data_PYP
# 
_chem_comp.id                                    PYP 
_chem_comp.name                                  "2'-DEOXYRIBOFURANOSYLPYRENE-5'-MONOPHOSPHATE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H19 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2000-10-04 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        398.346 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PYP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1FZS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PYP P      P      P 0 1 N N N 5.631  6.116  -8.149 -5.787 0.921  -0.337 P      PYP 1  
PYP O1P    O1P    O 0 1 N N N 4.711  5.705  -9.234 -6.874 0.068  0.194  O1P    PYP 2  
PYP O2P    O2P    O 0 1 N N N 7.079  6.249  -8.429 -5.473 2.103  0.710  O2P    PYP 3  
PYP "O5'"  "O5'"  O 0 1 N N N 5.111  7.517  -7.524 -4.463 0.030  -0.553 "O5'"  PYP 4  
PYP "C5'"  "C5'"  C 0 1 N N N 4.165  8.407  -8.135 -3.872 -0.751 0.488  "C5'"  PYP 5  
PYP "C4'"  "C4'"  C 0 1 N N R 2.794  7.756  -8.350 -2.635 -1.469 -0.054 "C4'"  PYP 6  
PYP "O4'"  "O4'"  O 0 1 N N N 2.272  7.311  -7.076 -1.618 -0.509 -0.386 "O4'"  PYP 7  
PYP "C1'"  "C1'"  C 0 1 N N R 1.051  8.023  -6.811 -0.345 -1.127 -0.100 "C1'"  PYP 8  
PYP C1     C1     C 0 1 Y N N 1.808  8.660  -4.450 0.352  1.289  0.489  C1     PYP 9  
PYP C2     C2     C 0 1 Y N N 1.563  8.816  -3.073 1.277  2.211  0.658  C2     PYP 10 
PYP C3     C3     C 0 1 Y N N 0.041  8.689  -1.147 3.752  2.879  0.626  C3     PYP 11 
PYP C4     C4     C 0 1 Y N N -1.230 8.410  -0.612 5.015  2.555  0.430  C4     PYP 12 
PYP C5     C5     C 0 1 Y N N -3.578 7.674  -0.937 6.777  0.799  -0.193 C5     PYP 13 
PYP C6     C6     C 0 1 Y N N -4.629 7.236  -1.775 7.067  -0.436 -0.549 C6     PYP 14 
PYP C7     C7     C 0 1 Y N N -4.383 7.085  -3.155 5.998  -1.436 -0.726 C7     PYP 15 
PYP C8     C8     C 0 1 Y N N -2.872 7.207  -5.095 3.651  -2.066 -0.694 C8     PYP 16 
PYP C9     C9     C 0 1 Y N N -1.603 7.485  -5.640 2.395  -1.743 -0.501 C9     PYP 17 
PYP C10    C10    C 0 1 Y N N 0.734  8.206  -5.318 0.723  -0.081 0.089  C10    PYP 18 
PYP C11    C11    C 0 1 Y N N -0.520 7.935  -4.774 1.987  -0.387 -0.102 C11    PYP 19 
PYP C12    C12    C 0 1 Y N N 0.247  8.518  -2.566 2.694  1.871  0.445  C12    PYP 20 
PYP C13    C13    C 0 1 Y N N -2.274 7.961  -1.508 5.373  1.183  0.031  C13    PYP 21 
PYP C14    C14    C 0 1 Y N N -3.066 7.380  -3.680 4.744  -1.095 -0.528 C14    PYP 22 
PYP C15    C15    C 0 1 Y N N -0.771 8.086  -3.409 3.016  0.650  0.089  C15    PYP 23 
PYP C16    C16    C 0 1 Y N N -2.029 7.812  -2.867 4.427  0.288  -0.129 C16    PYP 24 
PYP "C2'"  "C2'"  C 0 1 N N N 1.196  9.332  -7.585 -0.602 -1.890 1.224  "C2'"  PYP 25 
PYP "C3'"  "C3'"  C 0 1 N N S 1.752  8.734  -8.909 -2.052 -2.398 1.030  "C3'"  PYP 26 
PYP "O3'"  "O3'"  O 0 1 N N N 0.713  8.019  -9.591 -2.051 -3.754 0.579  "O3'"  PYP 27 
PYP O3P    O3P    O 0 1 N N N ?      ?      ?      -6.241 1.556  -1.745 O3P    PYP 28 
PYP HOP2   HOP2   H 0 0 N N N 7.219  6.277  -9.368 -4.769 2.703  0.426  HOP2   PYP 29 
PYP "H5'1" "H5'1" H 0 0 N N N 4.036  9.280  -7.479 -3.582 -0.099 1.311  "H5'1" PYP 30 
PYP "H5'2" "H5'2" H 0 0 N N N 4.560  8.688  -9.122 -4.593 -1.487 0.844  "H5'2" PYP 31 
PYP "H4'"  "H4'"  H 0 1 N N N 2.952  6.935  -9.065 -2.900 -2.049 -0.938 "H4'"  PYP 32 
PYP "H1'"  "H1'"  H 0 1 N N N 0.173  7.451  -7.145 -0.067 -1.818 -0.896 "H1'"  PYP 33 
PYP H1     H1     H 0 1 N N N 2.785  8.876  -4.858 -0.687 1.537  0.649  H1     PYP 34 
PYP H2     H2     H 0 1 N N N 2.346  9.152  -2.409 0.997  3.213  0.950  H2     PYP 35 
PYP H3     H3     H 0 1 N N N 0.846  9.024  -0.510 3.493  3.886  0.918  H3     PYP 36 
PYP H4     H4     H 0 1 N N N -1.422 8.528  0.444  5.789  3.297  0.563  H4     PYP 37 
PYP H5     H5     H 0 1 N N N -3.744 7.795  0.123  7.565  1.526  -0.065 H5     PYP 38 
PYP H6     H6     H 0 1 N N N -5.605 7.021  -1.365 8.096  -0.717 -0.713 H6     PYP 39 
PYP H7     H7     H 0 1 N N N -5.170 6.752  -3.815 6.246  -2.445 -1.018 H7     PYP 40 
PYP H8     H8     H 0 1 N N N -3.682 6.871  -5.726 3.892  -3.077 -0.986 H8     PYP 41 
PYP H9     H9     H 0 1 N N N -1.432 7.365  -6.700 1.634  -2.497 -0.638 H9     PYP 42 
PYP "H2'2" "H2'2" H 0 0 N N N 0.248  9.875  -7.712 0.090  -2.725 1.333  "H2'2" PYP 43 
PYP "H2'1" "H2'1" H 0 0 N N N 1.816  10.106 -7.109 -0.537 -1.218 2.079  "H2'1" PYP 44 
PYP "H3'"  "H3'"  H 0 1 N N N 2.145  9.466  -9.630 -2.617 -2.303 1.957  "H3'"  PYP 45 
PYP H3T    H3T    H 0 1 N N N -0.008 7.861  -8.993 -1.694 -4.382 1.222  H3T    PYP 46 
PYP HOP3   HOP3   H 0 0 N N N ?      ?      ?      -7.035 2.107  -1.690 HOP3   PYP 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PYP P     O1P    DOUB N N 1  
PYP P     O2P    SING N N 2  
PYP P     "O5'"  SING N N 3  
PYP P     O3P    SING N N 4  
PYP O2P   HOP2   SING N N 5  
PYP "O5'" "C5'"  SING N N 6  
PYP "C5'" "C4'"  SING N N 7  
PYP "C5'" "H5'1" SING N N 8  
PYP "C5'" "H5'2" SING N N 9  
PYP "C4'" "O4'"  SING N N 10 
PYP "C4'" "C3'"  SING N N 11 
PYP "C4'" "H4'"  SING N N 12 
PYP "O4'" "C1'"  SING N N 13 
PYP "C1'" C10    SING N N 14 
PYP "C1'" "C2'"  SING N N 15 
PYP "C1'" "H1'"  SING N N 16 
PYP C1    C2     DOUB Y N 17 
PYP C1    C10    SING Y N 18 
PYP C1    H1     SING N N 19 
PYP C2    C12    SING Y N 20 
PYP C2    H2     SING N N 21 
PYP C3    C4     DOUB Y N 22 
PYP C3    C12    SING Y N 23 
PYP C3    H3     SING N N 24 
PYP C4    C13    SING Y N 25 
PYP C4    H4     SING N N 26 
PYP C5    C6     DOUB Y N 27 
PYP C5    C13    SING Y N 28 
PYP C5    H5     SING N N 29 
PYP C6    C7     SING Y N 30 
PYP C6    H6     SING N N 31 
PYP C7    C14    DOUB Y N 32 
PYP C7    H7     SING N N 33 
PYP C8    C9     DOUB Y N 34 
PYP C8    C14    SING Y N 35 
PYP C8    H8     SING N N 36 
PYP C9    C11    SING Y N 37 
PYP C9    H9     SING N N 38 
PYP C10   C11    DOUB Y N 39 
PYP C11   C15    SING Y N 40 
PYP C12   C15    DOUB Y N 41 
PYP C13   C16    DOUB Y N 42 
PYP C14   C16    SING Y N 43 
PYP C15   C16    SING Y N 44 
PYP "C2'" "C3'"  SING N N 45 
PYP "C2'" "H2'2" SING N N 46 
PYP "C2'" "H2'1" SING N N 47 
PYP "C3'" "O3'"  SING N N 48 
PYP "C3'" "H3'"  SING N N 49 
PYP "O3'" H3T    SING N N 50 
PYP O3P   HOP3   SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PYP SMILES           ACDLabs              10.04 "O=P(OCC5OC(c4c1c3c2c(cc1)cccc2ccc3cc4)CC5O)(O)O"                                                                                                                       
PYP SMILES_CANONICAL CACTVS               3.341 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)c2ccc3ccc4cccc5ccc2c3c45"                                                                                                         
PYP SMILES           CACTVS               3.341 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)c2ccc3ccc4cccc5ccc2c3c45"                                                                                                              
PYP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc2ccc3ccc(c4c3c2c(c1)cc4)[C@H]5C[C@@H]([C@H](O5)COP(=O)(O)O)O"                                                                                                      
PYP SMILES           "OpenEye OEToolkits" 1.5.0 "c1cc2ccc3ccc(c4c3c2c(c1)cc4)C5CC(C(O5)COP(=O)(O)O)O"                                                                                                                   
PYP InChI            InChI                1.03  "InChI=1S/C21H19O6P/c22-17-10-18(27-19(17)11-26-28(23,24)25)15-8-6-14-5-4-12-2-1-3-13-7-9-16(15)21(14)20(12)13/h1-9,17-19,22H,10-11H2,(H2,23,24,25)/t17-,18+,19+/m0/s1" 
PYP InChIKey         InChI                1.03  JJJZGYICTVDZQU-IPMKNSEASA-N                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PYP "SYSTEMATIC NAME" ACDLabs              10.04 "(1R)-1,4-anhydro-2-deoxy-5-O-phosphono-1-pyren-1-yl-D-erythro-pentitol"     
PYP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-pyren-1-yl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PYP "Create component"  2000-10-04 EBI  
PYP "Modify descriptor" 2011-06-04 RCSB 
# 
