data_EDP
#

_chem_comp.id                                   EDP
_chem_comp.name                                 "5-ethyl-5-[(2R)-pentan-2-yl]-2-thioxodihydropyrimidine-4,6(1H,5H)-dione"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H18 N2 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Thiopental
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-04-05
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       242.338
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    EDP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3RD0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EDP  C1    C1    C  0  1  N  N  N  34.495  -0.226  34.980  -0.288  -0.579   0.107  C1    EDP   1  
EDP  C2    C2    C  0  1  N  N  N  34.354   1.131  34.340   0.140   0.652   0.883  C2    EDP   2  
EDP  N3    N3    N  0  1  N  N  N  34.758   1.362  33.084   1.411   1.079   0.726  N3    EDP   3  
EDP  C4    C4    C  0  1  N  N  N  35.316   0.413  32.326   2.274   0.451  -0.081  C4    EDP   4  
EDP  N5    N5    N  0  1  N  N  N  35.498  -0.825  32.790   1.989  -0.638  -0.804  N5    EDP   5  
EDP  C6    C6    C  0  1  N  N  N  35.143  -1.185  34.027   0.771  -1.209  -0.779  C6    EDP   6  
EDP  O7    O7    O  0  1  N  N  N  35.340  -2.363  34.398   0.526  -2.197  -1.439  O7    EDP   7  
EDP  O8    O8    O  0  1  N  N  N  33.849   2.081  34.975  -0.632   1.231   1.618  O8    EDP   8  
EDP  S9    S9    S  0  1  N  N  N  35.774   0.765  30.838   3.858   1.089  -0.197  S9    EDP   9  
EDP  C12   C12   C  0  1  N  N  N  35.392  -0.138  36.210  -0.759  -1.635   1.109  C12   EDP  10  
EDP  C13   C13   C  0  1  N  N  N  34.670  -0.548  37.477   0.410  -2.042   2.008  C13   EDP  11  
EDP  C14   C14   C  0  1  N  N  R  33.115  -0.799  35.337  -1.479  -0.197  -0.774  C14   EDP  12  
EDP  C15   C15   C  0  1  N  N  N  32.582  -1.709  34.233  -1.085   0.961  -1.691  C15   EDP  13  
EDP  C16   C16   C  0  1  N  N  N  32.087   0.272  35.696  -2.651   0.230   0.112  C16   EDP  14  
EDP  C17   C17   C  0  1  N  N  N  30.682  -0.297  35.866  -3.881   0.493  -0.760  C17   EDP  15  
EDP  C18   C18   C  0  1  N  N  N  29.774   0.133  34.731  -5.052   0.920   0.126  C18   EDP  16  
EDP  HN3   HN3   H  0  1  N  N  N  34.638   2.277  32.700   1.707   1.864   1.212  HN3   EDP  17  
EDP  HN5   HN5   H  0  1  N  N  N  35.915  -1.508  32.190   2.681  -1.025  -1.364  HN5   EDP  18  
EDP  H12   H12   H  0  1  N  N  N  36.252  -0.808  36.065  -1.562  -1.222   1.720  H12   EDP  19  
EDP  H12A  H12A  H  0  0  N  N  N  35.732   0.902  36.322  -1.125  -2.509   0.571  H12A  EDP  20  
EDP  H13   H13   H  0  1  N  N  N  35.356  -0.468  38.333   1.212  -2.455   1.397  H13   EDP  21  
EDP  H13A  H13A  H  0  0  N  N  N  33.806   0.114  37.637   0.776  -1.168   2.547  H13A  EDP  22  
EDP  H13B  H13B  H  0  0  N  N  N  34.323  -1.588  37.381   0.073  -2.794   2.722  H13B  EDP  23  
EDP  H14   H14   H  0  1  N  N  N  33.271  -1.401  36.244  -1.775  -1.055  -1.378  H14   EDP  24  
EDP  H15   H15   H  0  1  N  N  N  31.595  -2.099  34.523  -0.713   1.791  -1.090  H15   EDP  25  
EDP  H15A  H15A  H  0  0  N  N  N  32.489  -1.136  33.299  -0.305   0.632  -2.378  H15A  EDP  26  
EDP  H15B  H15B  H  0  0  N  N  N  33.278  -2.547  34.081  -1.956   1.287  -2.260  H15B  EDP  27  
EDP  H16   H16   H  0  1  N  N  N  32.390   0.741  36.644  -2.875  -0.562   0.827  H16   EDP  28  
EDP  H16A  H16A  H  0  0  N  N  N  32.065   1.018  34.888  -2.387   1.140   0.651  H16A  EDP  29  
EDP  H17   H17   H  0  1  N  N  N  30.742  -1.395  35.878  -3.657   1.285  -1.474  H17   EDP  30  
EDP  H17A  H17A  H  0  0  N  N  N  30.263   0.068  36.815  -4.145  -0.417  -1.298  H17A  EDP  31  
EDP  H18   H18   H  0  1  N  N  N  28.771  -0.292  34.882  -4.788   1.830   0.665  H18   EDP  32  
EDP  H18A  H18A  H  0  0  N  N  N  29.707   1.231  34.711  -5.928   1.107  -0.495  H18A  EDP  33  
EDP  H18B  H18B  H  0  0  N  N  N  30.185  -0.227  33.776  -5.276   0.128   0.841  H18B  EDP  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EDP  C6   C1    SING  N  N   1  
EDP  C2   C1    SING  N  N   2  
EDP  C1   C14   SING  N  N   3  
EDP  C1   C12   SING  N  N   4  
EDP  N3   C2    SING  N  N   5  
EDP  C2   O8    DOUB  N  N   6  
EDP  C4   N3    SING  N  N   7  
EDP  N3   HN3   SING  N  N   8  
EDP  S9   C4    DOUB  N  N   9  
EDP  C4   N5    SING  N  N  10  
EDP  N5   C6    SING  N  N  11  
EDP  N5   HN5   SING  N  N  12  
EDP  C6   O7    DOUB  N  N  13  
EDP  C12  C13   SING  N  N  14  
EDP  C12  H12   SING  N  N  15  
EDP  C12  H12A  SING  N  N  16  
EDP  C13  H13   SING  N  N  17  
EDP  C13  H13A  SING  N  N  18  
EDP  C13  H13B  SING  N  N  19  
EDP  C15  C14   SING  N  N  20  
EDP  C14  C16   SING  N  N  21  
EDP  C14  H14   SING  N  N  22  
EDP  C15  H15   SING  N  N  23  
EDP  C15  H15A  SING  N  N  24  
EDP  C15  H15B  SING  N  N  25  
EDP  C16  C17   SING  N  N  26  
EDP  C16  H16   SING  N  N  27  
EDP  C16  H16A  SING  N  N  28  
EDP  C18  C17   SING  N  N  29  
EDP  C17  H17   SING  N  N  30  
EDP  C17  H17A  SING  N  N  31  
EDP  C18  H18   SING  N  N  32  
EDP  C18  H18A  SING  N  N  33  
EDP  C18  H18B  SING  N  N  34  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EDP  SMILES            ACDLabs               12.01  "O=C1NC(=S)NC(=O)C1(C(C)CCC)CC"  
EDP  SMILES_CANONICAL  CACTVS                3.370  "CCC[C@@H](C)C1(CC)C(=O)NC(=S)NC1=O"  
EDP  SMILES            CACTVS                3.370  "CCC[CH](C)C1(CC)C(=O)NC(=S)NC1=O"  
EDP  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "CCC[C@@H](C)C1(C(=O)NC(=S)NC1=O)CC"  
EDP  SMILES            "OpenEye OEToolkits"  1.7.0  "CCCC(C)C1(C(=O)NC(=S)NC1=O)CC"  
EDP  InChI             InChI                 1.03   "InChI=1S/C11H18N2O2S/c1-4-6-7(3)11(5-2)8(14)12-10(16)13-9(11)15/h7H,4-6H2,1-3H3,(H2,12,13,14,15,16)/t7-/m1/s1"  
EDP  InChIKey          InChI                 1.03   IUJDSEJGGMCXSG-SSDOTTSWSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
EDP  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-ethyl-5-[(2R)-pentan-2-yl]-2-thioxodihydropyrimidine-4,6(1H,5H)-dione"  
EDP  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "5-ethyl-5-[(2R)-pentan-2-yl]-2-sulfanylidene-1,3-diazinane-4,6-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
EDP  "Create component"   2011-04-05  RCSB  
EDP  "Modify descriptor"  2011-06-04  RCSB  
EDP  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     EDP
_pdbx_chem_comp_synonyms.name        Thiopental
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
