data_9SP
#

_chem_comp.id                                   9SP
_chem_comp.name                                 "(2R,3R,4R,5R,6R)-5-acetamido-6-[(1R)-1,3-bis(oxidanyl)propyl]-2,3-bis(fluoranyl)-4-oxidanyl-oxane-2-carboxylic acid"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C11 H17 F2 N O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;(2~{R},3~{R},4~{R},5~{R},6~{R})-5-acetamido-6-[(1~{R})-1,3-bis(oxidanyl)propyl]-2,3-bis(fluoranyl)-4-oxidanyl-oxane-2-c
 arboxylic acid
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-06-07
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       313.252
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9SP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5W2W
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     9SP
_pdbx_chem_comp_synonyms.name        
;(2~{R},3~{R},4~{R},5~{R},6~{R})-5-acetamido-6-[(1~{R})-1,3-bis(oxidanyl)propyl]-2,3-bis(fluoranyl)-4-oxidanyl-oxane-2-c
 arboxylic acid
;

_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9SP  O1B   OAC  O  0  1  N  N  N  17.830  32.498  73.393  -1.524   3.034  -1.677  O1B   9SP   1  
9SP  C1    CAO  C  0  1  N  N  N  16.846  33.260  73.393  -0.438   2.453  -1.145  C1    9SP   2  
9SP  O1A   OAE  O  0  1  N  N  N  16.670  34.106  72.503   0.539   2.258  -1.828  O1A   9SP   3  
9SP  C2    CAV  C  0  1  N  N  R  15.861  33.148  74.550  -0.435   2.045   0.306  C2    9SP   4  
9SP  FAJ   FAJ  F  0  1  N  N  N  16.273  33.996  75.498  -0.268   3.179   1.109  FAJ   9SP   5  
9SP  C3    CAS  C  0  1  N  N  R  14.387  33.484  74.181  -1.766   1.369   0.648  C3    9SP   6  
9SP  FAI   FAI  F  0  1  N  N  N  13.737  33.942  75.321  -1.785   1.037   2.007  FAI   9SP   7  
9SP  C4    CAR  C  0  1  N  N  R  13.590  32.336  73.494  -1.914   0.097  -0.192  C4    9SP   8  
9SP  O4    OAF  O  0  1  N  N  N  12.175  32.569  73.604  -3.118  -0.580   0.173  O4    9SP   9  
9SP  O6    OAM  O  0  1  N  N  N  15.942  31.810  75.082   0.637   1.131   0.543  O6    9SP  10  
9SP  C6    CAU  C  0  1  N  N  R  15.363  30.716  74.321   0.577  -0.056  -0.250  C6    9SP  11  
9SP  C7    CAQ  C  0  1  N  N  R  15.731  29.460  75.101   1.784  -0.942   0.065  C7    9SP  12  
9SP  C8    CAP  C  0  1  N  N  N  17.251  29.170  75.059   3.071  -0.140  -0.134  C8    9SP  13  
9SP  C9    CAK  C  0  1  N  N  N  17.865  28.741  76.382   4.279  -1.059   0.060  C9    9SP  14  
9SP  O9    OAD  O  0  1  N  N  N  17.058  27.700  76.966   5.482  -0.309  -0.126  O9    9SP  15  
9SP  O7    OAG  O  0  1  N  N  N  15.201  29.574  76.437   1.705  -1.389   1.421  O7    9SP  16  
9SP  C5    CAT  C  0  1  N  N  R  13.844  30.956  74.125  -0.713  -0.817   0.069  C5    9SP  17  
9SP  N5    NAL  N  0  1  N  N  N  13.218  29.966  73.225  -0.805  -2.004  -0.785  N5    9SP  18  
9SP  C10   CAN  C  0  1  N  N  N  12.188  29.175  73.565  -1.535  -3.065  -0.387  C10   9SP  19  
9SP  O10   OAB  O  0  1  N  N  N  11.633  29.162  74.655  -2.114  -3.038   0.678  O10   9SP  20  
9SP  C11   CAA  C  0  1  N  N  N  11.698  28.247  72.500  -1.630  -4.286  -1.266  C11   9SP  21  
9SP  HO1B  H1   H  0  0  N  N  N  18.373  32.681  72.635  -1.478   3.278  -2.612  HO1B  9SP  22  
9SP  H32   H2   H  0  1  N  N  N  14.431  34.308  73.453  -2.588   2.050   0.428  H32   9SP  23  
9SP  H4    H3   H  0  1  N  N  N  13.883  32.297  72.434  -1.950   0.360  -1.249  H4    9SP  24  
9SP  HO4   H4   H  0  1  N  Y  N  11.963  33.414  73.226  -3.920  -0.058   0.033  HO4   9SP  25  
9SP  H6    H5   H  0  1  N  N  N  15.836  30.666  73.329   0.589   0.211  -1.307  H6    9SP  26  
9SP  H7    H6   H  0  1  N  N  N  15.232  28.614  74.606   1.786  -1.804  -0.602  H7    9SP  27  
9SP  H8    H7   H  0  1  N  N  N  17.424  28.367  74.327   3.089   0.275  -1.142  H8    9SP  28  
9SP  H8A   H8   H  0  1  N  N  N  17.763  30.085  74.727   3.111   0.670   0.594  H8A   9SP  29  
9SP  H92   H9   H  0  1  N  N  N  18.883  28.363  76.209   4.262  -1.474   1.068  H92   9SP  30  
9SP  H91   H10  H  0  1  N  N  N  17.905  29.602  77.065   4.240  -1.869  -0.667  H91   9SP  31  
9SP  HO9   H11  H  0  1  N  N  N  17.439  27.430  77.793   6.290  -0.829  -0.017  HO9   9SP  32  
9SP  HO7   H12  H  0  1  N  Y  N  15.424  28.796  76.934   1.699  -0.673   2.071  HO7   9SP  33  
9SP  H5    H13  H  0  1  N  N  N  13.353  30.921  75.109  -0.707  -1.120   1.116  H5    9SP  34  
9SP  HN5   H14  H  0  1  N  N  N  13.587  29.879  72.299  -0.342  -2.026  -1.637  HN5   9SP  35  
9SP  H111  H15  H  0  0  N  N  N  10.856  27.655  72.888  -1.048  -4.126  -2.174  H111  9SP  36  
9SP  H113  H16  H  0  0  N  N  N  11.365  28.831  71.629  -1.238  -5.150  -0.730  H113  9SP  37  
9SP  H112  H17  H  0  0  N  N  N  12.513  27.572  72.199  -2.673  -4.464  -1.528  H112  9SP  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9SP  C11  C10   SING  N  N   1  
9SP  O1A  C1    DOUB  N  N   2  
9SP  N5   C10   SING  N  N   3  
9SP  N5   C5    SING  N  N   4  
9SP  O1B  C1    SING  N  N   5  
9SP  C1   C2    SING  N  N   6  
9SP  C4   O4    SING  N  N   7  
9SP  C4   C5    SING  N  N   8  
9SP  C4   C3    SING  N  N   9  
9SP  C10  O10   DOUB  N  N  10  
9SP  C5   C6    SING  N  N  11  
9SP  C3   C2    SING  N  N  12  
9SP  C3   FAI   SING  N  N  13  
9SP  C6   O6    SING  N  N  14  
9SP  C6   C7    SING  N  N  15  
9SP  C2   O6    SING  N  N  16  
9SP  C2   FAJ   SING  N  N  17  
9SP  C8   C7    SING  N  N  18  
9SP  C8   C9    SING  N  N  19  
9SP  C7   O7    SING  N  N  20  
9SP  C9   O9    SING  N  N  21  
9SP  O1B  HO1B  SING  N  N  22  
9SP  C3   H32   SING  N  N  23  
9SP  C4   H4    SING  N  N  24  
9SP  O4   HO4   SING  N  N  25  
9SP  C6   H6    SING  N  N  26  
9SP  C7   H7    SING  N  N  27  
9SP  C8   H8    SING  N  N  28  
9SP  C8   H8A   SING  N  N  29  
9SP  C9   H92   SING  N  N  30  
9SP  C9   H91   SING  N  N  31  
9SP  O9   HO9   SING  N  N  32  
9SP  O7   HO7   SING  N  N  33  
9SP  C5   H5    SING  N  N  34  
9SP  N5   HN5   SING  N  N  35  
9SP  C11  H111  SING  N  N  36  
9SP  C11  H113  SING  N  N  37  
9SP  C11  H112  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9SP  SMILES            ACDLabs               12.01  "OC(C1(OC(C(O)CCO)C(C(C1F)O)NC(=O)C)F)=O"  
9SP  InChI             InChI                 1.03   "InChI=1S/C11H17F2NO7/c1-4(16)14-6-7(18)9(12)11(13,10(19)20)21-8(6)5(17)2-3-15/h5-9,15,17-18H,2-3H2,1H3,(H,14,16)(H,19,20)/t5-,6-,7-,8+,9-,11-/m1/s1"  
9SP  InChIKey          InChI                 1.03   SVILRGMXTMNWJP-XYLHZXCYSA-N  
9SP  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)N[C@@H]1[C@@H](O)[C@@H](F)[C@@](F)(O[C@H]1[C@H](O)CCO)C(O)=O"  
9SP  SMILES            CACTVS                3.385  "CC(=O)N[CH]1[CH](O)[CH](F)[C](F)(O[CH]1[CH](O)CCO)C(O)=O"  
9SP  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(=O)N[C@@H]1[C@H]([C@H]([C@@](O[C@H]1[C@@H](CCO)O)(C(=O)O)F)F)O"  
9SP  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(=O)NC1C(C(C(OC1C(CCO)O)(C(=O)O)F)F)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9SP  "SYSTEMATIC NAME"  ACDLabs               12.01  
;(2R,3R,4R,5R,6R)-5-(acetylamino)-6-[(1R)-1,3-dihydroxypropyl]-2,3-difluoro-4-hydroxytetrahydro-2H-pyran-2-carboxylic
acid (non-preferred name)
;
  
9SP  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  
;(2~{R},3~{R},4~{R},5~{R},6~{R})-5-acetamido-6-[(1~{R})-1,3-bis(oxidanyl)propyl]-2,3-bis(fluoranyl)-4-oxidanyl-oxane-2-c
arboxylic acid
;
  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
9SP  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
9SP  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
9SP  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  ketose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9SP  "Create component"          2017-06-07  RCSB  
9SP  "Initial release"           2018-02-21  RCSB  
9SP  "Other modification"        2020-07-03  RCSB  
9SP  "Modify name"               2020-07-17  RCSB  
9SP  "Modify synonyms"           2020-07-17  RCSB  
9SP  "Modify internal type"      2020-07-17  RCSB  
9SP  "Modify linking type"       2020-07-17  RCSB  
9SP  "Modify atom id"            2020-07-17  RCSB  
9SP  "Modify component atom id"  2020-07-17  RCSB  
9SP  "Modify leaving atom flag"  2020-07-17  RCSB  
##
