data_SAP
# 
_chem_comp.id                                    SAP 
_chem_comp.name                                  
;ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H16 N5 O12 P3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2013-02-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   OBS 
_chem_comp.pdbx_replaced_by                      AGS 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        523.247 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SAP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1AUX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SAP PG     PG     P 0 1 N N N 60.170 64.165 8.059  -6.391 -1.462 0.892  PG     SAP 1  
SAP S1G    S1G    S 0 1 N N N 59.626 64.508 6.175  -7.632 -0.145 0.446  S1G    SAP 2  
SAP O2G    O2G    O 0 1 N N N 60.274 62.661 8.371  -6.589 -1.886 2.432  O2G    SAP 3  
SAP O3G    O3G    O 0 1 N N N 61.499 64.816 8.323  -6.612 -2.748 -0.051 O3G    SAP 4  
SAP PB     PB     P 0 1 N N N 58.558 66.346 9.221  -4.095 -0.315 -0.589 PB     SAP 5  
SAP O1B    O1B    O 0 1 N N N 57.883 66.746 7.957  -4.959 0.625  -1.338 O1B    SAP 6  
SAP O2B    O2B    O 0 1 N N N 59.647 67.236 9.797  -3.666 -1.533 -1.550 O2B    SAP 7  
SAP O3B    O3B    O 0 1 N N N 59.069 64.859 9.035  -4.902 -0.890 0.680  O3B    SAP 8  
SAP PA     PA     P 0 1 N N N 57.370 65.289 11.641 -1.803 1.559  -0.738 PA     SAP 9  
SAP O1A    O1A    O 0 1 N N N 56.177 65.760 12.419 -1.585 1.237  -2.165 O1A    SAP 10 
SAP O2A    O2A    O 0 1 N N N 57.364 63.814 11.294 -2.480 3.015  -0.613 O2A    SAP 11 
SAP O3A    O3A    O 0 1 N N N 57.393 66.120 10.248 -2.776 0.458  -0.081 O3A    SAP 12 
SAP "O5'"  "O5'"  O 0 1 N N N 58.765 65.743 12.362 -0.391 1.556  0.035  "O5'"  SAP 13 
SAP "C5'"  "C5'"  C 0 1 N N N 59.919 64.964 11.909 0.724  2.351  -0.377 "C5'"  SAP 14 
SAP "C4'"  "C4'"  C 0 1 N N R 60.531 64.066 12.985 1.900  2.110  0.572  "C4'"  SAP 15 
SAP "O4'"  "O4'"  O 0 1 N N N 60.598 64.851 14.212 2.369  0.758  0.436  "O4'"  SAP 16 
SAP "C3'"  "C3'"  C 0 1 N N S 59.736 62.811 13.407 3.070  3.041  0.201  "C3'"  SAP 17 
SAP "O3'"  "O3'"  O 0 1 N N N 59.904 61.676 12.564 3.397  3.896  1.299  "O3'"  SAP 18 
SAP "C2'"  "C2'"  C 0 1 N N R 60.185 62.615 14.858 4.242  2.076  -0.100 "C2'"  SAP 19 
SAP "O2'"  "O2'"  O 0 1 N N N 61.330 61.803 15.030 5.467  2.576  0.440  "O2'"  SAP 20 
SAP "C1'"  "C1'"  C 0 1 N N R 60.401 64.015 15.355 3.799  0.786  0.637  "C1'"  SAP 21 
SAP N9     N9     N 0 1 Y N N 59.245 64.514 16.142 4.427  -0.393 0.036  N9     SAP 22 
SAP C8     C8     C 0 1 Y N N 58.123 65.072 15.548 3.919  -1.150 -0.977 C8     SAP 23 
SAP N7     N7     N 0 1 Y N N 57.186 65.443 16.415 4.739  -2.120 -1.262 N7     SAP 24 
SAP C5     C5     C 0 1 Y N N 57.728 65.106 17.662 5.821  -2.047 -0.451 C5     SAP 25 
SAP C6     C6     C 0 1 Y N N 57.266 65.222 19.014 6.997  -2.803 -0.302 C6     SAP 26 
SAP N6     N6     N 0 1 N N N 56.067 65.730 19.378 7.237  -3.905 -1.104 N6     SAP 27 
SAP N1     N1     N 0 1 Y N N 58.090 64.774 19.990 7.874  -2.434 0.625  N1     SAP 28 
SAP C2     C2     C 0 1 Y N N 59.300 64.250 19.675 7.654  -1.383 1.395  C2     SAP 29 
SAP N3     N3     N 0 1 Y N N 59.831 64.093 18.486 6.568  -0.647 1.292  N3     SAP 30 
SAP C4     C4     C 0 1 Y N N 58.996 64.541 17.498 5.637  -0.935 0.388  C4     SAP 31 
SAP HOG2   HOG2   H 0 0 N N N 60.056 62.160 7.594  -7.466 -2.241 2.634  HOG2   SAP 32 
SAP HOG3   HOG3   H 0 0 N N N 61.800 65.254 7.535  -5.999 -3.475 0.125  HOG3   SAP 33 
SAP HOB2   HOB2   H 0 0 N N N 59.769 67.992 9.235  -3.098 -2.189 -1.124 HOB2   SAP 34 
SAP HOA2   HOA2   H 0 0 N N N 56.576 63.410 11.638 -2.652 3.292  0.297  HOA2   SAP 35 
SAP "H5'1" "H5'1" H 0 0 N N N 59.598 64.328 11.071 1.012  2.074  -1.391 "H5'1" SAP 36 
SAP "H5'2" "H5'2" H 0 0 N N N 60.693 65.664 11.563 0.447  3.405  -0.353 "H5'2" SAP 37 
SAP "H4'"  "H4'"  H 0 1 N N N 61.541 63.763 12.672 1.589  2.293  1.601  "H4'"  SAP 38 
SAP "H3'"  "H3'"  H 0 1 N N N 58.671 63.087 13.424 2.824  3.632  -0.681 "H3'"  SAP 39 
SAP "HO3'" "HO3'" H 0 0 N N N 59.382 60.955 12.896 4.128  4.503  1.121  "HO3'" SAP 40 
SAP "H2'"  "H2'"  H 0 1 N N N 59.342 62.179 15.415 4.335  1.899  -1.172 "H2'"  SAP 41 
SAP "HO2'" "HO2'" H 0 0 N N N 61.535 61.736 15.955 5.740  3.428  0.073  "HO2'" SAP 42 
SAP "H1'"  "H1'"  H 0 1 N N N 61.300 64.032 15.988 4.036  0.850  1.699  "H1'"  SAP 43 
SAP H8     H8     H 0 1 N N N 58.020 65.194 14.480 2.975  -0.971 -1.471 H8     SAP 44 
SAP HN61   HN61   H 0 0 N N N 55.976 65.691 20.373 6.589  -4.165 -1.778 HN61   SAP 45 
SAP HN62   HN62   H 0 0 N N N 56.002 66.681 19.075 8.052  -4.419 -0.992 HN62   SAP 46 
SAP H2     H2     H 0 1 N N N 59.903 63.920 20.508 8.394  -1.118 2.136  H2     SAP 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SAP PG    S1G    DOUB N N 1  
SAP PG    O2G    SING N N 2  
SAP PG    O3G    SING N N 3  
SAP PG    O3B    SING N N 4  
SAP O2G   HOG2   SING N N 5  
SAP O3G   HOG3   SING N N 6  
SAP PB    O1B    DOUB N N 7  
SAP PB    O2B    SING N N 8  
SAP PB    O3B    SING N N 9  
SAP PB    O3A    SING N N 10 
SAP O2B   HOB2   SING N N 11 
SAP PA    O1A    DOUB N N 12 
SAP PA    O2A    SING N N 13 
SAP PA    O3A    SING N N 14 
SAP PA    "O5'"  SING N N 15 
SAP O2A   HOA2   SING N N 16 
SAP "O5'" "C5'"  SING N N 17 
SAP "C5'" "C4'"  SING N N 18 
SAP "C5'" "H5'1" SING N N 19 
SAP "C5'" "H5'2" SING N N 20 
SAP "C4'" "O4'"  SING N N 21 
SAP "C4'" "C3'"  SING N N 22 
SAP "C4'" "H4'"  SING N N 23 
SAP "O4'" "C1'"  SING N N 24 
SAP "C3'" "O3'"  SING N N 25 
SAP "C3'" "C2'"  SING N N 26 
SAP "C3'" "H3'"  SING N N 27 
SAP "O3'" "HO3'" SING N N 28 
SAP "C2'" "O2'"  SING N N 29 
SAP "C2'" "C1'"  SING N N 30 
SAP "C2'" "H2'"  SING N N 31 
SAP "O2'" "HO2'" SING N N 32 
SAP "C1'" N9     SING N N 33 
SAP "C1'" "H1'"  SING N N 34 
SAP N9    C8     SING Y N 35 
SAP N9    C4     SING Y N 36 
SAP C8    N7     DOUB Y N 37 
SAP C8    H8     SING N N 38 
SAP N7    C5     SING Y N 39 
SAP C5    C6     SING Y N 40 
SAP C5    C4     DOUB Y N 41 
SAP C6    N6     SING N N 42 
SAP C6    N1     DOUB Y N 43 
SAP N6    HN61   SING N N 44 
SAP N6    HN62   SING N N 45 
SAP N1    C2     SING Y N 46 
SAP C2    N3     DOUB Y N 47 
SAP C2    H2     SING N N 48 
SAP N3    C4     SING Y N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SAP SMILES           ACDLabs              12.01 "O=P(O)(OP(=S)(O)O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O"                                                                                                                                                  
SAP InChI            InChI                1.03  "InChI=1S/C10H16N5O12P3S/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(25-10)1-24-28(18,19)26-29(20,21)27-30(22,23)31/h2-4,6-7,10,16-17H,1H2,(H,18,19)(H,20,21)(H2,11,12,13)(H2,22,23,31)/t4-,6-,7-,10-/m1/s1" 
SAP InChIKey         InChI                1.03  NLTUCYMLOPLUHL-KQYNXXCUSA-N                                                                                                                                                                                   
SAP SMILES_CANONICAL CACTVS               3.370 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=S)[C@@H](O)[C@H]3O"                                                                                                                          
SAP SMILES           CACTVS               3.370 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=S)[CH](O)[CH]3O"                                                                                                                                
SAP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(O)OP(=S)(O)O)O)O)N"                                                                                                                   
SAP SMILES           "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=S)(O)O)O)O)N"                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SAP "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(S)-hydroxy{[(R)-hydroxy(thiophosphonooxy)phosphoryl]oxy}phosphoryl]adenosine"                                                             
SAP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] bis(oxidanyl)phosphinothioyl hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SAP "Create component"   1999-07-08 PDBJ 
SAP "Modify descriptor"  2011-06-04 RCSB 
SAP "Obsolete component" 2013-02-04 RCSB 
# 
