data_DRP
# 
_chem_comp.id                                    DRP 
_chem_comp.name                                  "2-DEOXYRIBOFURANOSYL-PYRIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H14 N O6 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2001-06-25 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        275.195 
_chem_comp.one_letter_code                       N 
_chem_comp.three_letter_code                     DRP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DRP P      P    P 0 1 N N N 26.407 18.687 27.102 4.581  -4.208 2.354 P      DRP 1  
DRP O1P    O1P  O 0 1 N N N 27.004 17.913 25.973 4.705  -5.662 2.004 O1P    DRP 2  
DRP O2P    O2P  O 0 1 N N N 27.199 18.974 28.331 4.410  -3.887 3.929 O2P    DRP 3  
DRP "O5'"  O5*  O 0 1 N N N 25.889 20.051 26.496 3.329  -3.444 1.668 "O5'"  DRP 4  
DRP C1     C1   C 0 1 Y N N 21.140 21.127 25.418 -1.069 -1.322 2.936 C1     DRP 5  
DRP C2     C2   C 0 1 Y N N 20.660 20.286 26.428 -2.438 -1.128 3.030 C2     DRP 6  
DRP N3     N3   N 0 1 Y N N 19.659 19.428 26.238 -3.112 -1.037 4.198 N3     DRP 7  
DRP C4     C4   C 0 1 Y N N 19.057 19.332 25.050 -2.375 -1.147 5.326 C4     DRP 8  
DRP C5     C5   C 0 1 Y N N 19.470 20.138 23.975 -1.004 -1.342 5.341 C5     DRP 9  
DRP C6     C6   C 0 1 Y N N 20.529 21.045 24.163 -0.346 -1.430 4.119 C6     DRP 10 
DRP "C2'"  C2*  C 0 1 N N N 22.371 22.665 27.070 0.128  -0.067 1.088 "C2'"  DRP 11 
DRP "C5'"  C5*  C 0 1 N N N 25.132 20.954 27.264 3.141  -2.068 1.947 "C5'"  DRP 12 
DRP "C4'"  C4*  C 0 1 N N R 24.542 22.007 26.361 1.914  -1.583 1.196 "C4'"  DRP 13 
DRP "O4'"  O4*  O 0 1 N N N 23.533 21.392 25.520 0.754  -2.299 1.648 "O4'"  DRP 14 
DRP "C1'"  C1*  C 0 1 N N R 22.295 22.074 25.683 -0.384 -1.414 1.591 "C1'"  DRP 15 
DRP "C3'"  C3*  C 0 1 N N S 23.819 23.116 27.118 1.601  -0.115 1.426 "C3'"  DRP 16 
DRP "O3'"  O3*  O 0 1 N N N 23.999 24.369 26.438 2.350  0.734  0.582 "O3'"  DRP 17 
DRP O3P    O3P  O 0 1 N Y N ?      ?      ?      5.842  -3.292 1.923 O3P    DRP 18 
DRP HOP2   2HOP H 0 0 N N N 28.120 19.035 28.107 5.025  -4.307 4.568 HOP2   DRP 19 
DRP H2     H2   H 0 1 N N N 21.121 20.335 27.404 -3.056 -1.037 2.141 H2     DRP 20 
DRP H4     H4   H 0 1 N N N 18.247 18.630 24.914 -2.935 -1.072 6.252 H4     DRP 21 
DRP H5     H5   H 0 1 N N N 18.980 20.062 23.016 -0.460 -1.424 6.275 H5     DRP 22 
DRP H6     H6   H 0 1 N N N 20.866 21.670 23.349 0.730  -1.582 4.098 H6     DRP 23 
DRP "H2'1" 1H2* H 0 0 N N N 22.092 21.965 27.872 -0.000 0.001  0.000 "H2'1" DRP 24 
DRP "H2'2" 2H2* H 0 0 N N N 21.668 23.500 27.208 -0.381 0.801  1.520 "H2'2" DRP 25 
DRP "H5'1" 1H5* H 0 0 N N N 25.780 21.433 28.013 3.000  -1.936 3.021 "H5'1" DRP 26 
DRP "H5'2" 2H5* H 0 0 N N N 24.322 20.413 27.775 4.023  -1.513 1.623 "H5'2" DRP 27 
DRP "H4'"  H4*  H 0 1 N N N 25.386 22.436 25.802 2.051  -1.795 0.129 "H4'"  DRP 28 
DRP "H1'"  H1*  H 0 1 N N N 22.113 22.887 24.964 -1.110 -1.836 0.888 "H1'"  DRP 29 
DRP "H3'"  H3*  H 0 1 N N N 24.183 23.272 28.144 1.765  0.175  2.471 "H3'"  DRP 30 
DRP H3T    H3T  H 0 1 N Y N 23.152 24.773 26.288 3.266  0.418  0.615 H3T    DRP 31 
DRP HOP3   3HOP H 0 0 N N N -0.380 0.492  0.718  6.748  -3.598 2.142 HOP3   DRP 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DRP P     O1P    DOUB N N 1  
DRP P     O2P    SING N N 2  
DRP P     "O5'"  SING N N 3  
DRP P     O3P    SING N N 4  
DRP O2P   HOP2   SING N N 5  
DRP "O5'" "C5'"  SING N N 6  
DRP C1    C2     DOUB Y N 7  
DRP C1    C6     SING Y N 8  
DRP C1    "C1'"  SING N N 9  
DRP C2    N3     SING Y N 10 
DRP C2    H2     SING N N 11 
DRP N3    C4     DOUB Y N 12 
DRP C4    C5     SING Y N 13 
DRP C4    H4     SING N N 14 
DRP C5    C6     DOUB Y N 15 
DRP C5    H5     SING N N 16 
DRP C6    H6     SING N N 17 
DRP "C2'" "C1'"  SING N N 18 
DRP "C2'" "C3'"  SING N N 19 
DRP "C2'" "H2'1" SING N N 20 
DRP "C2'" "H2'2" SING N N 21 
DRP "C5'" "C4'"  SING N N 22 
DRP "C5'" "H5'1" SING N N 23 
DRP "C5'" "H5'2" SING N N 24 
DRP "C4'" "O4'"  SING N N 25 
DRP "C4'" "C3'"  SING N N 26 
DRP "C4'" "H4'"  SING N N 27 
DRP "O4'" "C1'"  SING N N 28 
DRP "C1'" "H1'"  SING N N 29 
DRP "C3'" "O3'"  SING N N 30 
DRP "C3'" "H3'"  SING N N 31 
DRP "O3'" H3T    SING N N 32 
DRP O3P   HOP3   SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DRP SMILES           ACDLabs              10.04 "O=P(OCC2OC(c1cccnc1)CC2O)(O)O"                                                                                              
DRP SMILES_CANONICAL CACTVS               3.341 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)c2cccnc2"                                                                              
DRP SMILES           CACTVS               3.341 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)c2cccnc2"                                                                                   
DRP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(cnc1)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O"                                                                             
DRP SMILES           "OpenEye OEToolkits" 1.5.0 "c1cc(cnc1)C2CC(C(O2)COP(=O)(O)O)O"                                                                                          
DRP InChI            InChI                1.03  "InChI=1S/C10H14NO6P/c12-8-4-9(7-2-1-3-11-5-7)17-10(8)6-16-18(13,14)15/h1-3,5,8-10,12H,4,6H2,(H2,13,14,15)/t8-,9+,10+/m0/s1" 
DRP InChIKey         InChI                1.03  PPHVLYPPVUJOAT-IVZWLZJFSA-N                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DRP "SYSTEMATIC NAME" ACDLabs              10.04 "(1R)-1,4-anhydro-2-deoxy-5-O-phosphono-1-pyridin-3-yl-D-erythro-pentitol"     
DRP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-pyridin-3-yl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DRP "Create component"  2001-06-25 RCSB 
DRP "Modify descriptor" 2011-06-04 RCSB 
# 
