data_SGP
# 
_chem_comp.id                                    SGP 
_chem_comp.name                                  "GUANOSINE-2',3'-CYCLOPHOSPHOROTHIOATE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H12 N5 O6 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        361.271 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SGP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1RSN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SGP P      P    P 0 1 N N S 27.530 3.673  21.963 1.744  -0.007 2.477  P      SGP 1  
SGP S1P    S1P  S 0 1 N N N 28.921 3.934  23.364 2.298  1.458  3.485  S1P    SGP 2  
SGP O1P    O1P  O 0 1 N N N 27.558 4.683  20.978 2.898  -1.122 2.343  O1P    SGP 3  
SGP "O5'"  O5*  O 0 1 N N N 24.001 -0.382 21.146 -4.259 -0.843 2.829  "O5'"  SGP 4  
SGP "C5'"  C5*  C 0 1 N N N 24.565 0.215  19.979 -3.096 -0.045 3.057  "C5'"  SGP 5  
SGP "C4'"  C4*  C 0 1 N N R 25.387 1.442  20.157 -1.903 -0.662 2.325  "C4'"  SGP 6  
SGP "O4'"  O4*  O 0 1 N N N 24.748 2.756  20.066 -2.156 -0.688 0.911  "O4'"  SGP 7  
SGP "C3'"  C3*  C 0 1 N N R 26.169 1.614  21.442 -0.643 0.198  2.552  "C3'"  SGP 8  
SGP "O3'"  O3*  O 0 1 N N N 27.507 2.339  21.194 0.385  -0.657 3.103  "O3'"  SGP 9  
SGP "C2'"  C2*  C 0 1 N N R 25.238 2.475  22.329 -0.196 0.593  1.121  "C2'"  SGP 10 
SGP "O2'"  O2*  O 0 1 N N N 26.139 3.501  22.743 1.230  0.465  1.008  "O2'"  SGP 11 
SGP "C1'"  C1*  C 0 1 N N R 24.289 3.145  21.331 -0.889 -0.481 0.251  "C1'"  SGP 12 
SGP N9     N9   N 0 1 Y N N 22.905 3.203  21.365 -1.092 0.011  -1.113 N9     SGP 13 
SGP C8     C8   C 0 1 Y N N 22.060 2.624  20.490 -2.170 0.717  -1.564 C8     SGP 14 
SGP N7     N7   N 0 1 Y N N 20.781 2.871  20.674 -2.020 0.991  -2.827 N7     SGP 15 
SGP C5     C5   C 0 1 Y N N 20.764 3.702  21.787 -0.842 0.479  -3.260 C5     SGP 16 
SGP C6     C6   C 0 1 N N N 19.752 4.353  22.505 -0.172 0.469  -4.506 C6     SGP 17 
SGP O6     O6   O 0 1 N N N 18.533 4.351  22.324 -0.662 1.007  -5.484 O6     SGP 18 
SGP N1     N1   N 0 1 N N N 20.178 5.071  23.594 1.027  -0.148 -4.584 N1     SGP 19 
SGP C2     C2   C 0 1 N N N 21.513 5.193  23.944 1.563  -0.751 -3.485 C2     SGP 20 
SGP N2     N2   N 0 1 N N N 21.746 5.957  25.030 2.781  -1.374 -3.595 N2     SGP 21 
SGP N3     N3   N 0 1 N N N 22.480 4.600  23.310 0.951  -0.748 -2.323 N3     SGP 22 
SGP C4     C4   C 0 1 Y N N 22.068 3.907  22.204 -0.237 -0.152 -2.168 C4     SGP 23 
SGP HOP1   1HOP H 0 0 N N N 26.894 4.558  20.309 3.089  -1.436 3.237  HOP1   SGP 24 
SGP "HO5'" *HO5 H 0 0 N N N 23.476 -1.165 21.032 -4.987 -0.421 3.306  "HO5'" SGP 25 
SGP "H5'1" 1H5* H 0 0 N N N 25.160 -0.549 19.427 -2.887 -0.005 4.126  "H5'1" SGP 26 
SGP "H5'2" 2H5* H 0 0 N N N 23.753 0.420  19.243 -3.269 0.963  2.683  "H5'2" SGP 27 
SGP "H4'"  H4*  H 0 1 N N N 26.015 1.194  19.270 -1.729 -1.675 2.689  "H4'"  SGP 28 
SGP "H3'"  H3*  H 0 1 N N N 26.436 0.637  21.908 -0.840 1.066  3.181  "H3'"  SGP 29 
SGP "H2'"  H2*  H 0 1 N N N 24.699 1.947  23.150 -0.525 1.595  0.842  "H2'"  SGP 30 
SGP "H1'"  H1*  H 0 1 N N N 24.369 4.198  21.686 -0.306 -1.402 0.242  "H1'"  SGP 31 
SGP H8     H8   H 0 1 N N N 22.399 1.978  19.662 -3.019 1.005  -0.962 H8     SGP 32 
SGP HN1    HN1  H 0 1 N N N 19.472 5.533  24.167 1.505  -0.168 -5.427 HN1    SGP 33 
SGP HN21   1HN2 H 0 0 N N N 22.728 6.046  25.287 3.177  -1.805 -2.822 HN21   SGP 34 
SGP HN22   2HN2 H 0 0 N N N 21.202 5.617  25.823 3.243  -1.389 -4.448 HN22   SGP 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SGP P     S1P    DOUB N N 1  
SGP P     O1P    SING N N 2  
SGP P     "O3'"  SING N N 3  
SGP P     "O2'"  SING N N 4  
SGP O1P   HOP1   SING N N 5  
SGP "O5'" "C5'"  SING N N 6  
SGP "O5'" "HO5'" SING N N 7  
SGP "C5'" "C4'"  SING N N 8  
SGP "C5'" "H5'1" SING N N 9  
SGP "C5'" "H5'2" SING N N 10 
SGP "C4'" "O4'"  SING N N 11 
SGP "C4'" "C3'"  SING N N 12 
SGP "C4'" "H4'"  SING N N 13 
SGP "O4'" "C1'"  SING N N 14 
SGP "C3'" "O3'"  SING N N 15 
SGP "C3'" "C2'"  SING N N 16 
SGP "C3'" "H3'"  SING N N 17 
SGP "C2'" "O2'"  SING N N 18 
SGP "C2'" "C1'"  SING N N 19 
SGP "C2'" "H2'"  SING N N 20 
SGP "C1'" N9     SING N N 21 
SGP "C1'" "H1'"  SING N N 22 
SGP N9    C8     SING Y N 23 
SGP N9    C4     SING Y N 24 
SGP C8    N7     DOUB Y N 25 
SGP C8    H8     SING N N 26 
SGP N7    C5     SING Y N 27 
SGP C5    C6     SING N N 28 
SGP C5    C4     DOUB Y N 29 
SGP C6    O6     DOUB N N 30 
SGP C6    N1     SING N N 31 
SGP N1    C2     SING N N 32 
SGP N1    HN1    SING N N 33 
SGP C2    N2     SING N N 34 
SGP C2    N3     DOUB N N 35 
SGP N2    HN21   SING N N 36 
SGP N2    HN22   SING N N 37 
SGP N3    C4     SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SGP SMILES           ACDLabs              10.04 "S=P1(OC2C(OC(C2O1)CO)n3c4N=C(N)NC(=O)c4nc3)O"                                                                                                                    
SGP SMILES_CANONICAL CACTVS               3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO)[C@H]4O[P@](O)(=S)O[C@@H]34"                                                                                               
SGP SMILES           CACTVS               3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO)[CH]4O[P](O)(=S)O[CH]34"                                                                                                      
SGP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@H]4[C@@H]([C@H](O3)CO)O[P@](=S)(O4)O)N=C(NC2=O)N"                                                                                              
SGP SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C4C(C(O3)CO)OP(=S)(O4)O)N=C(NC2=O)N"                                                                                                                  
SGP InChI            InChI                1.03  "InChI=1S/C10H12N5O6PS/c11-10-13-7-4(8(17)14-10)12-2-15(7)9-6-5(3(1-16)19-9)20-22(18,23)21-6/h2-3,5-6,9,16H,1H2,(H,18,23)(H3,11,13,14,17)/t3-,5-,6-,9-,22+/m1/s1" 
SGP InChIKey         InChI                1.03  QZEROIIFJLCOOE-FHIGPPGSSA-N                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SGP "SYSTEMATIC NAME" ACDLabs              10.04 "2-amino-9-[(2S,3aR,4R,6R,6aR)-2-hydroxy-6-(hydroxymethyl)-2-sulfidotetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-4-yl]-1,9-dihydro-6H-purin-6-one" 
SGP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-amino-9-[(1R,3S,5R,6R,8R)-3-hydroxy-8-(hydroxymethyl)-3-sulfanylidene-2,4,7-trioxa-3$l^{5}-phosphabicyclo[3.3.0]octan-6-yl]-1H-purin-6-one"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SGP "Create component"  1999-07-08 EBI  
SGP "Modify descriptor" 2011-06-04 RCSB 
# 
