data_NAP
#

_chem_comp.id                                   NAP
_chem_comp.name                                 "NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H28 N7 O17 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       743.405
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    NAP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1D4O
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NAP  PA    AP    P   0  1  N  N  R  17.174  26.134  12.040   -0.035  -0.972   0.719  PA    NAP   1  
NAP  O1A   AO1   O   0  1  N  N  N  16.048  25.314  12.500    0.490  -0.256   1.903  O1A   NAP   2  
NAP  O2A   AO2   O   0  1  N  N  N  18.478  26.114  12.670   -0.725  -2.349   1.187  O2A   NAP   3  
NAP  O5B   AO5*  O   0  1  N  N  N  17.317  25.889  10.437   -1.126  -0.051  -0.026  O5B   NAP   4  
NAP  C5B   AC5*  C   0  1  N  N  N  17.813  26.990   9.495   -2.109   0.297   0.952  C5B   NAP   5  
NAP  C4B   AC4*  C   0  1  N  N  R  17.962  26.155   8.345   -3.181   1.177   0.307  C4B   NAP   6  
NAP  O4B   AO4*  O   0  1  N  N  N  17.859  27.351   7.294   -3.920   0.416  -0.663  O4B   NAP   7  
NAP  C3B   AC3*  C   0  1  N  N  R  18.840  25.789   7.535   -4.181   1.655   1.377  C3B   NAP   8  
NAP  O3B   AO3*  O   0  1  N  N  N  18.208  24.597   7.839   -4.196   3.082   1.456  O3B   NAP   9  
NAP  C2B   AC2*  C   0  1  N  N  R  19.276  25.751   6.147   -5.550   1.124   0.876  C2B   NAP  10  
NAP  O2B   AO2*  O   0  1  N  N  N  18.883  24.739   5.481   -6.576   2.099   1.071  O2B   NAP  11  
NAP  C1B   AC1*  C   0  1  N  N  R  18.394  26.894   5.988   -5.279   0.901  -0.633  C1B   NAP  12  
NAP  N9A   AN9   N   0  1  Y  N  N  19.237  28.090   5.590   -6.196  -0.101  -1.183  N9A   NAP  13  
NAP  C8A   AC8   C   0  1  Y  N  N  20.466  28.637   6.011   -5.978  -1.445  -1.249  C8A   NAP  14  
NAP  N7A   AN7   N   0  1  Y  N  N  20.935  29.548   5.192   -7.000  -2.036  -1.795  N7A   NAP  15  
NAP  C5A   AC5   C   0  1  Y  N  N  20.003  29.624   4.173   -7.938  -1.111  -2.114  C5A   NAP  16  
NAP  C6A   AC6   C   0  1  Y  N  N  19.935  30.402   2.975   -9.210  -1.158  -2.708  C6A   NAP  17  
NAP  N6A   AN6   N   0  1  N  N  N  20.889  31.262   2.635   -9.759  -2.363  -3.112  N6A   NAP  18  
NAP  N1A   AN1   N   0  1  Y  N  N  18.841  30.230   2.153   -9.874  -0.019  -2.874  N1A   NAP  19  
NAP  C2A   AC2   C   0  1  Y  N  N  17.867  29.350   2.480   -9.358   1.135  -2.492  C2A   NAP  20  
NAP  N3A   AN3   N   0  1  Y  N  N  17.859  28.574   3.579   -8.171   1.227  -1.931  N3A   NAP  21  
NAP  C4A   AC4   C   0  1  Y  N  N  18.962  28.758   4.395   -7.435   0.141  -1.720  C4A   NAP  22  
NAP  O3    O3    O   0  1  N  N  N  16.458  27.566  12.208    1.175  -1.294  -0.293  O3    NAP  23  
NAP  PN    NP    P   0  1  N  N  N  15.216  28.068  13.153    2.390  -1.858   0.599  PN    NAP  24  
NAP  O1N   NO1   O   0  1  N  N  N  13.983  27.417  12.642    2.142  -3.348   0.925  O1N   NAP  25  
NAP  O2N   NO2   O  -1  1  N  N  N  15.308  29.554  13.093    2.481  -1.051   1.914  O2N   NAP  26  
NAP  O5D   NO5*  O   0  1  N  N  N  15.487  27.658  14.685    3.770  -1.710  -0.218  O5D   NAP  27  
NAP  C5D   NC5*  C   0  1  N  N  N  16.599  28.169  15.475    4.818  -2.114   0.665  C5D   NAP  28  
NAP  C4D   NC4*  C   0  1  N  N  R  17.395  26.968  16.025    6.164  -1.997  -0.053  C4D   NAP  29  
NAP  O4D   NO4*  O   0  1  N  N  N  18.653  27.366  16.614    6.466  -0.613  -0.332  O4D   NAP  30  
NAP  C3D   NC3*  C   0  1  N  N  S  16.694  26.193  17.167    7.310  -2.474   0.866  C3D   NAP  31  
NAP  O3D   NO3*  O   0  1  N  N  N  17.085  24.806  17.287    7.670  -3.822   0.559  O3D   NAP  32  
NAP  C2D   NC2*  C   0  1  N  N  R  17.093  26.936  18.393    8.478  -1.513   0.540  C2D   NAP  33  
NAP  O2D   NO2*  O   0  1  N  N  N  16.979  26.205  19.588    9.595  -2.239   0.025  O2D   NAP  34  
NAP  C1D   NC1*  C   0  1  N  N  R  18.569  27.243  18.038    7.895  -0.568  -0.534  C1D   NAP  35  
NAP  N1N   NN1   N   1  1  Y  N  N  19.125  28.361  18.811    8.395   0.795  -0.341  N1N   NAP  36  
NAP  C2N   NC2   C   0  1  Y  N  N  18.555  29.641  18.667    9.364   1.237  -1.116  C2N   NAP  37  
NAP  C3N   NC3   C   0  1  Y  N  N  19.141  30.683  19.465    9.869   2.527  -0.955  C3N   NAP  38  
NAP  C7N   NC7   C   0  1  N  N  N  18.652  32.050  19.414   10.961   3.021  -1.820  C7N   NAP  39  
NAP  O7N   NO7   O   0  1  N  N  N  19.161  32.943  20.102   11.430   2.299  -2.678  O7N   NAP  40  
NAP  N7N   NN7   N   0  1  N  N  N  17.622  32.390  18.616   11.437   4.272  -1.658  N7N   NAP  41  
NAP  C4N   NC4   C   0  1  Y  N  N  20.222  30.376  20.317    9.320   3.349   0.037  C4N   NAP  42  
NAP  C5N   NC5   C   0  1  Y  N  N  20.746  29.139  20.435    8.300   2.840   0.821  C5N   NAP  43  
NAP  C6N   NC6   C   0  1  Y  N  N  20.202  28.129  19.681    7.859   1.547   0.601  C6N   NAP  44  
NAP  P2B   AP2*  P   0  1  N  N  N  19.664  24.555   4.097   -7.765   1.370   1.875  P2B   NAP  45  
NAP  O1X   AOP1  O   0  1  N  N  N  21.117  24.360   4.404   -7.226   0.774   3.119  O1X   NAP  46  
NAP  O2X   AOP2  O   0  1  N  N  N  18.964  23.410   3.543   -8.903   2.447   2.246  O2X   NAP  47  
NAP  O3X   AOP3  O   0  1  N  N  N  19.391  25.798   3.381   -8.402   0.211   0.957  O3X   NAP  48  
NAP  HOA2  2HOA  H   0  0  N  N  N  19.207  26.645  12.372   -1.053  -2.783   0.387  HOA2  NAP  49  
NAP  H51A  AH51  H   0  0  N  N  N  17.176  27.899   9.389   -2.570  -0.610   1.343  H51A  NAP  50  
NAP  H52A  AH52  H   0  0  N  N  N  18.702  27.579   9.819   -1.633   0.843   1.767  H52A  NAP  51  
NAP  H4B   AH4*  H   0  1  N  N  N  17.494  25.243   8.784   -2.714   2.037  -0.175  H4B   NAP  52  
NAP  H3B   AH3*  H   0  1  N  N  N  19.753  26.421   7.625   -3.936   1.223   2.347  H3B   NAP  53  
NAP  HO3A  AHO3  H   0  0  N  N  N  18.875  24.318   7.223   -3.323   3.353   1.772  HO3A  NAP  54  
NAP  H2B   AH2*  H   0  1  N  N  N  20.353  25.734   5.862   -5.809   0.186   1.368  H2B   NAP  55  
NAP  H1B   AH1*  H   0  1  N  N  N  17.599  26.587   5.268   -5.364   1.839  -1.182  H1B   NAP  56  
NAP  H8A   AH8   H   0  1  N  N  N  21.025  28.369   6.923   -5.087  -1.946  -0.899  H8A   NAP  57  
NAP  H61A  AH61  H   0  0  N  N  N  20.840  31.816   1.780   -9.265  -3.187  -2.985  H61A  NAP  58  
NAP  H62A  AH62  H   0  0  N  N  N  21.774  30.755   2.625  -10.638  -2.382  -3.521  H62A  NAP  59  
NAP  H2A   AH2   H   0  1  N  N  N  17.008  29.257   1.793   -9.932   2.037  -2.646  H2A   NAP  60  
NAP  H51N  NH51  H   0  0  N  N  N  17.238  28.882  14.904    4.658  -3.148   0.970  H51N  NAP  61  
NAP  H52N  NH52  H   0  0  N  N  N  16.269  28.869  16.277    4.819  -1.472   1.546  H52N  NAP  62  
NAP  H4D   NH4*  H   0  1  N  N  N  17.508  26.330  15.117    6.152  -2.577  -0.976  H4D   NAP  63  
NAP  H3D   NH3*  H   0  1  N  N  N  15.595  26.147  16.979    7.022  -2.385   1.913  H3D   NAP  64  
NAP  HO3N  NHO3  H   0  0  N  N  N  16.654  24.330  17.987    8.387  -4.064   1.162  HO3N  NAP  65  
NAP  H2D   NH2*  H   0  1  N  N  N  16.445  27.817  18.610    8.766  -0.948   1.427  H2D   NAP  66  
NAP  HO2N  NHO2  H   0  0  N  N  N  17.233  26.679  20.370    9.874  -2.852   0.719  HO2N  NAP  67  
NAP  H1D   NH1*  H   0  1  N  N  N  19.235  26.404  18.346    8.149  -0.927  -1.532  H1D   NAP  68  
NAP  H2N   NH2   H   0  1  N  N  N  17.710  29.814  17.978    9.778   0.591  -1.876  H2N   NAP  69  
NAP  H71N  NH71  H   0  0  N  N  N  17.202  31.653  18.048   12.153   4.595  -2.226  H71N  NAP  70  
NAP  H72N  NH72  H   0  0  N  N  N  17.278  33.349  18.580   11.060   4.849  -0.976  H72N  NAP  71  
NAP  H4N   NH4   H   0  1  N  N  N  20.691  31.159  20.935    9.684   4.355   0.187  H4N   NAP  72  
NAP  H5N   NH5   H   0  1  N  N  N  21.589  28.959  21.123    7.853   3.445   1.596  H5N   NAP  73  
NAP  H6N   NH6   H   0  1  N  N  N  20.635  27.119  19.775    7.063   1.146   1.211  H6N   NAP  74  
NAP  HOP2  2HOP  H   0  0  N  N  N  19.427  23.300   2.721   -9.594   1.970   2.725  HOP2  NAP  75  
NAP  HOP3  3HOP  H   0  0  N  N  N  19.854  25.688   2.559   -8.740   0.640   0.160  HOP3  NAP  76  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NAP  PA   O1A   DOUB  N  N   1  
NAP  PA   O2A   SING  N  N   2  
NAP  PA   O5B   SING  N  N   3  
NAP  PA   O3    SING  N  N   4  
NAP  O2A  HOA2  SING  N  N   5  
NAP  O5B  C5B   SING  N  N   6  
NAP  C5B  C4B   SING  N  N   7  
NAP  C5B  H51A  SING  N  N   8  
NAP  C5B  H52A  SING  N  N   9  
NAP  C4B  O4B   SING  N  N  10  
NAP  C4B  C3B   SING  N  N  11  
NAP  C4B  H4B   SING  N  N  12  
NAP  O4B  C1B   SING  N  N  13  
NAP  C3B  O3B   SING  N  N  14  
NAP  C3B  C2B   SING  N  N  15  
NAP  C3B  H3B   SING  N  N  16  
NAP  O3B  HO3A  SING  N  N  17  
NAP  C2B  O2B   SING  N  N  18  
NAP  C2B  C1B   SING  N  N  19  
NAP  C2B  H2B   SING  N  N  20  
NAP  O2B  P2B   SING  N  N  21  
NAP  C1B  N9A   SING  N  N  22  
NAP  C1B  H1B   SING  N  N  23  
NAP  N9A  C8A   SING  Y  N  24  
NAP  N9A  C4A   SING  Y  N  25  
NAP  C8A  N7A   DOUB  Y  N  26  
NAP  C8A  H8A   SING  N  N  27  
NAP  N7A  C5A   SING  Y  N  28  
NAP  C5A  C6A   SING  Y  N  29  
NAP  C5A  C4A   DOUB  Y  N  30  
NAP  C6A  N6A   SING  N  N  31  
NAP  C6A  N1A   DOUB  Y  N  32  
NAP  N6A  H61A  SING  N  N  33  
NAP  N6A  H62A  SING  N  N  34  
NAP  N1A  C2A   SING  Y  N  35  
NAP  C2A  N3A   DOUB  Y  N  36  
NAP  C2A  H2A   SING  N  N  37  
NAP  N3A  C4A   SING  Y  N  38  
NAP  O3   PN    SING  N  N  39  
NAP  PN   O1N   DOUB  N  N  40  
NAP  PN   O2N   SING  N  N  41  
NAP  PN   O5D   SING  N  N  42  
NAP  O5D  C5D   SING  N  N  43  
NAP  C5D  C4D   SING  N  N  44  
NAP  C5D  H51N  SING  N  N  45  
NAP  C5D  H52N  SING  N  N  46  
NAP  C4D  O4D   SING  N  N  47  
NAP  C4D  C3D   SING  N  N  48  
NAP  C4D  H4D   SING  N  N  49  
NAP  O4D  C1D   SING  N  N  50  
NAP  C3D  O3D   SING  N  N  51  
NAP  C3D  C2D   SING  N  N  52  
NAP  C3D  H3D   SING  N  N  53  
NAP  O3D  HO3N  SING  N  N  54  
NAP  C2D  O2D   SING  N  N  55  
NAP  C2D  C1D   SING  N  N  56  
NAP  C2D  H2D   SING  N  N  57  
NAP  O2D  HO2N  SING  N  N  58  
NAP  C1D  N1N   SING  N  N  59  
NAP  C1D  H1D   SING  N  N  60  
NAP  N1N  C2N   SING  Y  N  61  
NAP  N1N  C6N   DOUB  Y  N  62  
NAP  C2N  C3N   DOUB  Y  N  63  
NAP  C2N  H2N   SING  N  N  64  
NAP  C3N  C7N   SING  N  N  65  
NAP  C3N  C4N   SING  Y  N  66  
NAP  C7N  O7N   DOUB  N  N  67  
NAP  C7N  N7N   SING  N  N  68  
NAP  N7N  H71N  SING  N  N  69  
NAP  N7N  H72N  SING  N  N  70  
NAP  C4N  C5N   DOUB  Y  N  71  
NAP  C4N  H4N   SING  N  N  72  
NAP  C5N  C6N   SING  Y  N  73  
NAP  C5N  H5N   SING  N  N  74  
NAP  C6N  H6N   SING  N  N  75  
NAP  P2B  O1X   DOUB  N  N  76  
NAP  P2B  O2X   SING  N  N  77  
NAP  P2B  O3X   SING  N  N  78  
NAP  O2X  HOP2  SING  N  N  79  
NAP  O3X  HOP3  SING  N  N  80  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NAP  SMILES_CANONICAL  CACTVS                3.341  "NC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P@@](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O"  
NAP  SMILES            CACTVS                3.341  "NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O"  
NAP  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)([O-])O[P@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N"  
NAP  SMILES            "OpenEye OEToolkits"  1.5.0  "c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N"  
NAP  InChI             InChI                 1.03   "InChI=1S/C21H28N7O17P3/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(44-46(33,34)35)14(30)11(43-21)6-41-48(38,39)45-47(36,37)40-5-10-13(29)15(31)20(42-10)27-3-1-2-9(4-27)18(23)32/h1-4,7-8,10-11,13-16,20-21,29-31H,5-6H2,(H7-,22,23,24,25,32,33,34,35,36,37,38,39)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1"  
NAP  InChIKey          InChI                 1.03   XJLXINKUBYWONI-NNYOXOHSSA-N  
#
_pdbx_chem_comp_identifier.comp_id          NAP
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.5.0
_pdbx_chem_comp_identifier.identifier       "[(2R,3S,4R,5R)-5-(3-aminocarbonylpyridin-1-ium-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-4-phosphonooxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NAP  "Create component"   1999-07-08  RCSB  
NAP  "Modify descriptor"  2011-06-04  RCSB  
NAP  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     NAP
_pdbx_chem_comp_synonyms.name        "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
