data_RMP
# 
_chem_comp.id                                    RMP 
_chem_comp.name                                  "2'-DEOXY-ADENOSINE-5'-RP-MONOMETHYLPHOSPHONATE" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C11 H16 N5 O5 P" 
_chem_comp.mon_nstd_parent_comp_id               DA 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2001-10-09 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        329.249 
_chem_comp.one_letter_code                       A 
_chem_comp.three_letter_code                     RMP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        "OpenEye OEToolkits" 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RMP P      P    P 0 1 N N S -10.665 1.432  -2.865 3.084  5.145  -3.460 P      RMP 1  
RMP CMP    CMP  C 0 1 N N N -12.164 2.349  -3.080 2.991  4.815  -5.208 CMP    RMP 2  
RMP OP1    O1P  O 0 1 N N N -10.746 0.382  -3.900 1.950  5.981  -2.942 OP1    RMP 3  
RMP "O5'"  O5*  O 0 1 N N N -9.308  2.220  -3.081 3.235  3.702  -2.745 "O5'"  RMP 4  
RMP "C5'"  C5*  C 0 1 N N N -8.954  3.292  -2.271 2.240  2.706  -2.896 "C5'"  RMP 5  
RMP "C4'"  C4*  C 0 1 N N R -7.624  3.888  -2.642 2.219  1.846  -1.646 "C4'"  RMP 6  
RMP "O4'"  O4*  O 0 1 N N N -6.624  2.922  -2.395 1.879  2.654  -0.508 "O4'"  RMP 7  
RMP "C1'"  C1*  C 0 1 N N R -5.678  2.910  -3.436 1.171  1.827  0.433  "C1'"  RMP 8  
RMP N9     N9   N 0 1 Y N N -5.012  1.595  -3.539 -0.077 2.488  0.819  N9     RMP 9  
RMP C8     C8   C 0 1 Y N N -5.566  0.349  -3.622 -0.847 3.294  0.021  C8     RMP 10 
RMP N7     N7   N 0 1 Y N N -4.713  -0.638 -3.667 -1.913 3.746  0.647  N7     RMP 11 
RMP C5     C5   C 0 1 Y N N -3.493  0.014  -3.644 -1.833 3.210  1.908  C5     RMP 12 
RMP C6     C6   C 0 1 Y N N -2.153  -0.432 -3.618 -2.655 3.315  3.026  C6     RMP 13 
RMP N6     N6   N 0 1 N N N -1.787  -1.703 -3.677 -3.826 4.091  2.985  N6     RMP 14 
RMP N1     N1   N 0 1 Y N N -1.162  0.460  -3.552 -2.313 2.657  4.159  N1     RMP 15 
RMP C2     C2   C 0 1 Y N N -1.472  1.742  -3.510 -1.173 1.925  4.138  C2     RMP 16 
RMP N3     N3   N 0 1 Y N N -2.678  2.302  -3.508 -0.299 1.747  3.123  N3     RMP 17 
RMP C4     C4   C 0 1 Y N N -3.662  1.372  -3.584 -0.699 2.425  2.036  C4     RMP 18 
RMP "C3'"  C3*  C 0 1 N N S -7.470  4.320  -4.105 1.177  0.741  -1.684 "C3'"  RMP 19 
RMP "C2'"  C2*  C 0 1 N N N -6.480  3.287  -4.659 0.970  0.461  -0.212 "C2'"  RMP 20 
RMP "O3'"  O3*  O 0 1 N N N -6.948  5.633  -4.096 1.636  -0.408 -2.366 "O3'"  RMP 21 
RMP OP3    O3P  O 0 1 N Y N ?       ?      ?      4.547  5.805  -3.261 OP3    RMP 22 
RMP HMP1   1HMP H 0 0 N N N -12.622 2.539  -2.098 3.311  5.694  -5.773 HMP1   RMP 23 
RMP HMP2   2HMP H 0 0 N N N -11.940 3.307  -3.572 3.639  3.974  -5.466 HMP2   RMP 24 
RMP HMP3   3HMP H 0 0 N N N -12.861 1.770  -3.704 1.964  4.569  -5.489 HMP3   RMP 25 
RMP "H5'"  1H5* H 0 1 N N N -8.894  2.965  -1.252 1.270  3.186  -3.037 "H5'"  RMP 26 
RMP "H5''" 2H5* H 0 0 N N N -9.697  4.066  -2.356 2.475  2.094  -3.768 "H5''" RMP 27 
RMP "H4'"  H4*  H 0 1 N N N -7.475  4.741  -1.989 3.224  1.436  -1.487 "H4'"  RMP 28 
RMP "H1'"  H1*  H 0 1 N N N -4.920  3.682  -3.261 1.753  1.756  1.357  "H1'"  RMP 29 
RMP H8     H8   H 0 1 N N N -6.633  0.220  -3.611 -0.579 3.514  -1.004 H8     RMP 30 
RMP H61    1H6  H 0 1 N N N -0.825  -1.950 -3.597 -4.674 3.685  2.637  H61    RMP 31 
RMP H62    2H6  H 0 1 N N N -2.500  -2.392 -3.713 -3.779 5.065  3.215  H62    RMP 32 
RMP H2     H2   H 0 1 N N N -0.637  2.413  -3.471 -0.929 1.412  5.062  H2     RMP 33 
RMP "H3'"  H3*  H 0 1 N N N -8.411  4.280  -4.616 0.241  1.086  -2.140 "H3'"  RMP 34 
RMP "H2'"  1H2* H 0 1 N N N -7.020  2.429  -4.992 -0.002 0.004  0.001  "H2'"  RMP 35 
RMP "H2''" 2H2* H 0 0 N N N -5.860  3.666  -5.438 1.736  -0.240 0.147  "H2''" RMP 36 
RMP "HO3'" H3T  H 0 0 N Y N -6.831  5.922  -3.198 1.809  -0.135 -3.280 "HO3'" RMP 37 
RMP HOP3   3HOP H 0 0 N N N ?       ?      ?      4.626  6.639  -2.750 HOP3   RMP 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RMP P     CMP    SING N N 1  
RMP P     OP1    DOUB N N 2  
RMP P     "O5'"  SING N N 3  
RMP P     OP3    SING N N 4  
RMP CMP   HMP1   SING N N 5  
RMP CMP   HMP2   SING N N 6  
RMP CMP   HMP3   SING N N 7  
RMP "O5'" "C5'"  SING N N 8  
RMP "C5'" "C4'"  SING N N 9  
RMP "C5'" "H5'"  SING N N 10 
RMP "C5'" "H5''" SING N N 11 
RMP "C4'" "O4'"  SING N N 12 
RMP "C4'" "C3'"  SING N N 13 
RMP "C4'" "H4'"  SING N N 14 
RMP "O4'" "C1'"  SING N N 15 
RMP "C1'" N9     SING N N 16 
RMP "C1'" "C2'"  SING N N 17 
RMP "C1'" "H1'"  SING N N 18 
RMP N9    C8     SING Y N 19 
RMP N9    C4     SING Y N 20 
RMP C8    N7     DOUB Y N 21 
RMP C8    H8     SING N N 22 
RMP N7    C5     SING Y N 23 
RMP C5    C6     DOUB Y N 24 
RMP C5    C4     SING Y N 25 
RMP C6    N6     SING N N 26 
RMP C6    N1     SING Y N 27 
RMP N6    H61    SING N N 28 
RMP N6    H62    SING N N 29 
RMP N1    C2     DOUB Y N 30 
RMP C2    N3     SING Y N 31 
RMP C2    H2     SING N N 32 
RMP N3    C4     DOUB Y N 33 
RMP "C3'" "C2'"  SING N N 34 
RMP "C3'" "O3'"  SING N N 35 
RMP "C3'" "H3'"  SING N N 36 
RMP "C2'" "H2'"  SING N N 37 
RMP "C2'" "H2''" SING N N 38 
RMP "O3'" "HO3'" SING N N 39 
RMP OP3   HOP3   SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RMP SMILES           ACDLabs              10.04 "O=P(O)(OCC3OC(n2cnc1c(ncnc12)N)CC3O)C"                                                                                                           
RMP SMILES_CANONICAL CACTVS               3.341 "C[P@@](O)(=O)OC[C@H]1O[C@H](C[C@@H]1O)n2cnc3c(N)ncnc23"                                                                                          
RMP SMILES           CACTVS               3.341 "C[P](O)(=O)OC[CH]1O[CH](C[CH]1O)n2cnc3c(N)ncnc23"                                                                                                
RMP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[P@](=O)(O)OC[C@@H]1[C@H](C[C@@H](O1)n2cnc3c2ncnc3N)O"                                                                                          
RMP SMILES           "OpenEye OEToolkits" 1.5.0 "CP(=O)(O)OCC1C(CC(O1)n2cnc3c2ncnc3N)O"                                                                                                           
RMP InChI            InChI                1.03  "InChI=1S/C11H16N5O5P/c1-22(18,19)20-3-7-6(17)2-8(21-7)16-5-15-9-10(12)13-4-14-11(9)16/h4-8,17H,2-3H2,1H3,(H,18,19)(H2,12,13,14)/t6-,7+,8+/m0/s1" 
RMP InChIKey         InChI                1.03  YNCYIAAXFUCITC-XLPZGREQSA-N                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
RMP "SYSTEMATIC NAME" ACDLabs              10.04 "2'-deoxy-5'-O-[(S)-hydroxy(methyl)phosphoryl]adenosine"                                 
RMP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-methyl-phosphinic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RMP "Create component"  2001-10-09 RCSB 
RMP "Modify descriptor" 2011-06-04 RCSB 
# 
