data_PAP
# 
_chem_comp.id                                    PAP 
_chem_comp.name                                  "3'-PHOSPHATE-ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H16 N5 O13 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        507.181 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PAP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1AFK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PAP PB     PB   P 0 1 N N N 9.258  6.812  2.645  -1.992 0.093  -5.676 PB     PAP 1  
PAP O1B    O1B  O 0 1 N N N 10.422 6.162  1.996  -2.266 -1.348 -5.484 O1B    PAP 2  
PAP O2B    O2B  O 0 1 N N N 8.945  6.260  4.012  -3.181 0.755  -6.536 O2B    PAP 3  
PAP O3B    O3B  O 0 1 N N N 8.067  7.007  1.764  -0.597 0.275  -6.459 O3B    PAP 4  
PAP PA     PA   P 0 1 N N R 10.289 9.766  3.240  -0.698 0.109  -3.438 PA     PAP 5  
PAP O1A    O1A  O 0 1 N N N 10.561 9.640  4.712  0.563  0.276  -4.192 O1A    PAP 6  
PAP O2A    O2A  O 0 1 N N N 9.823  11.130 2.790  -1.018 -1.459 -3.267 O2A    PAP 7  
PAP O3A    O3A  O 0 1 N N N 9.292  8.504  2.626  -1.901 0.817  -4.241 O3A    PAP 8  
PAP "O5'"  O5*  O 0 1 N N N 11.481 9.226  2.221  -0.549 0.787  -1.986 "O5'"  PAP 9  
PAP "C5'"  C5*  C 0 1 N N N 11.050 8.984  0.867  0.527  0.119  -1.326 "C5'"  PAP 10 
PAP "C4'"  C4*  C 0 1 N N R 11.886 9.754  -0.056 0.722  0.719  0.067  "C4'"  PAP 11 
PAP "O4'"  O4*  O 0 1 N N N 11.673 9.519  -1.454 -0.466 0.536  0.865  "O4'"  PAP 12 
PAP "C3'"  C3*  C 0 1 N N S 11.590 11.105 0.204  1.831  -0.037 0.830  "C3'"  PAP 13 
PAP "O3'"  O3*  O 0 1 N N N 12.911 11.729 -0.148 3.070  0.668  0.745  "O3'"  PAP 14 
PAP P      P    P 0 1 N N N 13.963 12.898 0.574  4.121  -0.320 0.030  P      PAP 15 
PAP O1     O1   O 0 1 N N N 14.966 13.216 -0.521 3.624  -0.675 -1.318 O1     PAP 16 
PAP O2     O2   O 0 1 N N N 13.100 14.071 1.018  5.547  0.415  -0.099 O2     PAP 17 
PAP O3     O3   O 0 1 N N N 14.472 12.027 1.692  4.285  -1.657 0.911  O3     PAP 18 
PAP "C2'"  C2*  C 0 1 N N R 10.395 11.134 -0.807 1.325  -0.071 2.292  "C2'"  PAP 19 
PAP "O2'"  O2*  O 0 1 N N N 9.930  12.472 -0.479 2.238  0.610  3.154  "O2'"  PAP 20 
PAP "C1'"  C1*  C 0 1 N N R 11.404 10.789 -1.995 -0.029 0.667  2.235  "C1'"  PAP 21 
PAP N9     N9   N 0 1 Y N N 11.162 10.379 -3.457 -0.993 0.035  3.140  N9     PAP 22 
PAP C8     C8   C 0 1 Y N N 12.127 10.402 -4.554 -1.830 -0.995 2.835  C8     PAP 23 
PAP N7     N7   N 0 1 Y N N 11.736 9.929  -5.752 -2.550 -1.307 3.873  N7     PAP 24 
PAP C5     C5   C 0 1 Y N N 10.380 9.561  -5.413 -2.216 -0.501 4.910  C5     PAP 25 
PAP C6     C6   C 0 1 Y N N 9.352  8.956  -6.172 -2.652 -0.370 6.240  C6     PAP 26 
PAP N6     N6   N 0 1 N N N 9.548  8.784  -7.418 -3.637 -1.200 6.747  N6     PAP 27 
PAP N1     N1   N 0 1 Y N N 8.150  8.660  -5.608 -2.092 0.564  7.001  N1     PAP 28 
PAP C2     C2   C 0 1 Y N N 7.987  8.988  -4.338 -1.152 1.360  6.525  C2     PAP 29 
PAP N3     N3   N 0 1 Y N N 8.819  9.573  -3.446 -0.717 1.278  5.285  N3     PAP 30 
PAP C4     C4   C 0 1 Y N N 10.034 9.831  -4.058 -1.218 0.373  4.450  C4     PAP 31 
PAP HOB2   2HOB H 0 0 N N N 8.199  6.676  4.427  -3.202 0.294  -7.386 HOB2   PAP 32 
PAP HOB3   3HOB H 0 0 N N N 7.321  7.423  2.179  -0.457 1.226  -6.563 HOB3   PAP 33 
PAP HOA2   2HOA H 0 0 N N N 9.651  11.209 1.859  -1.846 -1.523 -2.772 HOA2   PAP 34 
PAP "H5'1" 1H5* H 0 0 N N N 11.036 7.897  0.616  1.441  0.243  -1.907 "H5'1" PAP 35 
PAP "H5'2" 2H5* H 0 0 N N N 9.963  9.193  0.726  0.295  -0.941 -1.235 "H5'2" PAP 36 
PAP "H4'"  H4*  H 0 1 N N N 12.942 9.447  0.125  0.969  1.778  -0.008 "H4'"  PAP 37 
PAP "H3'"  H3*  H 0 1 N N N 11.294 11.581 1.167  1.941  -1.049 0.440  "H3'"  PAP 38 
PAP HO2    HO2  H 0 1 N N N 13.677 14.712 1.414  6.145  -0.209 -0.532 HO2    PAP 39 
PAP HO3    HO3  H 0 1 N N N 15.049 12.668 2.088  4.609  -1.382 1.779  HO3    PAP 40 
PAP "H2'"  H2*  H 0 1 N N N 9.459  10.537 -0.917 1.185  -1.100 2.624  "H2'"  PAP 41 
PAP "HO2'" *HO2 H 0 0 N N N 9.204  12.489 -1.092 1.873  0.557  4.047  "HO2'" PAP 42 
PAP "H1'"  H1*  H 0 1 N N N 11.989 11.721 -2.169 0.099  1.718  2.493  "H1'"  PAP 43 
PAP H8     H8   H 0 1 N N N 13.160 10.780 -4.477 -1.888 -1.482 1.872  H8     PAP 44 
PAP HN61   1HN6 H 0 0 N N N 8.806  8.347  -7.965 -3.926 -1.102 7.668  HN61   PAP 45 
PAP HN62   2HN6 H 0 0 N N N 10.413 8.259  -7.550 -4.041 -1.876 6.181  HN62   PAP 46 
PAP H2     H2   H 0 1 N N N 6.984  8.729  -3.957 -0.724 2.107  7.178  H2     PAP 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PAP PB    O1B    DOUB N N 1  
PAP PB    O2B    SING N N 2  
PAP PB    O3B    SING N N 3  
PAP PB    O3A    SING N N 4  
PAP O2B   HOB2   SING N N 5  
PAP O3B   HOB3   SING N N 6  
PAP PA    O1A    DOUB N N 7  
PAP PA    O2A    SING N N 8  
PAP PA    O3A    SING N N 9  
PAP PA    "O5'"  SING N N 10 
PAP O2A   HOA2   SING N N 11 
PAP "O5'" "C5'"  SING N N 12 
PAP "C5'" "C4'"  SING N N 13 
PAP "C5'" "H5'1" SING N N 14 
PAP "C5'" "H5'2" SING N N 15 
PAP "C4'" "O4'"  SING N N 16 
PAP "C4'" "C3'"  SING N N 17 
PAP "C4'" "H4'"  SING N N 18 
PAP "O4'" "C1'"  SING N N 19 
PAP "C3'" "O3'"  SING N N 20 
PAP "C3'" "C2'"  SING N N 21 
PAP "C3'" "H3'"  SING N N 22 
PAP "O3'" P      SING N N 23 
PAP P     O1     DOUB N N 24 
PAP P     O2     SING N N 25 
PAP P     O3     SING N N 26 
PAP O2    HO2    SING N N 27 
PAP O3    HO3    SING N N 28 
PAP "C2'" "O2'"  SING N N 29 
PAP "C2'" "C1'"  SING N N 30 
PAP "C2'" "H2'"  SING N N 31 
PAP "O2'" "HO2'" SING N N 32 
PAP "C1'" N9     SING N N 33 
PAP "C1'" "H1'"  SING N N 34 
PAP N9    C8     SING Y N 35 
PAP N9    C4     SING Y N 36 
PAP C8    N7     DOUB Y N 37 
PAP C8    H8     SING N N 38 
PAP N7    C5     SING Y N 39 
PAP C5    C6     SING Y N 40 
PAP C5    C4     DOUB Y N 41 
PAP C6    N6     SING N N 42 
PAP C6    N1     DOUB Y N 43 
PAP N6    HN61   SING N N 44 
PAP N6    HN62   SING N N 45 
PAP N1    C2     SING Y N 46 
PAP C2    N3     DOUB Y N 47 
PAP C2    H2     SING N N 48 
PAP N3    C4     SING Y N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PAP SMILES           ACDLabs              10.04 "O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O"                                                                                                                                                  
PAP SMILES_CANONICAL CACTVS               3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@H]3O"                                                                                                                         
PAP SMILES           CACTVS               3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]3O"                                                                                                                                
PAP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)OP(=O)(O)O)OP(=O)(O)O)O)N"                                                                                                                      
PAP SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)OP(=O)(O)O)O)N"                                                                                                                                            
PAP InChI            InChI                1.03  "InChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-6(16)7(27-29(17,18)19)4(26-10)1-25-31(23,24)28-30(20,21)22/h2-4,6-7,10,16H,1H2,(H,23,24)(H2,11,12,13)(H2,17,18,19)(H2,20,21,22)/t4-,6-,7-,10-/m1/s1" 
PAP InChIKey         InChI                1.03  GBBWIZKLHXYJOA-KQYNXXCUSA-N                                                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PAP "SYSTEMATIC NAME" ACDLabs              10.04 
;adenosine 3'-(dihydrogen phosphate) 5'-(trihydrogen diphosphate)
;
PAP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxy-oxolan-2-yl]methyl phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PAP "Create component"  1999-07-08 RCSB 
PAP "Modify descriptor" 2011-06-04 RCSB 
# 
