data_F5P
#

_chem_comp.id                                   F5P
_chem_comp.name                                 
;(2R,3R,4S,5R,6S)-3-(acetylamino)-5-amino-4-hydroxy-6-methyltetrahydro-2H-pyran-2-yl
[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen
diphosphate
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H28 N4 O15 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "UDP-4-amino-4,6-dideoxy-L-AltNAc"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-02-28
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       590.370
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    F5P
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6CI4
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
F5P  C13   C1   C  0  1  N  N  N  32.314  28.294  -1.093   2.759   2.273  -0.491  C13   F5P   1  
F5P  C15   C2   C  0  1  N  N  S  34.901  28.105  -1.440   5.128   2.476   0.325  C15   F5P   2  
F5P  C17   C3   C  0  1  N  N  R  35.224  30.329  -1.460   5.337   0.123   0.799  C17   F5P   3  
F5P  C21   C4   C  0  1  N  N  N  36.338  31.652   2.464   6.588  -3.562  -0.732  C21   F5P   4  
F5P  C22   C5   C  0  1  N  N  N  35.004  31.084   2.264   5.965  -2.621  -1.586  C22   F5P   5  
F5P  C02   C6   C  0  1  N  N  R  30.889  22.843   6.528  -7.157  -1.692   0.429  C02   F5P   6  
F5P  C03   C7   C  0  1  N  N  S  32.234  23.252   5.959  -6.233  -2.024  -0.746  C03   F5P   7  
F5P  C04   C8   C  0  1  N  N  N  33.231  23.676   7.003  -6.190  -3.540  -0.948  C04   F5P   8  
F5P  C06   C9   C  0  1  N  N  R  31.244  23.964   3.928  -4.839  -0.127  -0.284  C06   F5P   9  
F5P  C14   C10  C  0  1  N  N  R  33.493  28.864  -1.861   3.762   1.805   0.566  C14   F5P  10  
F5P  C16   C11  C  0  1  N  N  R  35.835  28.908  -1.825   6.104   1.291   0.127  C16   F5P  11  
F5P  C19   C12  C  0  1  N  N  N  36.915  31.327  -0.027   6.363  -2.066   1.049  C19   F5P  12  
F5P  C23   C13  C  0  1  N  N  N  34.630  30.604   0.941   5.566  -1.435  -1.078  C23   F5P  13  
F5P  C32   C14  C  0  1  N  N  R  29.854  23.531   4.403  -5.707   0.281   0.911  C32   F5P  14  
F5P  C34   C15  C  0  1  N  N  N  27.811  24.827   5.286  -4.194   0.233   2.820  C34   F5P  15  
F5P  C35   C16  C  0  1  N  N  N  27.286  26.084   5.994  -3.664  -0.417   4.072  C35   F5P  16  
F5P  C37   C17  C  0  1  N  N  S  29.932  22.506   5.460  -7.148  -0.178   0.665  C37   F5P  17  
F5P  N01   N1   N  0  1  N  N  N  31.246  21.661   7.326  -8.523  -2.132   0.119  N01   F5P  18  
F5P  N18   N2   N  0  1  N  N  N  35.552  30.725  -0.194   5.770  -1.163   0.248  N18   F5P  19  
F5P  N20   N3   N  0  1  N  N  N  37.234  31.803   1.361   6.765  -3.258   0.570  N20   F5P  20  
F5P  N33   N4   N  0  1  N  N  N  29.243  24.728   5.057  -5.193  -0.351   2.128  N33   F5P  21  
F5P  O05   O1   O  0  1  N  N  N  32.042  24.403   5.054  -4.917  -1.543  -0.466  O05   F5P  22  
F5P  O07   O2   O  0  1  N  N  N  31.132  25.001   3.077  -3.483   0.248  -0.038  O07   F5P  23  
F5P  O09   O3   O  0  1  N  N  N  33.701  25.123   2.657  -2.188  -0.647  -2.144  O09   F5P  24  
F5P  O10   O4   O  0  1  N  N  N  32.114  26.301   1.023  -1.064   1.131  -0.567  O10   F5P  25  
F5P  O12   O5   O  0  1  N  N  N  32.557  28.521   0.322   1.472   1.724  -0.201  O12   F5P  26  
F5P  O24   O6   O  0  1  N  N  N  36.706  32.034   3.520   6.956  -4.638  -1.167  O24   F5P  27  
F5P  O25   O7   O  0  1  N  N  N  37.664  31.423  -0.902   6.529  -1.806   2.225  O25   F5P  28  
F5P  O26   O8   O  0  1  N  N  N  33.713  30.117  -1.580   3.959   0.385   0.458  O26   F5P  29  
F5P  O27   O9   O  0  1  N  N  N  36.125  28.784  -3.269   7.345   1.536   0.792  O27   F5P  30  
F5P  O28   O10  O  0  1  N  N  N  34.967  26.806  -2.083   5.508   3.257   1.460  O28   F5P  31  
F5P  O29   O11  O  0  1  N  N  N  32.308  28.152   2.869  -0.204   3.572  -1.032  O29   F5P  32  
F5P  O30   O12  O  0  1  N  N  N  30.238  28.033   1.308   0.462   1.639  -2.513  O30   F5P  33  
F5P  O31   O13  O  0  1  N  N  N  32.227  23.735   1.202  -3.031   1.730  -2.031  O31   F5P  34  
F5P  O36   O14  O  0  1  N  N  N  27.114  23.952   4.933  -3.722   1.282   2.434  O36   F5P  35  
F5P  O38   O15  O  0  1  N  N  N  30.333  21.230   4.881  -7.673   0.488  -0.485  O38   F5P  36  
F5P  P08   P1   P  0  1  N  N  N  32.329  25.012   1.976  -2.454   0.639  -1.213  P08   F5P  37  
F5P  P11   P2   P  0  1  N  N  N  31.706  27.804   1.497   0.173   2.008  -1.109  P11   F5P  38  
F5P  H132  H1   H  0  0  N  N  N  31.387  28.800  -1.400   2.701   3.361  -0.479  H132  F5P  39  
F5P  H131  H2   H  0  0  N  N  N  32.225  27.215  -1.290   3.084   1.936  -1.475  H131  F5P  40  
F5P  H151  H3   H  0  0  N  N  N  34.887  27.977  -0.348   5.095   3.097  -0.570  H151  F5P  41  
F5P  H171  H4   H  0  0  N  N  N  35.552  31.058  -2.215   5.478   0.143   1.880  H171  F5P  42  
F5P  H221  H5   H  0  0  N  N  N  34.307  31.022   3.086   5.811  -2.848  -2.631  H221  F5P  43  
F5P  H021  H6   H  0  0  N  N  N  30.491  23.642   7.170  -6.804  -2.202   1.325  H021  F5P  44  
F5P  H031  H7   H  0  0  N  N  N  32.650  22.407   5.390  -6.610  -1.547  -1.651  H031  F5P  45  
F5P  H043  H8   H  0  0  N  N  N  33.406  22.845   7.703  -7.194  -3.907  -1.161  H043  F5P  46  
F5P  H042  H9   H  0  0  N  N  N  34.178  23.950   6.515  -5.532  -3.776  -1.785  H042  F5P  47  
F5P  H041  H10  H  0  0  N  N  N  32.838  24.543   7.554  -5.813  -4.016  -0.044  H041  F5P  48  
F5P  H061  H11  H  0  0  N  N  N  31.731  23.104   3.444  -5.198   0.375  -1.183  H061  F5P  49  
F5P  H141  H12  H  0  0  N  N  N  33.336  28.697  -2.937   3.397   2.054   1.562  H141  F5P  50  
F5P  H161  H13  H  0  0  N  N  N  36.764  28.778  -1.251   6.264   1.092  -0.933  H161  F5P  51  
F5P  H231  H14  H  0  0  N  N  N  33.660  30.152   0.793   5.090  -0.705  -1.715  H231  F5P  52  
F5P  H321  H15  H  0  0  N  N  N  29.244  23.188   3.554  -5.684   1.364   1.025  H321  F5P  53  
F5P  H352  H16  H  0  0  N  N  N  26.194  26.015   6.103  -4.207  -1.343   4.258  H352  F5P  54  
F5P  H353  H17  H  0  0  N  N  N  27.749  26.165   6.989  -2.604  -0.636   3.947  H353  F5P  55  
F5P  H351  H18  H  0  0  N  N  N  27.540  26.973   5.398  -3.799   0.259   4.917  H351  F5P  56  
F5P  H371  H19  H  0  0  N  N  N  28.934  22.392   5.909  -7.760   0.058   1.536  H371  F5P  57  
F5P  H1    H20  H  0  1  N  N  N  31.895  21.924   8.040  -8.554  -3.128  -0.043  H1    F5P  58  
F5P  H012  H21  H  0  0  N  N  N  30.422  21.282   7.748  -9.164  -1.865   0.851  H012  F5P  59  
F5P  H201  H23  H  0  0  N  N  N  38.116  32.247   1.521   7.191  -3.898   1.162  H201  F5P  60  
F5P  H331  H24  H  0  0  N  N  N  29.835  25.481   5.345  -5.570  -1.190   2.436  H331  F5P  61  
F5P  H2    H25  H  0  1  N  N  N  34.220  24.354   2.452  -1.810  -1.402  -1.673  H2    F5P  62  
F5P  H271  H26  H  0  0  N  N  N  36.488  27.924  -3.447   7.861   2.257   0.408  H271  F5P  63  
F5P  H281  H27  H  0  0  N  N  N  35.776  26.372  -1.840   6.374   3.679   1.375  H281  F5P  64  
F5P  H3    H28  H  0  1  N  N  N  31.625  28.484   3.440  -0.406   3.884  -0.140  H3    F5P  65  
F5P  H381  H29  H  0  0  N  N  N  30.382  20.573   5.565  -8.584   0.244  -0.699  H381  F5P  66  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
F5P  O27  C16   SING  N  N   1  
F5P  O28  C15   SING  N  N   2  
F5P  C14  O26   SING  N  N   3  
F5P  C14  C15   SING  N  N   4  
F5P  C14  C13   SING  N  N   5  
F5P  C16  C17   SING  N  N   6  
F5P  C16  C15   SING  N  N   7  
F5P  O26  C17   SING  N  N   8  
F5P  C17  N18   SING  N  N   9  
F5P  C13  O12   SING  N  N  10  
F5P  O25  C19   DOUB  N  N  11  
F5P  N18  C19   SING  N  N  12  
F5P  N18  C23   SING  N  N  13  
F5P  C19  N20   SING  N  N  14  
F5P  O12  P11   SING  N  N  15  
F5P  C23  C22   DOUB  N  N  16  
F5P  O10  P11   SING  N  N  17  
F5P  O10  P08   SING  N  N  18  
F5P  O31  P08   DOUB  N  N  19  
F5P  O30  P11   DOUB  N  N  20  
F5P  N20  C21   SING  N  N  21  
F5P  P11  O29   SING  N  N  22  
F5P  P08  O09   SING  N  N  23  
F5P  P08  O07   SING  N  N  24  
F5P  C22  C21   SING  N  N  25  
F5P  C21  O24   DOUB  N  N  26  
F5P  O07  C06   SING  N  N  27  
F5P  C06  C32   SING  N  N  28  
F5P  C06  O05   SING  N  N  29  
F5P  C32  N33   SING  N  N  30  
F5P  C32  C37   SING  N  N  31  
F5P  O38  C37   SING  N  N  32  
F5P  O36  C34   DOUB  N  N  33  
F5P  O05  C03   SING  N  N  34  
F5P  N33  C34   SING  N  N  35  
F5P  C34  C35   SING  N  N  36  
F5P  C37  C02   SING  N  N  37  
F5P  C03  C02   SING  N  N  38  
F5P  C03  C04   SING  N  N  39  
F5P  C02  N01   SING  N  N  40  
F5P  C13  H132  SING  N  N  41  
F5P  C13  H131  SING  N  N  42  
F5P  C15  H151  SING  N  N  43  
F5P  C17  H171  SING  N  N  44  
F5P  C22  H221  SING  N  N  45  
F5P  C02  H021  SING  N  N  46  
F5P  C03  H031  SING  N  N  47  
F5P  C04  H043  SING  N  N  48  
F5P  C04  H042  SING  N  N  49  
F5P  C04  H041  SING  N  N  50  
F5P  C06  H061  SING  N  N  51  
F5P  C14  H141  SING  N  N  52  
F5P  C16  H161  SING  N  N  53  
F5P  C23  H231  SING  N  N  54  
F5P  C32  H321  SING  N  N  55  
F5P  C35  H352  SING  N  N  56  
F5P  C35  H353  SING  N  N  57  
F5P  C35  H351  SING  N  N  58  
F5P  C37  H371  SING  N  N  59  
F5P  N01  H1    SING  N  N  60  
F5P  N01  H012  SING  N  N  61  
F5P  N20  H201  SING  N  N  62  
F5P  N33  H331  SING  N  N  63  
F5P  O09  H2    SING  N  N  64  
F5P  O27  H271  SING  N  N  65  
F5P  O28  H281  SING  N  N  66  
F5P  O29  H3    SING  N  N  67  
F5P  O38  H381  SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
F5P  SMILES            ACDLabs               12.01  "C(OP(OP(OC1C(NC(C)=O)C(C(N)C(C)O1)O)(O)=O)(O)=O)C3C(C(C(N2C(NC(=O)C=C2)=O)O3)O)O"  
F5P  InChI             InChI                 1.03   "InChI=1S/C17H28N4O15P2/c1-6-10(18)13(25)11(19-7(2)22)16(33-6)35-38(30,31)36-37(28,29)32-5-8-12(24)14(26)15(34-8)21-4-3-9(23)20-17(21)27/h3-4,6,8,10-16,24-26H,5,18H2,1-2H3,(H,19,22)(H,28,29)(H,30,31)(H,20,23,27)/t6-,8+,10-,11+,12+,13-,14+,15+,16+/m0/s1"  
F5P  InChIKey          InChI                 1.03   FUUMLYWEEZBCQR-NAGKVERXSA-N  
F5P  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H]1O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@H](NC(C)=O)[C@@H](O)[C@H]1N"  
F5P  SMILES            CACTVS                3.385  "C[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH](NC(C)=O)[CH](O)[CH]1N"  
F5P  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C[C@H]1[C@@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)NC(=O)C)O)N"  
F5P  SMILES            "OpenEye OEToolkits"  2.0.6  "CC1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)NC(=O)C)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
F5P  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2R,3R,4S,5R,6S)-3-(acetylamino)-5-amino-4-hydroxy-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)"  
F5P  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "[(2~{R},3~{R},4~{S},5~{R},6~{S})-3-acetamido-5-azanyl-6-methyl-4-oxidanyl-oxan-2-yl] [[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
F5P  "Create component"  2018-02-28  RCSB  
F5P  "Modify synonyms"   2018-03-05  RCSB  
F5P  "Initial release"   2018-10-17  RCSB  
F5P  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     F5P
_pdbx_chem_comp_synonyms.name        "UDP-4-amino-4,6-dideoxy-L-AltNAc"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
