data_STP
# 
_chem_comp.id                                    STP 
_chem_comp.name                                  
;2'-DEOXYADENOSINE 5'-O-(1-THIOTRIPHOSPHATE)
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H16 N5 O11 P3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        507.247 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     STP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9ICA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
STP PG     PG   P 0 1 N N N 74.011 35.887 53.500 2.107  6.110  -2.438 PG     STP 1  
STP O1G    O1G  O 0 1 N N N 74.860 35.247 52.473 0.715  5.886  -1.925 O1G    STP 2  
STP O2G    O2G  O 0 1 N N N 74.674 36.524 54.672 3.252  6.191  -1.301 O2G    STP 3  
STP O3G    O3G  O 0 1 N N N 72.916 34.844 53.994 2.314  7.470  -3.286 O3G    STP 4  
STP PB     PB   P 0 1 N N N 72.897 37.222 51.225 2.092  4.419  -4.858 PB     STP 5  
STP O1B    O1B  O 0 1 N N N 72.876 38.695 51.096 0.699  3.863  -4.838 O1B    STP 6  
STP O2B    O2B  O 0 1 N N N 73.962 36.468 50.509 2.306  5.683  -5.843 O2B    STP 7  
STP O3B    O3B  O 0 1 N N N 73.044 36.928 52.756 2.640  4.957  -3.437 O3B    STP 8  
STP PA     PA   P 0 1 N N N 70.635 35.330 50.295 3.769  1.990  -4.649 PA     STP 9  
STP S1A    S1A  S 0 1 N N N 71.288 34.096 50.802 5.135  1.035  -5.646 S1A    STP 10 
STP O2A    O2A  O 0 1 N N N 69.166 35.445 50.529 4.213  2.444  -3.155 O2A    STP 11 
STP O3A    O3A  O 0 1 N N N 71.367 36.638 50.915 3.261  3.391  -5.284 O3A    STP 12 
STP "O5'"  O5*  O 0 1 N N N 70.930 35.496 48.730 2.393  1.188  -4.339 "O5'"  STP 13 
STP "C5'"  C5*  C 0 1 N N N ?      ?      ?      2.420  0.051  -3.493 "C5'"  STP 14 
STP "C4'"  C4*  C 0 1 N N N ?      ?      ?      1.519  0.303  -2.298 "C4'"  STP 15 
STP "O4'"  O4*  O 0 1 N N N ?      ?      ?      2.017  1.423  -1.547 "O4'"  STP 16 
STP "C3'"  C3*  C 0 1 N N N ?      ?      ?      1.465  -0.865 -1.325 "C3'"  STP 17 
STP "O3'"  O3*  O 0 1 N N N ?      ?      ?      0.501  -1.829 -1.694 "O3'"  STP 18 
STP "C2'"  C2*  C 0 1 N N N ?      ?      ?      1.083  -0.170 -0.038 "C2'"  STP 19 
STP "C1'"  C1*  C 0 1 N N N ?      ?      ?      1.873  1.125  -0.144 "C1'"  STP 20 
STP N9     N9   N 0 1 Y N N ?      ?      ?      1.257  2.259  0.534  N9     STP 21 
STP C8     C8   C 0 1 Y N N ?      ?      ?      0.318  3.108  0.004  C8     STP 22 
STP N7     N7   N 0 1 Y N N ?      ?      ?      -0.051 4.040  0.858  N7     STP 23 
STP C5     C5   C 0 1 Y N N ?      ?      ?      0.680  3.788  1.992  C5     STP 24 
STP C6     C6   C 0 1 Y N N ?      ?      ?      0.736  4.418  3.231  C6     STP 25 
STP N6     N6   N 0 1 N N N ?      ?      ?      -0.061 5.544  3.500  N6     STP 26 
STP N1     N1   N 0 1 Y N N ?      ?      ?      1.572  3.932  4.180  N1     STP 27 
STP C2     C2   C 0 1 Y N N ?      ?      ?      2.315  2.844  3.862  C2     STP 28 
STP N3     N3   N 0 1 Y N N ?      ?      ?      2.348  2.150  2.703  N3     STP 29 
STP C4     C4   C 0 1 Y N N ?      ?      ?      1.499  2.685  1.812  C4     STP 30 
STP HOG2   2HOG H 0 0 N N N 75.595 36.660 54.481 3.104  6.762  -0.517 HOG2   STP 31 
STP HOG3   3HOG H 0 0 N N N 73.066 34.636 54.909 1.967  8.313  -2.923 HOG3   STP 32 
STP HOB2   2HOB H 0 0 N N N 73.689 36.307 49.613 1.673  6.432  -5.798 HOB2   STP 33 
STP HOA2   2HOA H 0 0 N N N 68.995 35.469 51.463 4.286  1.759  -2.457 HOA2   STP 34 
STP "H5'1" 1H5* H 0 0 N N N ?      ?      ?      2.073  -0.818 -4.059 "H5'1" STP 35 
STP "H5'2" 2H5* H 0 0 N N N ?      ?      ?      3.450  -0.121 -3.168 "H5'2" STP 36 
STP "H4'"  H4*  H 0 1 N N N ?      ?      ?      0.517  0.560  -2.662 "H4'"  STP 37 
STP "H3'"  H3*  H 0 1 N N N ?      ?      ?      2.442  -1.350 -1.222 "H3'"  STP 38 
STP "HO3'" *HO3 H 0 0 N N N ?      ?      ?      -0.371 -1.402 -1.641 "HO3'" STP 39 
STP "H2'1" 1H2* H 0 0 N N N ?      ?      ?      0.002  0.014  -0.002 "H2'1" STP 40 
STP "H2'2" 2H2* H 0 0 N N N ?      ?      ?      1.337  -0.751 0.854  "H2'2" STP 41 
STP "H1'"  H1*  H 0 1 N N N ?      ?      ?      2.876  1.023  0.284  "H1'"  STP 42 
STP H8     H8   H 0 1 N N N ?      ?      ?      -0.055 2.995  -1.005 H8     STP 43 
STP HN61   1HN6 H 0 0 N N N ?      ?      ?      -0.929 5.428  3.988  HN61   STP 44 
STP HN62   2HN6 H 0 0 N N N ?      ?      ?      0.201  6.434  3.121  HN62   STP 45 
STP H2     H2   H 0 1 N N N ?      ?      ?      2.973  2.482  4.644  H2     STP 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
STP PG    O1G    DOUB N N 1  
STP PG    O2G    SING N N 2  
STP PG    O3G    SING N N 3  
STP PG    O3B    SING N N 4  
STP O2G   HOG2   SING N N 5  
STP O3G   HOG3   SING N N 6  
STP PB    O1B    DOUB N N 7  
STP PB    O2B    SING N N 8  
STP PB    O3B    SING N N 9  
STP PB    O3A    SING N N 10 
STP O2B   HOB2   SING N N 11 
STP PA    S1A    DOUB N N 12 
STP PA    O2A    SING N N 13 
STP PA    O3A    SING N N 14 
STP PA    "O5'"  SING N N 15 
STP O2A   HOA2   SING N N 16 
STP "O5'" "C5'"  SING N N 17 
STP "C5'" "C4'"  SING N N 18 
STP "C5'" "H5'1" SING N N 19 
STP "C5'" "H5'2" SING N N 20 
STP "C4'" "O4'"  SING N N 21 
STP "C4'" "C3'"  SING N N 22 
STP "C4'" "H4'"  SING N N 23 
STP "O4'" "C1'"  SING N N 24 
STP "C3'" "O3'"  SING N N 25 
STP "C3'" "C2'"  SING N N 26 
STP "C3'" "H3'"  SING N N 27 
STP "O3'" "HO3'" SING N N 28 
STP "C2'" "C1'"  SING N N 29 
STP "C2'" "H2'1" SING N N 30 
STP "C2'" "H2'2" SING N N 31 
STP "C1'" N9     SING N N 32 
STP "C1'" "H1'"  SING N N 33 
STP N9    C8     SING Y N 34 
STP N9    C4     SING Y N 35 
STP C8    N7     DOUB Y N 36 
STP C8    H8     SING N N 37 
STP N7    C5     SING Y N 38 
STP C5    C6     SING Y N 39 
STP C5    C4     DOUB Y N 40 
STP C6    N6     SING N N 41 
STP C6    N1     DOUB Y N 42 
STP N6    HN61   SING N N 43 
STP N6    HN62   SING N N 44 
STP N1    C2     SING Y N 45 
STP C2    N3     DOUB Y N 46 
STP C2    H2     SING N N 47 
STP N3    C4     SING Y N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
STP SMILES           ACDLabs              10.04 "O=P(O)(O)OP(=O)(O)OP(=S)(O)OCC3OC(n2cnc1c(ncnc12)N)CC3O"                                                                                                                                         
STP SMILES_CANONICAL CACTVS               3.341 "Nc1ncnc2n(cnc12)C3CC(O)C(CO[P@@](O)(=S)O[P@@](O)(=O)O[P](O)(O)=O)O3"                                                                                                                             
STP SMILES           CACTVS               3.341 "Nc1ncnc2n(cnc12)C3CC(O)C(CO[P](O)(=S)O[P](O)(=O)O[P](O)(O)=O)O3"                                                                                                                                 
STP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3C[C@H]([C@@H](O3)CO[P@](=S)(O)O[P@](=O)(O)OP(=O)(O)O)O)N"                                                                                                                
STP SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3CC(C(O3)COP(=S)(O)OP(=O)(O)OP(=O)(O)O)O)N"                                                                                                                                   
STP InChI            InChI                1.03  "InChI=1S/C10H16N5O11P3S/c11-9-8-10(13-3-12-9)15(4-14-8)7-1-5(16)6(24-7)2-23-29(22,30)26-28(20,21)25-27(17,18)19/h3-7,16H,1-2H2,(H,20,21)(H,22,30)(H2,11,12,13)(H2,17,18,19)/t5?,6?,7?,29-/m1/s1" 
STP InChIKey         InChI                1.03  CCPIKNHZOWQALM-XZPDCLKESA-N                                                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
STP "SYSTEMATIC NAME" ACDLabs              10.04 "9-{2-deoxy-5-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphorothioyl]pentofuranosyl}-9H-purin-6-amine"  
STP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2S,3R,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphinothioyl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
STP "Create component"  1999-07-08 EBI  
STP "Modify descriptor" 2011-06-04 RCSB 
# 
