data_GLP
#

_chem_comp.id                                   GLP
_chem_comp.name                                 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H14 N O8 P"
_chem_comp.mon_nstd_parent_comp_id              PA1
_chem_comp.pdbx_synonyms                        
;GLUCOSAMINE 6-PHOSPHATE; 6-O-phosphono-alpha-D-glucosamine; 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucose;
2-amino-2-deoxy-6-O-phosphono-D-glucose; 2-amino-2-deoxy-6-O-phosphono-glucose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       259.151
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GLP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1MOQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  GLP  "GLUCOSAMINE 6-PHOSPHATE"                        PDB  ?  
2  GLP  6-O-phosphono-alpha-D-glucosamine                PDB  ?  
3  GLP  2-amino-2-deoxy-6-O-phosphono-alpha-D-glucose    PDB  ?  
4  GLP  2-amino-2-deoxy-6-O-phosphono-D-glucose          PDB  ?  
5  GLP  2-amino-2-deoxy-6-O-phosphono-glucose            PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GLP  C1    C1    C  0  1  N  N  S  28.601  16.111  -4.414   1.596   0.171   2.086  C1    GLP   1  
GLP  C2    C2    C  0  1  N  N  R  28.891  15.432  -3.091   0.588   0.557   3.171  C2    GLP   2  
GLP  C3    C3    C  0  1  N  N  R  28.469  16.331  -1.941  -0.743  -0.147   2.892  C3    GLP   3  
GLP  C4    C4    C  0  1  N  N  S  29.146  17.683  -2.019  -1.174   0.169   1.455  C4    GLP   4  
GLP  C5    C5    C  0  1  N  N  R  28.852  18.308  -3.399  -0.033  -0.187   0.500  C5    GLP   5  
GLP  C6    C6    C  0  1  N  N  N  29.779  19.521  -3.592  -0.468   0.097  -0.938  C6    GLP   6  
GLP  O1    O1    O  0  1  N  Y  N  27.210  16.267  -4.555   1.768  -1.247   2.081  O1    GLP   7  
GLP  N2    N2    N  0  1  N  N  N  28.212  14.167  -3.035   1.097   0.143   4.485  N2    GLP   8  
GLP  O3    O3    O  0  1  N  N  N  28.873  15.709  -0.704  -1.740   0.317   3.805  O3    GLP   9  
GLP  O4    O4    O  0  1  N  N  N  28.690  18.599  -1.045  -2.334  -0.595   1.121  O4    GLP  10  
GLP  O5    O5    O  0  1  N  N  N  29.146  17.392  -4.435   1.118   0.594   0.810  O5    GLP  11  
GLP  O6    O6    O  0  1  N  N  N  31.138  19.041  -3.744   0.593  -0.242  -1.833  O6    GLP  12  
GLP  P     P     P  0  1  N  N  N  32.401  19.889  -3.182   0.069   0.080  -3.320  P     GLP  13  
GLP  O1P   O1P   O  0  1  N  N  N  32.431  21.182  -3.906  -0.265   1.518  -3.424  O1P   GLP  14  
GLP  O2P   O2P   O  0  1  N  N  N  33.552  19.003  -3.386   1.221  -0.280  -4.385  O2P   GLP  15  
GLP  O3P   O3P   O  0  1  N  N  N  32.152  20.228  -1.726  -1.242  -0.800  -3.630  O3P   GLP  16  
GLP  H1    H1    H  0  1  N  N  N  29.036  15.485  -5.227   2.552   0.651   2.293  H1    GLP  17  
GLP  H2    H2    H  0  1  N  N  N  29.986  15.246  -3.000   0.438   1.637   3.162  H2    GLP  18  
GLP  H3    H3    H  0  1  N  N  N  27.364  16.473  -1.995  -0.616  -1.224   3.006  H3    GLP  19  
GLP  H4    H4    H  0  1  N  N  N  30.232  17.501  -1.845  -1.402   1.232   1.370  H4    GLP  20  
GLP  H5    H5    H  0  1  N  N  N  27.774  18.592  -3.437   0.207  -1.245   0.603  H5    GLP  21  
GLP  H61   H61   H  0  1  N  N  N  29.458  20.174  -4.436  -1.348  -0.499  -1.176  H61   GLP  22  
GLP  H62   H62   H  0  1  N  N  N  29.679  20.270  -2.772  -0.707   1.155  -1.043  H62   GLP  23  
GLP  HO1   HO1   H  0  1  N  Y  N  27.028  16.692  -5.384   2.409  -1.448   1.386  HO1   GLP  24  
GLP  HN21  HN21  H  0  0  N  N  N  28.407  13.709  -2.144   1.972   0.627   4.623  HN21  GLP  25  
GLP  HN22  HN22  H  0  0  N  Y  N  28.443  13.571  -3.830   0.454   0.505   5.173  HN22  GLP  26  
GLP  HO3   HO3   H  0  1  N  Y  N  28.609  16.271   0.015  -1.428   0.097   4.694  HO3   GLP  27  
GLP  HO4   HO4   H  0  1  N  Y  N  29.114  19.447  -1.093  -3.027  -0.340   1.746  HO4   GLP  28  
GLP  HOP2  HOP2  H  0  0  N  N  N  34.291  19.499  -3.056   0.868  -0.072  -5.261  HOP2  GLP  29  
GLP  HOP3  HOP3  H  0  0  N  N  N  32.891  20.724  -1.396  -0.981  -1.727  -3.552  HOP3  GLP  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GLP  C1   C2    SING  N  N   1  
GLP  C1   O1    SING  N  N   2  
GLP  C1   O5    SING  N  N   3  
GLP  C1   H1    SING  N  N   4  
GLP  C2   C3    SING  N  N   5  
GLP  C2   N2    SING  N  N   6  
GLP  C2   H2    SING  N  N   7  
GLP  C3   C4    SING  N  N   8  
GLP  C3   O3    SING  N  N   9  
GLP  C3   H3    SING  N  N  10  
GLP  C4   C5    SING  N  N  11  
GLP  C4   O4    SING  N  N  12  
GLP  C4   H4    SING  N  N  13  
GLP  C5   C6    SING  N  N  14  
GLP  C5   O5    SING  N  N  15  
GLP  C5   H5    SING  N  N  16  
GLP  C6   O6    SING  N  N  17  
GLP  C6   H61   SING  N  N  18  
GLP  C6   H62   SING  N  N  19  
GLP  O1   HO1   SING  N  N  20  
GLP  N2   HN21  SING  N  N  21  
GLP  N2   HN22  SING  N  N  22  
GLP  O3   HO3   SING  N  N  23  
GLP  O4   HO4   SING  N  N  24  
GLP  O6   P     SING  N  N  25  
GLP  P    O1P   DOUB  N  N  26  
GLP  P    O2P   SING  N  N  27  
GLP  P    O3P   SING  N  N  28  
GLP  O2P  HOP2  SING  N  N  29  
GLP  O3P  HOP3  SING  N  N  30  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GLP  SMILES            ACDLabs               10.04  "O=P(O)(O)OCC1OC(O)C(N)C(O)C1O"  
GLP  SMILES_CANONICAL  CACTVS                3.341  "N[C@H]1[C@@H](O)O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]1O"  
GLP  SMILES            CACTVS                3.341  "N[CH]1[CH](O)O[CH](CO[P](O)(O)=O)[CH](O)[CH]1O"  
GLP  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)N)O)O)OP(=O)(O)O"  
GLP  SMILES            "OpenEye OEToolkits"  1.5.0  "C(C1C(C(C(C(O1)O)N)O)O)OP(=O)(O)O"  
GLP  InChI             InChI                 1.03   "InChI=1S/C6H14NO8P/c7-3-5(9)4(8)2(15-6(3)10)1-14-16(11,12)13/h2-6,8-10H,1,7H2,(H2,11,12,13)/t2-,3-,4-,5-,6+/m1/s1"  
GLP  InChIKey          InChI                 1.03   XHMJOUIAFHJHBW-UKFBFLRUSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GLP  "SYSTEMATIC NAME"            ACDLabs               10.04  2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose  
GLP  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5R,6S)-5-amino-3,4,6-trihydroxy-oxan-2-yl]methyl dihydrogen phosphate"  
GLP  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    a-D-GlcpN6PO3  
#
_pdbx_chem_comp_related.comp_id            GLP
_pdbx_chem_comp_related.related_comp_id    PA1
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  GLP  C1    PA1  C1    "Carbohydrate core"  
 2  GLP  C2    PA1  C2    "Carbohydrate core"  
 3  GLP  C3    PA1  C3    "Carbohydrate core"  
 4  GLP  C4    PA1  C4    "Carbohydrate core"  
 5  GLP  C5    PA1  C5    "Carbohydrate core"  
 6  GLP  C6    PA1  C6    "Carbohydrate core"  
 7  GLP  N2    PA1  N2    "Carbohydrate core"  
 8  GLP  O1    PA1  O1    "Carbohydrate core"  
 9  GLP  O3    PA1  O3    "Carbohydrate core"  
10  GLP  O4    PA1  O4    "Carbohydrate core"  
11  GLP  O5    PA1  O5    "Carbohydrate core"  
12  GLP  O6    PA1  O6    "Carbohydrate core"  
13  GLP  H1    PA1  H1    "Carbohydrate core"  
14  GLP  H2    PA1  H2    "Carbohydrate core"  
15  GLP  H3    PA1  H3    "Carbohydrate core"  
16  GLP  H4    PA1  H4    "Carbohydrate core"  
17  GLP  H5    PA1  H5    "Carbohydrate core"  
18  GLP  H61   PA1  H61   "Carbohydrate core"  
19  GLP  H62   PA1  H62   "Carbohydrate core"  
20  GLP  HN21  PA1  HN21  "Carbohydrate core"  
21  GLP  HN22  PA1  HN22  "Carbohydrate core"  
22  GLP  HO1   PA1  HO1   "Carbohydrate core"  
23  GLP  HO3   PA1  HO3   "Carbohydrate core"  
24  GLP  HO4   PA1  HO4   "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
GLP  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
GLP  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
GLP  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
GLP  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GLP  "Create component"          1999-07-08  EBI   
GLP  "Modify descriptor"         2011-06-04  RCSB  
GLP  "Other modification"        2020-07-03  RCSB  
GLP  "Modify parent residue"     2020-07-17  RCSB  
GLP  "Modify name"               2020-07-17  RCSB  
GLP  "Modify synonyms"           2020-07-17  RCSB  
GLP  "Modify linking type"       2020-07-17  RCSB  
GLP  "Modify leaving atom flag"  2020-07-17  RCSB  
##
