data_GSP
# 
_chem_comp.id                                    GSP 
_chem_comp.name                                  "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H16 N5 O13 P3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        539.246 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GSP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1GIA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GSP PG     PG   P 0 1 N N N 37.221 -32.274 12.474 -1.026 -0.484 6.915  PG     GSP 1  
GSP O3B    O3B  O 0 1 N N N 37.514 -31.584 10.994 -1.015 -1.198 5.472  O3B    GSP 2  
GSP S1G    S1G  S 0 1 N N N 38.939 -32.825 13.146 -1.772 1.216  6.761  S1G    GSP 3  
GSP O2G    O2G  O 0 1 N N N 36.396 -31.275 13.244 -1.900 -1.363 7.942  O2G    GSP 4  
GSP O3G    O3G  O 0 1 N N N 36.476 -33.475 12.007 0.482  -0.360 7.463  O3G    GSP 5  
GSP PB     PB   P 0 1 N N S 36.539 -30.736 10.068 -0.128 -0.270 4.500  PB     GSP 6  
GSP O1B    O1B  O 0 1 N N N 36.062 -31.672 9.055  -0.735 1.076  4.415  O1B    GSP 7  
GSP O2B    O2B  O 0 1 N N N 35.474 -29.962 10.831 1.365  -0.150 5.089  O2B    GSP 8  
GSP PA     PA   P 0 1 N N S 37.707 -28.074 9.474  0.823  0.046  2.117  PA     GSP 9  
GSP O1A    O1A  O 0 1 N N N 36.469 -27.480 8.953  0.201  1.388  2.069  O1A    GSP 10 
GSP O2A    O2A  O 0 1 N N N 38.124 -27.746 10.879 2.300  0.161  2.746  O2A    GSP 11 
GSP O3A    O3A  O 0 1 N N N 37.499 -29.683 9.305  -0.074 -0.928 3.031  O3A    GSP 12 
GSP "O5'"  O5*  O 0 1 N N N 38.916 -27.799 8.441  0.919  -0.554 0.627  "O5'"  GSP 13 
GSP "C5'"  C5*  C 0 1 N N N 40.290 -27.982 8.746  1.724  0.350  -0.131 "C5'"  GSP 14 
GSP "C4'"  C4*  C 0 1 N N R 41.124 -26.932 8.112  1.857  -0.164 -1.566 "C4'"  GSP 15 
GSP "O4'"  O4*  O 0 1 N N N 40.934 -26.927 6.670  0.559  -0.236 -2.196 "O4'"  GSP 16 
GSP "C3'"  C3*  C 0 1 N N S 40.695 -25.538 8.607  2.659  0.836  -2.427 "C3'"  GSP 17 
GSP "O3'"  O3*  O 0 1 N N N 41.853 -24.747 8.895  4.023  0.424  -2.534 "O3'"  GSP 18 
GSP "C2'"  C2*  C 0 1 N N R 39.943 -24.929 7.393  1.965  0.783  -3.809 "C2'"  GSP 19 
GSP "O2'"  O2*  O 0 1 N N N 40.086 -23.530 7.331  2.881  0.339  -4.812 "O2'"  GSP 20 
GSP "C1'"  C1*  C 0 1 N N R 40.647 -25.588 6.205  0.825  -0.240 -3.615 "C1'"  GSP 21 
GSP N9     N9   N 0 1 Y N N 39.749 -25.681 5.036  -0.366 0.176  -4.358 N9     GSP 22 
GSP C8     C8   C 0 1 Y N N 38.509 -26.289 4.920  -1.361 0.989  -3.898 C8     GSP 23 
GSP N7     N7   N 0 1 Y N N 37.992 -26.231 3.746  -2.263 1.148  -4.822 N7     GSP 24 
GSP C5     C5   C 0 1 Y N N 39.028 -25.685 2.977  -1.902 0.451  -5.926 C5     GSP 25 
GSP C6     C6   C 0 1 N N N 39.130 -25.486 1.542  -2.480 0.259  -7.203 C6     GSP 26 
GSP O6     O6   O 0 1 N N N 38.359 -25.823 0.637  -3.539 0.788  -7.495 O6     GSP 27 
GSP N1     N1   N 0 1 N N N 40.312 -24.833 1.213  -1.827 -0.519 -8.093 N1     GSP 28 
GSP C2     C2   C 0 1 N N N 41.311 -24.534 2.099  -0.646 -1.110 -7.754 C2     GSP 29 
GSP N2     N2   N 0 1 N N N 42.330 -23.811 1.690  -0.008 -1.900 -8.677 N2     GSP 30 
GSP N3     N3   N 0 1 N N N 41.260 -24.824 3.393  -0.098 -0.940 -6.572 N3     GSP 31 
GSP C4     C4   C 0 1 Y N N 40.065 -25.317 3.772  -0.685 -0.177 -5.641 C4     GSP 32 
GSP HOG2   2HOG H 0 0 N N N 36.228 -31.670 14.091 -1.880 -0.901 8.791  HOG2   GSP 33 
GSP HOG3   3HOG H 0 0 N N N 36.308 -33.870 12.854 0.831  -1.260 7.528  HOG3   GSP 34 
GSP HOB2   2HOB H 0 0 N N N 34.891 -29.455 10.277 1.723  -1.047 5.128  HOB2   GSP 35 
GSP HOA2   2HOA H 0 0 N N N 38.924 -28.130 11.216 2.669  -0.732 2.759  HOA2   GSP 36 
GSP "H5'1" 1H5* H 0 0 N N N 40.462 -28.033 9.846  2.713  0.423  0.321  "H5'1" GSP 37 
GSP "H5'2" 2H5* H 0 0 N N N 40.638 -29.004 8.470  1.255  1.334  -0.140 "H5'2" GSP 38 
GSP "H4'"  H4*  H 0 1 N N N 42.184 -27.151 8.376  2.337  -1.142 -1.574 "H4'"  GSP 39 
GSP "H3'"  H3*  H 0 1 N N N 40.075 -25.578 9.533  2.596  1.839  -2.005 "H3'"  GSP 40 
GSP "HO3'" *HO3 H 0 0 N N N 41.588 -23.887 9.200  4.472  1.083  -3.080 "HO3'" GSP 41 
GSP "H2'"  H2*  H 0 1 N N N 38.843 -25.108 7.433  1.559  1.760  -4.070 "H2'"  GSP 42 
GSP "HO2'" *HO2 H 0 0 N N N 39.625 -23.157 6.588  3.598  0.987  -4.842 "HO2'" GSP 43 
GSP "H1'"  H1*  H 0 1 N N N 41.546 -25.010 5.887  1.146  -1.230 -3.938 "H1'"  GSP 44 
GSP H8     H8   H 0 1 N N N 37.956 -26.797 5.728  -1.395 1.433  -2.914 H8     GSP 45 
GSP HN1    HN1  H 0 1 N N N 40.458 -24.550 0.243  -2.204 -0.665 -8.975 HN1    GSP 46 
GSP HN21   1HN2 H 0 0 N N N 43.074 -23.588 2.350  0.834  -2.324 -8.451 HN21   GSP 47 
GSP HN22   2HN2 H 0 0 N N N 41.976 -22.942 1.288  -0.401 -2.039 -9.552 HN22   GSP 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GSP PG    O3B    SING N N 1  
GSP PG    S1G    DOUB N N 2  
GSP PG    O2G    SING N N 3  
GSP PG    O3G    SING N N 4  
GSP O3B   PB     SING N N 5  
GSP O2G   HOG2   SING N N 6  
GSP O3G   HOG3   SING N N 7  
GSP PB    O1B    DOUB N N 8  
GSP PB    O2B    SING N N 9  
GSP PB    O3A    SING N N 10 
GSP O2B   HOB2   SING N N 11 
GSP PA    O1A    DOUB N N 12 
GSP PA    O2A    SING N N 13 
GSP PA    O3A    SING N N 14 
GSP PA    "O5'"  SING N N 15 
GSP O2A   HOA2   SING N N 16 
GSP "O5'" "C5'"  SING N N 17 
GSP "C5'" "C4'"  SING N N 18 
GSP "C5'" "H5'1" SING N N 19 
GSP "C5'" "H5'2" SING N N 20 
GSP "C4'" "O4'"  SING N N 21 
GSP "C4'" "C3'"  SING N N 22 
GSP "C4'" "H4'"  SING N N 23 
GSP "O4'" "C1'"  SING N N 24 
GSP "C3'" "O3'"  SING N N 25 
GSP "C3'" "C2'"  SING N N 26 
GSP "C3'" "H3'"  SING N N 27 
GSP "O3'" "HO3'" SING N N 28 
GSP "C2'" "O2'"  SING N N 29 
GSP "C2'" "C1'"  SING N N 30 
GSP "C2'" "H2'"  SING N N 31 
GSP "O2'" "HO2'" SING N N 32 
GSP "C1'" N9     SING N N 33 
GSP "C1'" "H1'"  SING N N 34 
GSP N9    C8     SING Y N 35 
GSP N9    C4     SING Y N 36 
GSP C8    N7     DOUB Y N 37 
GSP C8    H8     SING N N 38 
GSP N7    C5     SING Y N 39 
GSP C5    C6     SING N N 40 
GSP C5    C4     DOUB Y N 41 
GSP C6    O6     DOUB N N 42 
GSP C6    N1     SING N N 43 
GSP N1    C2     SING N N 44 
GSP N1    HN1    SING N N 45 
GSP C2    N2     SING N N 46 
GSP C2    N3     DOUB N N 47 
GSP N2    HN21   SING N N 48 
GSP N2    HN22   SING N N 49 
GSP N3    C4     SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GSP SMILES           ACDLabs              10.04 "S=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O" 
GSP SMILES_CANONICAL CACTVS               3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=S)[C@@H](O)[C@H]3O" 
GSP SMILES           CACTVS               3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=S)[CH](O)[CH]3O" 
GSP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@](=O)(O)OP(=S)(O)O)O)O)N=C(NC2=O)N" 
GSP SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=S)(O)O)O)O)N=C(NC2=O)N" 
GSP InChI            InChI                1.03  
"InChI=1S/C10H16N5O13P3S/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(26-9)1-25-29(19,20)27-30(21,22)28-31(23,24)32/h2-3,5-6,9,16-17H,1H2,(H,19,20)(H,21,22)(H2,23,24,32)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1" 
GSP InChIKey         InChI                1.03  XOFLBQFBSOEHOG-UUOKFMHZSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GSP "SYSTEMATIC NAME" ACDLabs              10.04 "5'-O-[(S)-hydroxy{[(S)-hydroxy(thiophosphonooxy)phosphoryl]oxy}phosphoryl]guanosine"                                                               
GSP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] dihydroxyphosphinothioyl hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GSP "Create component"  1999-07-08 EBI  
GSP "Modify descriptor" 2011-06-04 RCSB 
# 
