3   O4    DOUB  N  N   3  
5SP  C3   C5    SING  N  N   4  
5SP  C5   C6    SING  N  N   5  
5SP  C5   O13   SING  N  N   6  
5SP  C6   C7    SING  N  N   7  
5SP  C6   O14   SING  N  N   8  
5SP  C7   O8    SING  N  N   9  
5SP  O8   P9    SING  N  N  10  
5SP  P9   O10   DOUB  N  N  11  
5SP  P9   O11   SING  N  N  12  
5SP  P9   O12   SING  N  N  13  
5SP  O1   HO1   SING  N  N  14  
5SP  C2   H2    SING  N  N  15  
5SP  C2   H2A   SING  N  N  16  
5SP  C5   H5    SING  N  N  17  
5SP  C6   H6    SING  N  N  18  
5SP  C7   H7    SING  N  N  19  
5SP  C7   H7A   SING  N  N  20  
5SP  O11  HO11  SING  N  N  21  
5SP  O12  HO12  SING  N  N  22  
5SP  O13  HO13  SING  N  N  23  
5SP  O14  HO14  SING  N  N  24  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5SP  SMILES            ACDLabs               12.01  "O=P(OCC(O)C(O)C(=O)CO)(O)O"  
5SP  SMILES_CANONICAL  CACTVS                3.370  "OCC(=O)[C@@H](O)[C@H](O)CO[P](O)(O)=O"  
5SP  SMILES            CACTVS                3.370  "OCC(=O)[CH](O)[CH](O)CO[P](O)(O)=O"  
5SP  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "C([C@H]([C@@H](C(=O)CO)O)O)OP(=O)(O)O"  
5SP  SMILES            "OpenEye OEToolkits"  1.7.0  "C(C(C(C(=O)CO)O)O)OP(=O)(O)O"  
5SP  InChI             InChI                 1.03   "InChI=1S/C5H11O8P/c6-1-3(7)5(9)4(8)2-13-14(10,11)12/h4-6,8-9H,1-2H2,(H2,10,11,12)/t4-,5-/m1/s1"  
5SP  InChIKey          InChI                 1.03   FNZLKVNUWIIPSJ-RFZPGFLSSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5SP  "SYSTEMATIC NAME"  ACDLabs               12.01  5-O-phosphono-D-xylulose  
5SP  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "[(2R,3S)-2,3,5-trihydroxy-4-oxo-pentyl] dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5SP  "Create component"   2010-03-12  PDBJ  
5SP  "Modify synonyms"    2010-10-28  PDBJ  
5SP  "Modify descriptor"  2011-06-04  RCSB  
5SP  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     5SP
_pdbx_chem_comp_synonyms.name        "D-xylulose 5-phosphate"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
