data_LMP
# 
_chem_comp.id                                    LMP 
_chem_comp.name                                  
;(2~{S},3~{R},4~{S})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-(dimethylcarbamoy
l)pyrrolidin-3-yl]sulfanyl-3-methyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H27 N3 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Hydrolyzed Meropenem" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-03-18 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        401.478 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LMP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5AXO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LMP C1  C1  C 0 1 N N R N N N 10.377 -7.069  -6.404 2.150  1.092  -0.233 C1  LMP 1  
LMP C2  C2  C 0 1 N N S N N N 10.227 -5.535  -6.388 0.885  0.234  -0.478 C2  LMP 2  
LMP C3  C3  C 0 1 N N N N N N 8.848  -5.377  -5.786 1.242  -1.112 0.113  C3  LMP 3  
LMP O7A O1  O 0 1 N N N N N N 14.656 -6.562  -2.564 -5.842 1.522  -0.938 O7A LMP 4  
LMP C6A C4  C 0 1 N N N N N N 13.590 -6.815  -2.018 -5.583 0.571  -0.231 C6A LMP 5  
LMP N7A N1  N 0 1 N N N N N N 13.376 -7.953  -1.358 -6.442 0.199  0.739  N7A LMP 6  
LMP C9A C5  C 0 1 N N N N N N 12.240 -8.178  -0.466 -7.688 0.943  0.939  C9A LMP 7  
LMP C8A C6  C 0 1 N N N N N N 14.296 -9.081  -1.405 -6.130 -0.950 1.593  C8A LMP 8  
LMP C5A C7  C 0 1 N N S N N N 12.466 -5.815  -2.056 -4.302 -0.195 -0.437 C5A LMP 9  
LMP C2A C8  C 0 1 N N N N N N 11.555 -6.070  -3.251 -3.227 0.271  0.576  C2A LMP 10 
LMP N3A N2  N 0 1 N N N N N N 12.989 -4.435  -2.200 -3.729 0.109  -1.765 N3A LMP 11 
LMP C4A C9  C 0 1 N N N N N N 12.020 -3.665  -3.009 -2.260 0.155  -1.644 C4A LMP 12 
LMP C1A C10 C 0 1 N N S N N N 11.184 -4.694  -3.776 -1.916 -0.110 -0.160 C1A LMP 13 
LMP S21 S1  S 0 1 N N N N N N 11.515 -4.615  -5.503 -0.545 0.947  0.381  S21 LMP 14 
LMP C31 C11 C 0 1 N N N N N N 8.251  -4.048  -5.630 0.506  -2.369 -0.161 C31 LMP 15 
LMP O31 O2  O 0 1 N N N N N N 9.019  -3.062  -5.751 -0.454 -2.360 -0.904 O31 LMP 16 
LMP O32 O3  O 0 1 N N N N N N 6.965  -3.903  -5.310 0.901  -3.521 0.414  O32 LMP 17 
LMP N4  N3  N 0 1 N N N N N N 8.246  -6.462  -5.529 2.258  -1.026 0.876  N4  LMP 18 
LMP C11 C12 C 0 1 N N N N N N 10.649 -7.568  -7.838 3.076  1.069  -1.451 C11 LMP 19 
LMP C5  C13 C 0 1 N N S N N N 9.097  -7.625  -5.709 2.782  0.342  0.963  C5  LMP 20 
LMP C6  C14 C 0 1 N N S N N N 8.241  -8.727  -6.369 4.307  0.336  0.840  C6  LMP 21 
LMP C61 C15 C 0 1 N N R N N N 7.642  -8.440  -7.766 4.725  -0.628 -0.273 C61 LMP 22 
LMP O62 O4  O 0 1 N N N N N N 7.382  -7.066  -8.084 4.105  -1.898 -0.061 O62 LMP 23 
LMP C62 C16 C 0 1 N N N N N N 6.326  -9.188  -8.001 6.246  -0.794 -0.259 C62 LMP 24 
LMP C7  C17 C 0 1 N N N N N N 9.091  -9.961  -6.450 4.791  1.724  0.510  C7  LMP 25 
LMP O71 O5  O 0 1 N N N N N N 8.891  -10.835 -7.281 4.041  2.666  0.617  O71 LMP 26 
LMP O72 O6  O 0 1 N N N N N N 9.997  -10.145 -5.521 6.054  1.915  0.098  O72 LMP 27 
LMP H1  H1  H 0 1 N N N N N N 11.243 -7.334  -5.780 1.886  2.114  0.038  H1  LMP 28 
LMP H2  H2  H 0 1 N N N N N N 10.228 -5.156  -7.421 0.685  0.142  -1.545 H2  LMP 29 
LMP H3  H3  H 0 1 N N N N N N 12.296 -9.194  -0.049 -8.476 0.505  0.326  H3  LMP 30 
LMP H4  H4  H 0 1 N N N N N N 12.266 -7.444  0.353  -7.976 0.894  1.989  H4  LMP 31 
LMP H5  H5  H 0 1 N N N N N N 11.303 -8.065  -1.031 -7.540 1.984  0.651  H5  LMP 32 
LMP H6  H6  H 0 1 N N N N N N 13.905 -9.900  -0.783 -5.574 -0.612 2.467  H6  LMP 33 
LMP H7  H7  H 0 1 N N N N N N 14.399 -9.427  -2.444 -7.056 -1.427 1.913  H7  LMP 34 
LMP H8  H8  H 0 1 N N N N N N 15.279 -8.768  -1.023 -5.527 -1.665 1.033  H8  LMP 35 
LMP H9  H9  H 0 1 N N N N N N 11.877 -5.893  -1.130 -4.480 -1.265 -0.336 H9  LMP 36 
LMP H10 H10 H 0 1 N N N N N N 10.654 -6.618  -2.938 -3.284 1.347  0.739  H10 LMP 37 
LMP H11 H11 H 0 1 N N N N N N 12.085 -6.646  -4.023 -3.317 -0.270 1.518  H11 LMP 38 
LMP H12 H12 H 0 1 N N N N N N 13.877 -4.454  -2.660 -4.089 0.980  -2.125 H12 LMP 39 
LMP H14 H14 H 0 1 N N N N N N 12.550 -3.005  -3.712 -1.811 -0.615 -2.272 H14 LMP 40 
LMP H15 H15 H 0 1 N N N N N N 11.374 -3.061  -2.355 -1.894 1.137  -1.943 H15 LMP 41 
LMP H16 H16 H 0 1 N N N N N N 10.111 -4.501  -3.632 -1.678 -1.162 -0.003 H16 LMP 42 
LMP H17 H17 H 0 1 N N N N N N 6.767  -2.980  -5.202 0.390  -4.314 0.205  H17 LMP 43 
LMP H18 H18 H 0 1 N N N N N N 10.753 -8.663  -7.832 2.728  1.795  -2.186 H18 LMP 44 
LMP H19 H19 H 0 1 N N N N N N 9.810  -7.283  -8.490 4.090  1.323  -1.141 H19 LMP 45 
LMP H20 H20 H 0 1 N N N N N N 11.577 -7.113  -8.214 3.071  0.073  -1.893 H20 LMP 46 
LMP H21 H21 H 0 1 N N N N N N 9.399  -7.993  -4.718 2.479  0.804  1.902  H21 LMP 47 
LMP H22 H22 H 0 1 N N N N N N 7.402  -8.940  -5.691 4.746  0.013  1.784  H22 LMP 48 
LMP H23 H23 H 0 1 N N N N N N 8.362  -8.827  -8.502 4.412  -0.227 -1.237 H23 LMP 49 
LMP H24 H24 H 0 1 N N N N N N 8.172  -6.555  -7.954 4.339  -2.314 0.780  H24 LMP 50 
LMP H25 H25 H 0 1 N N N N N N 6.464  -10.255 -7.772 6.559  -1.195 0.706  H25 LMP 51 
LMP H26 H26 H 0 1 N N N N N N 5.546  -8.771  -7.348 6.544  -1.480 -1.051 H26 LMP 52 
LMP H27 H27 H 0 1 N N N N N N 6.023  -9.075  -9.052 6.719  0.175  -0.420 H27 LMP 53 
LMP H28 H28 H 0 1 N N N N N N 10.400 -10.998 -5.635 6.318  2.824  -0.102 H28 LMP 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LMP O62 C61 SING N N 1  
LMP C62 C61 SING N N 2  
LMP C11 C1  SING N N 3  
LMP C61 C6  SING N N 4  
LMP O71 C7  DOUB N N 5  
LMP C7  C6  SING N N 6  
LMP C7  O72 SING N N 7  
LMP C1  C2  SING N N 8  
LMP C1  C5  SING N N 9  
LMP C2  C3  SING N N 10 
LMP C2  S21 SING N N 11 
LMP C6  C5  SING N N 12 
LMP C3  C31 SING N N 13 
LMP C3  N4  DOUB N N 14 
LMP O31 C31 DOUB N N 15 
LMP C5  N4  SING N N 16 
LMP C31 O32 SING N N 17 
LMP S21 C1A SING N N 18 
LMP C1A C2A SING N N 19 
LMP C1A C4A SING N N 20 
LMP C2A C5A SING N N 21 
LMP C4A N3A SING N N 22 
LMP O7A C6A DOUB N N 23 
LMP N3A C5A SING N N 24 
LMP C5A C6A SING N N 25 
LMP C6A N7A SING N N 26 
LMP C8A N7A SING N N 27 
LMP N7A C9A SING N N 28 
LMP C1  H1  SING N N 29 
LMP C2  H2  SING N N 30 
LMP C9A H3  SING N N 31 
LMP C9A H4  SING N N 32 
LMP C9A H5  SING N N 33 
LMP C8A H6  SING N N 34 
LMP C8A H7  SING N N 35 
LMP C8A H8  SING N N 36 
LMP C5A H9  SING N N 37 
LMP C2A H10 SING N N 38 
LMP C2A H11 SING N N 39 
LMP N3A H12 SING N N 40 
LMP C4A H14 SING N N 41 
LMP C4A H15 SING N N 42 
LMP C1A H16 SING N N 43 
LMP O32 H17 SING N N 44 
LMP C11 H18 SING N N 45 
LMP C11 H19 SING N N 46 
LMP C11 H20 SING N N 47 
LMP C5  H21 SING N N 48 
LMP C6  H22 SING N N 49 
LMP C61 H23 SING N N 50 
LMP O62 H24 SING N N 51 
LMP C62 H25 SING N N 52 
LMP C62 H26 SING N N 53 
LMP C62 H27 SING N N 54 
LMP O72 H28 SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LMP InChI            InChI                1.03  "InChI=1S/C17H27N3O6S/c1-7-12(11(8(2)21)16(23)24)19-13(17(25)26)14(7)27-9-5-10(18-6-9)15(22)20(3)4/h7-12,14,18,21H,5-6H2,1-4H3,(H,23,24)(H,25,26)/t7-,8-,9+,10+,11-,12-,14+/m1/s1" 
LMP InChIKey         InChI                1.03  CDYPSIIDXKMBLV-CFINEGTKSA-N                                                                                                                                                        
LMP SMILES_CANONICAL CACTVS               3.385 "C[C@@H](O)[C@H]([C@@H]1N=C([C@@H](S[C@@H]2CN[C@@H](C2)C(=O)N(C)C)[C@@H]1C)C(O)=O)C(O)=O"                                                                                          
LMP SMILES           CACTVS               3.385 "C[CH](O)[CH]([CH]1N=C([CH](S[CH]2CN[CH](C2)C(=O)N(C)C)[CH]1C)C(O)=O)C(O)=O"                                                                                                       
LMP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C[C@H]1[C@@H](C(=N[C@H]1[C@@H]([C@@H](C)O)C(=O)O)C(=O)O)S[C@H]2C[C@H](NC2)C(=O)N(C)C"                                                                                             
LMP SMILES           "OpenEye OEToolkits" 2.0.4 "CC1C(C(=NC1C(C(C)O)C(=O)O)C(=O)O)SC2CC(NC2)C(=O)N(C)C"                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           LMP 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.4 
_pdbx_chem_comp_identifier.identifier        "(2~{S},3~{R},4~{S})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl-3-methyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LMP "Create component" 2016-03-18 PDBJ 
LMP "Initial release"  2016-05-11 RCSB 
LMP "Modify synonyms"  2020-06-05 PDBE 
LMP "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      LMP 
_pdbx_chem_comp_synonyms.name         "Hydrolyzed Meropenem" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            LMP 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               O31 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
