data_LTP
# 
_chem_comp.id                                    LTP 
_chem_comp.name                                  "4-amino-1-{2-deoxy-5-O-[(R)-hydroxy(phosphonooxy)phosphoryl]-beta-L-erythro-pentofuranosyl}pyrimidin-2(1H)-one" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C9 H15 N3 O10 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-12-14 
_chem_comp.pdbx_modified_date                    2014-08-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        387.177 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LTP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4I8U 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LTP OAE OAE O 0 1 N N N 0.935  -12.153 20.273 4.643  2.518  0.589  OAE LTP 1  
LTP PAF PAF P 0 1 N N N -0.313 -12.845 20.785 4.969  1.264  -0.367 PAF LTP 2  
LTP OAG OAG O 0 1 N N N -0.151 -13.578 22.091 5.434  1.799  -1.813 OAG LTP 3  
LTP OBB OBB O 0 1 N N N -1.064 -13.609 19.725 6.054  0.455  0.232  OBB LTP 4  
LTP OAH OAH O 0 1 N N N -1.290 -11.649 21.180 3.649  0.356  -0.530 OAH LTP 5  
LTP PAI PAI P 0 1 N N N -1.758 -10.642 20.041 2.886  -0.689 0.428  PAI LTP 6  
LTP OAJ OAJ O 0 1 N N N -0.639 -9.661  19.780 2.774  -0.119 1.790  OAJ LTP 7  
LTP OAK OAK O 0 1 N N N -3.075 -10.102 20.507 3.717  -2.067 0.489  OAK LTP 8  
LTP OAL OAL O 0 1 N N N -2.012 -11.585 18.730 1.413  -0.975 -0.156 OAL LTP 9  
LTP CAM CAM C 0 1 N N N -1.708 -11.178 17.380 0.449  -1.781 0.524  CAM LTP 10 
LTP CAN CAN C 0 1 N N S -2.957 -10.814 16.567 -0.836 -1.847 -0.303 CAN LTP 11 
LTP OAO OAO O 0 1 N N N -4.151 -11.250 17.217 -1.460 -0.546 -0.366 OAO LTP 12 
LTP CAP CAP C 0 1 N N R -2.988 -11.397 15.155 -1.878 -2.751 0.392  CAP LTP 13 
LTP O12 O12 O 0 1 N N N -2.649 -10.404 14.194 -1.867 -4.060 -0.182 O12 LTP 14 
LTP CAQ CAQ C 0 1 N N N -4.410 -11.835 14.924 -3.227 -2.049 0.120  CAQ LTP 15 
LTP CAR CAR C 0 1 N N S -5.133 -11.612 16.248 -2.840 -0.802 -0.707 CAR LTP 16 
LTP N1  N1  N 0 1 N N N -5.801 -12.871 16.562 -3.679 0.339  -0.332 N1  LTP 17 
LTP C2  C2  C 0 1 N N N -6.957 -13.164 15.951 -5.015 0.263  -0.475 C2  LTP 18 
LTP O2  O2  O 0 1 N N N -7.502 -12.373 15.143 -5.514 -0.758 -0.916 O2  LTP 19 
LTP C6  C6  C 0 1 N N N -5.171 -13.788 17.524 -3.102 1.469  0.164  C6  LTP 20 
LTP C5  C5  C 0 1 N N N -5.922 -15.028 17.703 -3.888 2.517  0.507  C5  LTP 21 
LTP C4  C4  C 0 1 N N N -7.117 -15.239 17.026 -5.284 2.408  0.340  C4  LTP 22 
LTP NAX NAX N 0 1 N N N -7.820 -16.389 17.211 -6.105 3.458  0.680  NAX LTP 23 
LTP N3  N3  N 0 1 N N N -7.573 -14.313 16.187 -5.801 1.286  -0.142 N3  LTP 24 
LTP H1  H1  H 0 1 N N N 1.034  -12.324 19.344 3.940  3.093  0.258  H1  LTP 25 
LTP H2  H2  H 0 1 N N N -0.564 -14.431 22.029 6.225  2.354  -1.791 H2  LTP 26 
LTP H3  H3  H 0 1 N N N -3.022 -9.156  20.579 3.829  -2.497 -0.369 H3  LTP 27 
LTP H4  H4  H 0 1 N N N -1.189 -12.005 16.873 0.846  -2.787 0.659  H4  LTP 28 
LTP H5  H5  H 0 1 N N N -1.047 -10.299 17.419 0.232  -1.343 1.499  H5  LTP 29 
LTP H6  H6  H 0 1 N N N -2.983 -9.718  16.474 -0.622 -2.214 -1.307 H6  LTP 30 
LTP H7  H7  H 0 1 N N N -2.311 -12.262 15.093 -1.684 -2.804 1.463  H7  LTP 31 
LTP H8  H8  H 0 1 N N N -1.753 -10.122 14.332 -2.503 -4.670 0.217  H8  LTP 32 
LTP H9  H9  H 0 1 N N N -4.872 -11.232 14.129 -3.887 -2.698 -0.454 H9  LTP 33 
LTP H10 H10 H 0 1 N N N -4.443 -12.898 14.644 -3.699 -1.753 1.057  H10 LTP 34 
LTP H11 H11 H 0 1 N N N -5.874 -10.808 16.127 -2.937 -1.010 -1.773 H11 LTP 35 
LTP H12 H12 H 0 1 N N N -4.250 -13.568 18.043 -2.030 1.528  0.283  H12 LTP 36 
LTP H13 H13 H 0 1 N N N -5.544 -15.790 18.369 -3.452 3.423  0.903  H13 LTP 37 
LTP H14 H14 H 0 1 N N N -8.677 -16.536 16.717 -5.725 4.276  1.036  H14 LTP 38 
LTP H15 H15 H 0 1 N N N -7.480 -17.087 17.841 -7.065 3.380  0.564  H15 LTP 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LTP O12 CAP SING N N 1  
LTP CAQ CAP SING N N 2  
LTP CAQ CAR SING N N 3  
LTP O2  C2  DOUB N N 4  
LTP CAP CAN SING N N 5  
LTP C2  N3  SING N N 6  
LTP C2  N1  SING N N 7  
LTP N3  C4  DOUB N N 8  
LTP CAR N1  SING N N 9  
LTP CAR OAO SING N N 10 
LTP N1  C6  SING N N 11 
LTP CAN OAO SING N N 12 
LTP CAN CAM SING N N 13 
LTP C4  NAX SING N N 14 
LTP C4  C5  SING N N 15 
LTP CAM OAL SING N N 16 
LTP C6  C5  DOUB N N 17 
LTP OAL PAI SING N N 18 
LTP OBB PAF DOUB N N 19 
LTP OAJ PAI DOUB N N 20 
LTP PAI OAK SING N N 21 
LTP PAI OAH SING N N 22 
LTP OAE PAF SING N N 23 
LTP PAF OAH SING N N 24 
LTP PAF OAG SING N N 25 
LTP OAE H1  SING N N 26 
LTP OAG H2  SING N N 27 
LTP OAK H3  SING N N 28 
LTP CAM H4  SING N N 29 
LTP CAM H5  SING N N 30 
LTP CAN H6  SING N N 31 
LTP CAP H7  SING N N 32 
LTP O12 H8  SING N N 33 
LTP CAQ H9  SING N N 34 
LTP CAQ H10 SING N N 35 
LTP CAR H11 SING N N 36 
LTP C6  H12 SING N N 37 
LTP C5  H13 SING N N 38 
LTP NAX H14 SING N N 39 
LTP NAX H15 SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LTP SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)CC2O"                                                                                                                    
LTP InChI            InChI                1.03  "InChI=1S/C9H15N3O10P2/c10-7-1-2-12(9(14)11-7)8-3-5(13)6(21-8)4-20-24(18,19)22-23(15,16)17/h1-2,5-6,8,13H,3-4H2,(H,18,19)(H2,10,11,14)(H2,15,16,17)/t5-,6+,8+/m1/s1" 
LTP InChIKey         InChI                1.03  FTDHDKPUHBLBTL-CHKWXVPMSA-N                                                                                                                                          
LTP SMILES_CANONICAL CACTVS               3.370 "NC1=NC(=O)N(C=C1)[C@@H]2C[C@@H](O)[C@H](CO[P](O)(=O)O[P](O)(O)=O)O2"                                                                                                
LTP SMILES           CACTVS               3.370 "NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(O)=O)O2"                                                                                                     
LTP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@H]([C@@H](O[C@@H]1N2C=CC(=NC2=O)N)COP(=O)(O)OP(=O)(O)O)O"                                                                                                      
LTP SMILES           "OpenEye OEToolkits" 1.7.6 "C1C(C(OC1N2C=CC(=NC2=O)N)COP(=O)(O)OP(=O)(O)O)O"                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LTP "SYSTEMATIC NAME" ACDLabs              12.01 "4-amino-1-{2-deoxy-5-O-[(R)-hydroxy(phosphonooxy)phosphoryl]-beta-L-erythro-pentofuranosyl}pyrimidin-2(1H)-one"     
LTP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2S,3R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methyl phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LTP "Create component" 2012-12-14 RCSB 
LTP "Initial release"  2014-08-27 RCSB 
# 
