data_PXP
# 
_chem_comp.id                                    PXP 
_chem_comp.name                                  "PYRIDOXINE-5'-PHOSPHATE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H12 N O6 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2000-12-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        249.158 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PXP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1HO4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PXP N1   N1   N 0 1 Y N N N N N 33.933 12.267 30.160 2.011  -0.219 2.096  N1   PXP 1  
PXP C2   C2   C 0 1 Y N N N N N 34.582 13.475 30.425 1.220  -0.069 3.140  C2   PXP 2  
PXP C2A  C2A  C 0 1 N N N N N N 35.249 13.704 31.777 1.796  -0.155 4.530  C2A  PXP 3  
PXP C3   C3   C 0 1 Y N N N N N 34.627 14.454 29.439 -0.136 0.160  2.973  C3   PXP 4  
PXP O3   O3   O 0 1 N N N N N N 35.256 15.662 29.661 -0.948 0.313  4.053  O3   PXP 5  
PXP C4   C4   C 0 1 Y N N N N N 34.018 14.219 28.198 -0.654 0.242  1.684  C4   PXP 6  
PXP C4A  C4A  C 0 1 N N N N N N 34.080 15.275 27.162 -2.122 0.497  1.457  C4A  PXP 7  
PXP O4A  O4A  O 0 1 N N N N N N 33.327 16.304 27.655 -2.818 -0.749 1.399  O4A  PXP 8  
PXP C5   C5   C 0 1 Y N N N N N 33.363 13.005 27.937 0.211  0.079  0.615  C5   PXP 9  
PXP C6   C6   C 0 1 Y N N N N N 33.325 12.026 28.939 1.551  -0.153 0.862  C6   PXP 10 
PXP C5A  C5A  C 0 1 N N N N N N 32.664 12.686 26.597 -0.301 0.153  -0.799 C5A  PXP 11 
PXP O4P  O4P  O 0 1 N N N N N N 31.388 12.293 26.996 0.781  -0.047 -1.709 O4P  PXP 12 
PXP P    P    P 0 1 N N N N N N 30.222 11.774 26.155 0.164  0.044  -3.194 P    PXP 13 
PXP O1P  O1P  O 0 1 N N N N N N 30.582 10.360 26.221 -0.449 1.376  -3.392 O1P  PXP 14 
PXP O2P  O2P  O 0 1 N N N N N N 30.490 12.503 24.787 1.336  -0.173 -4.276 O2P  PXP 15 
PXP O3P  O3P  O 0 1 N N N N N N 28.885 12.070 26.602 -0.956 -1.095 -3.380 O3P  PXP 16 
PXP H2A1 1H2A H 0 0 N N N N N N 35.767 14.668 31.988 2.113  0.836  4.854  H2A1 PXP 17 
PXP H2A2 2H2A H 0 0 N N N N N N 34.492 13.527 32.577 1.039  -0.537 5.215  H2A2 PXP 18 
PXP H2A3 3H2A H 0 0 N N N N N N 35.966 12.870 31.960 2.655  -0.827 4.527  H2A3 PXP 19 
PXP HO3  HO3  H 0 1 N N N N N N 35.286 16.331 28.987 -1.277 -0.566 4.282  HO3  PXP 20 
PXP H4A1 1H4A H 0 0 N N N N N N 35.117 15.570 26.881 -2.518 1.096  2.276  H4A1 PXP 21 
PXP H4A2 2H4A H 0 0 N N N N N N 33.765 14.931 26.149 -2.256 1.032  0.516  H4A2 PXP 22 
PXP HOA4 4HOA H 0 0 N N N N N N 33.366 16.981 26.990 -3.751 -0.542 1.253  HOA4 PXP 23 
PXP H6   H6   H 0 1 N N N N N N 32.815 11.063 28.766 2.231  -0.281 0.033  H6   PXP 24 
PXP H5A1 1H5A H 0 0 N N N N N N 32.684 13.515 25.852 -1.053 -0.620 -0.954 H5A1 PXP 25 
PXP H5A2 2H5A H 0 0 N N N N N N 33.199 11.947 25.956 -0.746 1.132  -0.973 H5A2 PXP 26 
PXP HOP2 2HOP H 0 0 N N N N N N 29.765 12.180 24.264 0.925  -0.110 -5.149 HOP2 PXP 27 
PXP HOP3 3HOP H 0 0 N N N N N N 28.160 11.747 26.079 -0.516 -1.945 -3.243 HOP3 PXP 28 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PXP N1  C2   DOUB Y N 1  
PXP N1  C6   SING Y N 2  
PXP C2  C2A  SING N N 3  
PXP C2  C3   SING Y N 4  
PXP C2A H2A1 SING N N 5  
PXP C2A H2A2 SING N N 6  
PXP C2A H2A3 SING N N 7  
PXP C3  O3   SING N N 8  
PXP C3  C4   DOUB Y N 9  
PXP O3  HO3  SING N N 10 
PXP C4  C4A  SING N N 11 
PXP C4  C5   SING Y N 12 
PXP C4A O4A  SING N N 13 
PXP C4A H4A1 SING N N 14 
PXP C4A H4A2 SING N N 15 
PXP O4A HOA4 SING N N 16 
PXP C5  C6   DOUB Y N 17 
PXP C5  C5A  SING N N 18 
PXP C6  H6   SING N N 19 
PXP C5A O4P  SING N N 20 
PXP C5A H5A1 SING N N 21 
PXP C5A H5A2 SING N N 22 
PXP O4P P    SING N N 23 
PXP P   O1P  DOUB N N 24 
PXP P   O2P  SING N N 25 
PXP P   O3P  SING N N 26 
PXP O2P HOP2 SING N N 27 
PXP O3P HOP3 SING N N 28 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PXP SMILES           ACDLabs              10.04 "O=P(O)(O)OCc1cnc(c(O)c1CO)C"                                                                    
PXP SMILES_CANONICAL CACTVS               3.341 "Cc1ncc(CO[P](O)(O)=O)c(CO)c1O"                                                                  
PXP SMILES           CACTVS               3.341 "Cc1ncc(CO[P](O)(O)=O)c(CO)c1O"                                                                  
PXP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CO)O"                                                                  
PXP SMILES           "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CO)O"                                                                  
PXP InChI            InChI                1.03  "InChI=1S/C8H12NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2,10-11H,3-4H2,1H3,(H2,12,13,14)" 
PXP InChIKey         InChI                1.03  WHOMFKWHIQZTHY-UHFFFAOYSA-N                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PXP "SYSTEMATIC NAME" ACDLabs              10.04 "[5-hydroxy-4-(hydroxymethyl)-6-methylpyridin-3-yl]methyl dihydrogen phosphate"  
PXP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[5-hydroxy-4-(hydroxymethyl)-6-methyl-pyridin-3-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PXP "Create component"  2000-12-12 RCSB 
PXP "Modify descriptor" 2011-06-04 RCSB 
PXP "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            PXP 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C4A 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
