data_DGP
#

_chem_comp.id                                   DGP
_chem_comp.name                                 "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H14 N5 O7 P"
_chem_comp.mon_nstd_parent_comp_id              DG
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2019-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        DCG
_chem_comp.formula_weight                       347.221
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DGP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DGP  P       P       P  0  1  N  N  N  47.712  3.277  6.013  -5.025  -0.790   0.346  P       DGP   1  
DGP  OP1     O1P     O  0  1  N  N  N  48.568  2.714  7.146  -6.036   0.152  -0.184  OP1     DGP   2  
DGP  OP2     O2P     O  0  1  N  N  N  46.675  2.318  5.637  -5.526  -1.375   1.760  OP2     DGP   3  
DGP  OP3     O3P     O  0  1  N  Y  N  47.145  4.706  6.410  -4.821  -2.001  -0.695  OP3     DGP   4  
DGP  "O5'"   "O5'"   O  0  1  N  N  N  48.694  3.629  4.865  -3.627  -0.017   0.550  "O5'"   DGP   5  
DGP  "C5'"   "C5'"   C  0  1  N  N  N  50.013  4.115  4.980  -2.976   0.703  -0.498  "C5'"   DGP   6  
DGP  "C4'"   "C4'"   C  0  1  N  N  R  50.720  3.618  3.739  -1.678   1.314   0.033  "C4'"   DGP   7  
DGP  "O4'"   "O4'"   O  0  1  N  N  N  51.973  4.220  3.532  -0.730   0.278   0.372  "O4'"   DGP   8  
DGP  "C3'"   "C3'"   C  0  1  N  N  S  50.750  2.213  3.301  -0.955   2.114  -1.081  "C3'"   DGP   9  
DGP  "O3'"   "O3'"   O  0  1  N  N  N  50.023  1.972  2.080  -1.444   3.455  -1.145  "O3'"   DGP  10  
DGP  "C2'"   "C2'"   C  0  1  N  N  N  52.232  1.935  3.101   0.516   2.084  -0.600  "C2'"   DGP  11  
DGP  "C1'"   "C1'"   C  0  1  N  N  R  52.787  3.365  2.795   0.573   0.883   0.365  "C1'"   DGP  12  
DGP  N9      N9      N  0  1  Y  N  N  54.239  3.510  2.987   1.569  -0.084  -0.103  N9      DGP  13  
DGP  C8      C8      C  0  1  Y  N  N  55.117  3.925  1.994   1.328  -1.176  -0.886  C8      DGP  14  
DGP  N7      N7      N  0  1  Y  N  N  56.359  3.867  2.330   2.440  -1.813  -1.109  N7      DGP  15  
DGP  C5      C5      C  0  1  Y  N  N  56.337  3.298  3.602   3.457  -1.171  -0.485  C5      DGP  16  
DGP  C6      C6      C  0  1  N  N  N  57.429  3.015  4.485   4.850  -1.400  -0.380  C6      DGP  17  
DGP  O6      O6      O  0  1  N  N  N  58.624  3.119  4.261   5.369  -2.356  -0.930  O6      DGP  18  
DGP  N1      N1      N  0  1  N  N  N  56.961  2.523  5.697   5.590  -0.532   0.345  N1      DGP  19  
DGP  C2      C2      C  0  1  N  N  N  55.631  2.328  6.020   4.999   0.534   0.955  C2      DGP  20  
DGP  N2      N2      N  0  1  N  N  N  55.416  1.806  7.211   5.776   1.399   1.684  N2      DGP  21  
DGP  N3      N3      N  0  1  N  N  N  54.611  2.605  5.221   3.707   0.758   0.865  N3      DGP  22  
DGP  C4      C4      C  0  1  Y  N  N  55.044  3.089  4.011   2.911  -0.056   0.161  C4      DGP  23  
DGP  HOP2    HOP2    H  0  0  N  N  N  46.750  1.541  6.178  -6.364  -1.854   1.712  HOP2    DGP  24  
DGP  HOP3    HOP3    H  0  0  N  Y  N  47.449  4.937  7.280  -4.171  -2.658  -0.411  HOP3    DGP  25  
DGP  "H5'"   "H5'1"  H  0  1  N  N  N  50.026  5.214  5.028  -2.749   0.024  -1.319  "H5'"   DGP  26  
DGP  "H5''"  "H5'2"  H  0  0  N  N  N  50.497  3.731  5.890  -3.632   1.498  -0.855  "H5''"  DGP  27  
DGP  "H4'"   "H4'"   H  0  1  N  N  N  49.925  3.971  3.066  -1.878   1.949   0.896  "H4'"   DGP  28  
DGP  "H3'"   "H3'"   H  0  1  N  N  N  50.263  1.558  4.039  -1.059   1.618  -2.046  "H3'"   DGP  29  
DGP  "HO3'"  "HO3'"  H  0  0  N  Y  N  50.081  1.051  1.853  -1.022   3.995  -1.827  "HO3'"  DGP  30  
DGP  "H2'"   "H2'1"  H  0  1  N  N  N  52.695  1.494  3.996   1.190   1.929  -1.442  "H2'"   DGP  31  
DGP  "H2''"  "H2'2"  H  0  0  N  N  N  52.414  1.234  2.273   0.765   3.007  -0.075  "H2''"  DGP  32  
DGP  "H1'"   "H1'"   H  0  1  N  N  N  52.728  3.617  1.726   0.829   1.225   1.368  "H1'"   DGP  33  
DGP  H8      H8      H  0  1  N  N  N  54.787  4.267  1.024   0.359  -1.467  -1.263  H8      DGP  34  
DGP  HN1     HN1     H  0  1  N  N  N  57.641  2.291  6.392   6.546  -0.668   0.431  HN1     DGP  35  
DGP  HN21    HN21    H  0  0  N  N  N  54.481  1.618  7.513   6.731   1.248   1.759  HN21    DGP  36  
DGP  HN22    HN22    H  0  0  N  N  N  56.187  1.598  7.812   5.370   2.162   2.124  HN22    DGP  37  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DGP  P      OP1     DOUB  N  N   1  
DGP  P      OP2     SING  N  N   2  
DGP  P      OP3     SING  N  N   3  
DGP  P      "O5'"   SING  N  N   4  
DGP  OP2    HOP2    SING  N  N   5  
DGP  OP3    HOP3    SING  N  N   6  
DGP  "O5'"  "C5'"   SING  N  N   7  
DGP  "C5'"  "C4'"   SING  N  N   8  
DGP  "C5'"  "H5'"   SING  N  N   9  
DGP  "C5'"  "H5''"  SING  N  N  10  
DGP  "C4'"  "O4'"   SING  N  N  11  
DGP  "C4'"  "C3'"   SING  N  N  12  
DGP  "C4'"  "H4'"   SING  N  N  13  
DGP  "O4'"  "C1'"   SING  N  N  14  
DGP  "C3'"  "O3'"   SING  N  N  15  
DGP  "C3'"  "C2'"   SING  N  N  16  
DGP  "C3'"  "H3'"   SING  N  N  17  
DGP  "O3'"  "HO3'"  SING  N  N  18  
DGP  "C2'"  "C1'"   SING  N  N  19  
DGP  "C2'"  "H2'"   SING  N  N  20  
DGP  "C2'"  "H2''"  SING  N  N  21  
DGP  "C1'"  N9      SING  N  N  22  
DGP  "C1'"  "H1'"   SING  N  N  23  
DGP  N9     C8      SING  Y  N  24  
DGP  N9     C4      SING  Y  N  25  
DGP  C8     N7      DOUB  Y  N  26  
DGP  C8     H8      SING  N  N  27  
DGP  N7     C5      SING  Y  N  28  
DGP  C5     C6      SING  N  N  29  
DGP  C5     C4      DOUB  Y  N  30  
DGP  C6     O6      DOUB  N  N  31  
DGP  C6     N1      SING  N  N  32  
DGP  N1     C2      SING  N  N  33  
DGP  N1     HN1     SING  N  N  34  
DGP  C2     N2      SING  N  N  35  
DGP  C2     N3      DOUB  N  N  36  
DGP  N2     HN21    SING  N  N  37  
DGP  N2     HN22    SING  N  N  38  
DGP  N3     C4      SING  N  N  39  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DGP  SMILES            ACDLabs               12.01  "O=P(O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)CC3O"  
DGP  SMILES_CANONICAL  CACTVS                3.370  "NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3"  
DGP  SMILES            CACTVS                3.370  "NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3"  
DGP  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)N=C(NC2=O)N"  
DGP  SMILES            "OpenEye OEToolkits"  1.7.0  "c1nc2c(n1C3CC(C(O3)COP(=O)(O)O)O)N=C(NC2=O)N"  
DGP  InChI             InChI                 1.03   "InChI=1S/C10H14N5O7P/c11-10-13-8-7(9(17)14-10)12-3-15(8)6-1-4(16)5(22-6)2-21-23(18,19)20/h3-6,16H,1-2H2,(H2,18,19,20)(H3,11,13,14,17)/t4-,5+,6+/m0/s1"  
DGP  InChIKey          InChI                 1.03   LTFMZDNNPPEQNG-KVQBGUIXSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DGP  "SYSTEMATIC NAME"  ACDLabs               12.01  "2'-deoxy-5'-guanylic acid"  
DGP  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "[(2R,3S,5R)-5-(2-azanyl-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DGP  "Create component"     1999-07-08  RCSB  
DGP  "Modify descriptor"    2011-06-04  RCSB  
DGP  "Modify linking type"  2019-03-01  RCSB  
##
