data_RSP
#

_chem_comp.id                                   RSP
_chem_comp.name                                 "4-amino-1-(5-O-phosphono-beta-D-ribofuranosyl)pyrimidine-2(1H)-thione"
_chem_comp.type                                 "RNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C9 H14 N3 O7 P S"
_chem_comp.mon_nstd_parent_comp_id              C
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-01-11
_chem_comp.pdbx_modified_date                   2019-12-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       339.262
_chem_comp.one_letter_code                      C
_chem_comp.three_letter_code                    RSP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2KRV
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RSP  P       P       P  0  1  N  N  N   5.049   -9.227  -0.867  -4.098  -0.946   0.156  P       RSP   1  
RSP  N1      N1      N  0  1  N  N  N   1.303   -6.593   1.269   2.394   0.106   0.534  N1      RSP   2  
RSP  C2      C2      C  0  1  N  N  N   0.039   -5.998   1.348   2.293  -0.823  -0.434  C2      RSP   3  
RSP  S2      S2      S  0  1  N  N  N  -0.346   -5.088   2.702   0.920  -0.829  -1.456  S2      RSP   4  
RSP  N3      N3      N  0  1  N  N  N  -0.838   -6.172   0.332   3.245  -1.737  -0.611  N3      RSP   5  
RSP  C4      C4      C  0  1  N  N  N  -0.494   -6.908  -0.728   4.320  -1.755   0.166  C4      RSP   6  
RSP  N4      N4      N  0  1  N  N  N  -1.386   -7.042  -1.711   5.297  -2.704  -0.026  N4      RSP   7  
RSP  C5      C5      C  0  1  N  N  N   0.781   -7.537  -0.827   4.456  -0.795   1.191  C5      RSP   8  
RSP  C6      C6      C  0  1  N  N  N   1.639   -7.355   0.184   3.482   0.132   1.354  C6      RSP   9  
RSP  "C1'"   "C1'"   C  0  1  N  N  R   2.262   -6.374   2.365   1.330   1.100   0.704  "C1'"   RSP  10  
RSP  "C2'"   "C2'"   C  0  1  N  N  R   2.089   -7.323   3.552   1.208   1.990  -0.559  "C2'"   RSP  11  
RSP  "O2'"   "O2'"   O  0  1  N  N  N   2.384   -6.603   4.734   2.114   3.093  -0.495  "O2'"   RSP  12  
RSP  "C3'"   "C3'"   C  0  1  N  N  S   3.146   -8.387   3.262  -0.260   2.474  -0.474  "C3'"   RSP  13  
RSP  "O3'"   "O3'"   O  0  1  N  N  N   3.627   -9.019   4.446  -0.323   3.779   0.105  "O3'"   RSP  14  
RSP  "C4'"   "C4'"   C  0  1  N  N  R   4.255   -7.594   2.585  -0.945   1.442   0.443  "C4'"   RSP  15  
RSP  "O4'"   "O4'"   O  0  1  N  N  N   3.569   -6.547   1.850   0.041   0.455   0.791  "O4'"   RSP  16  
RSP  "C5'"   "C5'"   C  0  1  N  N  N   5.116   -8.381   1.624  -2.111   0.783  -0.296  "C5'"   RSP  17  
RSP  "O5'"   "O5'"   O  0  1  N  N  N   4.345   -8.789   0.494  -2.811  -0.085   0.598  "O5'"   RSP  18  
RSP  OP1     OP1     O  0  1  N  N  N   3.985   -9.618  -1.827  -5.123  -0.043  -0.414  OP1     RSP  19  
RSP  OP2     OP2     O  0  1  N  N  N   6.133  -10.190  -0.543  -3.664  -2.031  -0.951  OP2     RSP  20  
RSP  OP3     O3P     O  0  1  N  Y  N   5.726   -7.874  -1.414  -4.705  -1.702   1.441  OP3     RSP  21  
RSP  H5      H5      H  0  1  N  N  N   1.045   -8.138  -1.685   5.325  -0.796   1.832  H5      RSP  22  
RSP  H6      H6      H  0  1  N  N  N   2.614   -7.818   0.142   3.563   0.877   2.132  H6      RSP  23  
RSP  "H5'"   "H5'"   H  0  1  N  N  N   5.509   -9.272   2.136  -2.791   1.552  -0.663  "H5'"   RSP  24  
RSP  "H1'"   "H1'"   H  0  1  N  N  N   2.081   -5.357   2.744   1.515   1.711   1.587  "H1'"   RSP  25  
RSP  "H2'"   "H2'"   H  0  1  N  N  N   1.084   -7.752   3.681   1.373   1.405  -1.464  "H2'"   RSP  26  
RSP  "HO2'"  "HO2'"  H  0  0  N  N  N   2.283   -7.174   5.487   2.075   3.679  -1.263  "HO2'"  RSP  27  
RSP  "H3'"   "H3'"   H  0  1  N  N  N   2.748   -9.210   2.650  -0.720   2.473  -1.463  "H3'"   RSP  28  
RSP  "H4'"   "H4'"   H  0  1  N  N  N   4.954   -7.239   3.357  -1.309   1.933   1.346  "H4'"   RSP  29  
RSP  HN4     HN4     H  0  1  N  N  N  -2.279   -6.598  -1.639   6.082  -2.715   0.544  HN4     RSP  30  
RSP  HN4A    HN4A    H  0  0  N  N  N  -1.161   -7.586  -2.519   5.201  -3.363  -0.732  HN4A    RSP  31  
RSP  "H5'A"  "H5'A"  H  0  0  N  N  N   5.951   -7.750   1.285  -1.728   0.205  -1.137  "H5'A"  RSP  32  
RSP  "HO3'"  H3T     H  0  0  N  Y  N   4.279   -9.670   4.215   0.143   4.457  -0.402  "HO3'"  RSP  33  
RSP  HOP2    HOP2    H  0  0  N  N  N   5.997  -10.995  -1.028  -2.993  -2.658  -0.646  HOP2    RSP  34  
RSP  HOP3    HOP3    H  0  0  N  N  N   5.306   -7.615  -2.226  -5.484  -2.241   1.248  HOP3    RSP  35  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RSP  OP1     P       DOUB  N  N   1  
RSP  OP3     P       SING  N  N   2  
RSP  P       OP2     SING  N  N   3  
RSP  P       "O5'"   SING  N  N   4  
RSP  C6      N1      SING  N  N   5  
RSP  N1      C2      SING  N  N   6  
RSP  N1      "C1'"   SING  N  N   7  
RSP  N3      C2      SING  N  N   8  
RSP  C2      S2      DOUB  N  N   9  
RSP  C4      N3      DOUB  N  N  10  
RSP  N4      C4      SING  N  N  11  
RSP  C5      C4      SING  N  N  12  
RSP  HN4     N4      SING  N  N  13  
RSP  N4      HN4A    SING  N  N  14  
RSP  H5      C5      SING  N  N  15  
RSP  C5      C6      DOUB  N  N  16  
RSP  H6      C6      SING  N  N  17  
RSP  "O4'"   "C1'"   SING  N  N  18  
RSP  "C1'"   "H1'"   SING  N  N  19  
RSP  "C1'"   "C2'"   SING  N  N  20  
RSP  "C3'"   "C2'"   SING  N  N  21  
RSP  "C2'"   "H2'"   SING  N  N  22  
RSP  "C2'"   "O2'"   SING  N  N  23  
RSP  "O2'"   "HO2'"  SING  N  N  24  
RSP  "C4'"   "C3'"   SING  N  N  25  
RSP  "H3'"   "C3'"   SING  N  N  26  
RSP  "C3'"   "O3'"   SING  N  N  27  
RSP  "O3'"   "HO3'"  SING  N  N  28  
RSP  "C5'"   "C4'"   SING  N  N  29  
RSP  "O4'"   "C4'"   SING  N  N  30  
RSP  "C4'"   "H4'"   SING  N  N  31  
RSP  "O5'"   "C5'"   SING  N  N  32  
RSP  "H5'A"  "C5'"   SING  N  N  33  
RSP  "C5'"   "H5'"   SING  N  N  34  
RSP  OP2     HOP2    SING  N  N  35  
RSP  OP3     HOP3    SING  N  N  36  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RSP  SMILES_CANONICAL  CACTVS                3.352  "NC1=NC(=S)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O"  
RSP  SMILES            CACTVS                3.352  "NC1=NC(=S)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O"  
RSP  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "C1=CN(C(=S)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O"  
RSP  SMILES            "OpenEye OEToolkits"  1.7.0  "C1=CN(C(=S)N=C1N)C2C(C(C(O2)COP(=O)(O)O)O)O"  
RSP  InChI             InChI                 1.03   "InChI=1S/C9H14N3O7PS/c10-5-1-2-12(9(21)11-5)8-7(14)6(13)4(19-8)3-18-20(15,16)17/h1-2,4,6-8,13-14H,3H2,(H2,10,11,21)(H2,15,16,17)/t4-,6-,7-,8-/m1/s1"  
RSP  InChIKey          InChI                 1.03   BPWVHBCPZTVLLY-XVFCMESISA-N  
#
_pdbx_chem_comp_identifier.comp_id          RSP
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.6.1
_pdbx_chem_comp_identifier.identifier       "[(2R,3S,4R,5R)-5-(4-azanyl-2-sulfanylidene-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RSP  "Create component"       2010-01-11  RCSB  
RSP  "Modify descriptor"      2011-06-04  RCSB  
RSP  "Modify parent residue"  2019-12-05  PDBE  
##
